#
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raw markdown copy
# Directory Structure

```
├── .gitignore
├── examples
│   ├── claude_desktop_config.json
│   └── sample-openapi.json
├── LICENSE
├── package-lock.json
├── package.json
├── README.md
├── src
│   └── index.ts
├── tests
│   ├── analyzer.test.ts
│   ├── fixtures
│   │   ├── another-api.json
│   │   ├── invalid-api.json
│   │   └── sample-api.json
│   ├── server.test.ts
│   ├── setup.ts
│   └── validation.test.ts
├── tsconfig.json
└── vitest.config.ts
```

# Files

--------------------------------------------------------------------------------
/.gitignore:
--------------------------------------------------------------------------------

```
# Logs
logs
*.log
npm-debug.log*
yarn-debug.log*
yarn-error.log*
pnpm-debug.log*
lerna-debug.log*

# Runtime data
pids
*.pid
*.seed
*.pid.lock

# Coverage directory used by tools like istanbul
coverage
*.lcov

# nyc test coverage
.nyc_output

# node-wnyc
.grunt

# Bower dependency directory (https://bower.io/)
bower_components

# node-waf configuration
.lock-wscript

# Compiled binary addons (https://nodejs.org/api/addons.html)
build/Release

# Dependency directories
node_modules/
jspm_packages/

# Snowpack dependency directory (https://snowpack.dev/)
web_modules/

# TypeScript cache
*.tsbuildinfo

# Optional npm cache directory
.npm

# Optional eslint cache
.eslintcache

# Optional stylelint cache
.stylelintcache

# Microbundle cache
.rpt2_cache/
.rts2_cache_cjs/
.rts2_cache_es/
.rts2_cache_umd/

# Optional REPL history
.node_repl_history

# Output of 'npm pack'
*.tgz

# Yarn Integrity file
.yarn-integrity

# dotenv environment variable files
.env
.env.development.local
.env.test.local
.env.production.local
.env.local

# parcel-bundler cache (https://parceljs.org/)
.cache
.parcel-cache

# Next.js build output
.next
out

# Nuxt.js build / generate output
.nuxt
dist

# Gatsby files
.cache/
# Comment in the public line in if your project uses Gatsby and not Next.js
# https://nextjs.org/blog/next-9-1#public-directory-support
# public

# vuepress build output
.vuepress/dist

# vuepress v2.x temp and cache directory
.temp
.cache

# Docusaurus cache and generated files
.docusaurus

# Serverless directories
.serverless/

# FuseBox cache
.fusebox/

# DynamoDB Local files
.dynamodb/

# TernJS port file
.tern-port

# Stores VSCode versions used for testing VSCode extensions
.vscode-test

# yarn v2
.yarn/cache
.yarn/unplugged
.yarn/build-state.yml
.yarn/install-state.gz
.pnp.*

# macOS
.DS_Store

# IDE
.vscode/
.idea/
*.swp
*.swo

# TypeScript
dist/
*.tsbuildinfo

# Test files
test-results/
*.test.js
*.spec.js
```

--------------------------------------------------------------------------------
/README.md:
--------------------------------------------------------------------------------

```markdown
# OpenAPI Analyzer MCP Server

[![npm version](https://badge.fury.io/js/openapi-analyzer-mcp.svg)](https://badge.fury.io/js/openapi-analyzer-mcp)
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)

A powerful **Model Context Protocol (MCP) server** for analyzing OpenAPI specifications with Claude Desktop and other LLM clients. This server enables natural language queries about your API structures, endpoints, schemas, and helps identify inconsistencies across multiple OpenAPI specs.

## 📋 Table of Contents

- [🚀 Features](#-features)
- [🛠 Installation](#-installation)
- [⚙️ Configuration](#️-configuration)
- [🎯 Usage](#-usage)
- [🔧 Available Tools](#-available-tools)
- [🔍 Example Output](#-example-output)
- [🏗️ Creating Your Own API Registry](#️-creating-your-own-api-registry)
- [🚨 Troubleshooting](#-troubleshooting)
- [🤝 Contributing](#-contributing)
- [🆕 Changelog](#-changelog)
- [📝 License](#-license)

## 🚀 Features

### 🎯 **Smart Discovery System**
- **📡 API Registry Support**: Automatically discover APIs from `apis.json` registries (support for 30+ APIs)
- **🔗 URL-Based Loading**: Load specs from individual URLs with automatic fallback
- **📁 Local File Support**: Traditional folder-based spec loading with multi-format support
- **🔄 Priority System**: Discovery URL → Individual URLs → Local folder (intelligent fallback)

### 🔍 **Advanced Analysis**
- **📊 Bulk Analysis**: Load and analyze 90+ OpenAPI specification files simultaneously
- **🔍 Smart Search**: Find endpoints across all APIs using natural language queries  
- **📈 Comprehensive Stats**: Generate detailed statistics about your API ecosystem
- **🔧 Inconsistency Detection**: Identify authentication schemes and naming convention mismatches
- **📋 Schema Comparison**: Compare schemas with the same name across different APIs
- **⚡ Fast Queries**: In-memory indexing for lightning-fast responses

### 🌐 **Universal Compatibility**
- **Multi-Format Support**: JSON, YAML, and YML specifications
- **Version Support**: OpenAPI 2.0, 3.0, and 3.1 specifications
- **Remote & Local**: Works with URLs, API registries, and local files
- **Source Tracking**: Know exactly where each API spec was loaded from

## 🛠 Installation

### Option 1: Install from npm

```bash
npm install openapi-analyzer-mcp
```

### Option 2: Build from source

```bash
git clone https://github.com/sureshkumars/openapi-analyzer-mcp.git
cd openapi-analyzer-mcp
npm install
npm run build
```

## ⚙️ Configuration

### 🎯 Smart Discovery Options

The OpenAPI Analyzer supports **three discovery methods** with intelligent priority fallback:

1. **🏆 Priority 1: API Registry** (`OPENAPI_DISCOVERY_URL`)
2. **🥈 Priority 2: Individual URLs** (`OPENAPI_SPEC_URLS`) 
3. **🥉 Priority 3: Local Folder** (`OPENAPI_SPECS_FOLDER`)

### Claude Desktop Setup

**Find your config file:**
- **macOS**: `~/Library/Application Support/Claude/claude_desktop_config.json`
- **Windows**: `%APPDATA%\\Claude\\claude_desktop_config.json`

### Configuration Examples

#### 🌟 **Option 1: API Registry Discovery (Recommended)**
Perfect for companies with centralized API registries:

```json
{
  "mcpServers": {
    "openapi-analyzer": {
      "command": "npx",
      "args": ["-y", "openapi-analyzer-mcp"],
      "env": {
        "OPENAPI_DISCOVERY_URL": "https://docs.company.com/apis.json"
      }
    }
  }
}
```

#### 🔗 **Option 2: Individual API URLs**
Load specific APIs from direct URLs:

```json
{
  "mcpServers": {
    "openapi-analyzer": {
      "command": "npx", 
      "args": ["-y", "openapi-analyzer-mcp"],
      "env": {
        "OPENAPI_SPEC_URLS": "https://api.example.com/v1/openapi.yaml,https://api.example.com/v2/openapi.yaml,https://petstore.swagger.io/v2/swagger.json"
      }
    }
  }
}
```

#### 📁 **Option 3: Local Folder**
Traditional approach for local specification files:

```json
{
  "mcpServers": {
    "openapi-analyzer": {
      "command": "npx",
      "args": ["-y", "openapi-analyzer-mcp"],
      "env": {
        "OPENAPI_SPECS_FOLDER": "/absolute/path/to/your/openapi-specs"
      }
    }
  }
}
```

#### 🔄 **Option 4: Multi-Source with Fallback**
Ultimate flexibility - tries all methods with intelligent fallback:

```json
{
  "mcpServers": {
    "openapi-analyzer": {
      "command": "npx",
      "args": ["-y", "openapi-analyzer-mcp"],
      "env": {
        "OPENAPI_DISCOVERY_URL": "https://docs.company.com/apis.json",
        "OPENAPI_SPEC_URLS": "https://legacy-api.com/spec.yaml,https://external-api.com/spec.json",
        "OPENAPI_SPECS_FOLDER": "/path/to/local/specs"
      }
    }
  }
}
```

#### 🏢 **Real-World Examples**

**Company with API Registry:**
```json
{
  "mcpServers": {
    "company-apis": {
      "command": "npx",
      "args": ["-y", "openapi-analyzer-mcp"],
      "env": {
        "OPENAPI_DISCOVERY_URL": "https://api.company.com/registry/apis.json"
      }
    }
  }
}
```

**Multiple API Sources:**
```json
{
  "mcpServers": {
    "multi-apis": {
      "command": "npx",
      "args": ["-y", "openapi-analyzer-mcp"],
      "env": {
        "OPENAPI_SPEC_URLS": "https://petstore.swagger.io/v2/swagger.json,https://api.example.com/v1/openapi.yaml"
      }
    }
  }
}
```

### 🔧 Environment Variables

| Variable | Description | Example | Priority |
|----------|-------------|---------|----------|
| `OPENAPI_DISCOVERY_URL` | URL to API registry (apis.json format) | `https://docs.company.com/apis.json` | 1 (Highest) |
| `OPENAPI_SPEC_URLS` | Comma-separated list of OpenAPI spec URLs | `https://api1.com/spec.yaml,https://api2.com/spec.json` | 2 (Medium) |
| `OPENAPI_SPECS_FOLDER` | Absolute path to local OpenAPI files folder | `/absolute/path/to/specs` | 3 (Fallback) |

**⚠️ Important Notes:**
- At least one environment variable must be set
- System tries sources in priority order and stops at first success
- Always use absolute paths for `OPENAPI_SPECS_FOLDER`
- Supports JSON, YAML, and YML formats for all sources

## 🎯 Usage

Once configured, you can interact with your OpenAPI specs using natural language in Claude Desktop:

### 🚀 Smart Discovery Queries

#### API Registry Discovery
```
"Load all APIs from the company registry and show me an overview"
"Discover APIs from the configured registry and analyze their authentication patterns"
"What APIs are available in our API registry?"
"Show me where my specs were loaded from"
```

#### Cross-API Analysis
```
"Load all my OpenAPI specs and give me a comprehensive summary"
"How many APIs do I have and what's the total number of endpoints?"
"Compare authentication schemes across all loaded APIs"
"Which APIs are using different versions of the same schema?"
```

#### Search and Discovery
```
"Show me all POST endpoints for user creation across all APIs"
"Find all endpoints related to authentication across all loaded APIs"
"Which APIs have pagination parameters?"
"Search for endpoints that handle file uploads"
"Find all APIs that use the 'User' schema"
```

#### Analysis and Comparison
```
"What authentication schemes are used across my APIs?"
"Which APIs have inconsistent naming conventions?"
"Compare the User schema across different APIs"
"Show me APIs that are still using version 1.0"
```

#### Statistics and Insights
```
"Generate comprehensive statistics about my API ecosystem"
"Which HTTP methods are most commonly used?"
"What are the most common path patterns?"
"Show me version distribution across my APIs"
```

## 🔧 Available Tools

The MCP server provides these tools for programmatic access:

| Tool | Description | Parameters |
|------|-------------|------------|
| `load_specs` | **Smart Load**: Automatically load specs using priority system (registry → URLs → folder) | None |
| `list_apis` | List all loaded APIs with basic info (title, version, endpoint count) | None |
| `get_api_spec` | Get the full OpenAPI spec for a specific file | `filename` |
| `search_endpoints` | Search endpoints by keyword across all APIs | `query` |
| `get_api_stats` | Generate comprehensive statistics about all loaded APIs | None |
| `find_inconsistencies` | Detect inconsistencies in authentication schemes | None |
| `compare_schemas` | Compare schemas with the same name across different APIs | `schema1`, `schema2` (optional) |
| `get_load_sources` | **New!** Show where specs were loaded from (registry, URLs, or folder) | None |

## 📁 Project Structure

```
openapi-analyzer-mcp/
├── src/
│   └── index.ts          # Main server implementation
├── tests/               # Comprehensive test suite
│   ├── analyzer.test.ts # Core functionality tests
│   ├── server.test.ts   # MCP server tests  
│   ├── validation.test.ts # Environment tests
│   ├── setup.ts         # Test configuration
│   └── fixtures/        # Test data files
├── dist/                # Compiled JavaScript
├── coverage/            # Test coverage reports
├── examples/            # Example configurations
│   ├── claude_desktop_config.json
│   └── sample-openapi.json
├── vitest.config.ts     # Test configuration
├── package.json
├── tsconfig.json
└── README.md
```

**Note**: You don't need an `openapi-specs` folder in this repository. Point `OPENAPI_SPECS_FOLDER` to wherever your actual OpenAPI files are located.

## 🔍 Example Output

### 🎯 Smart Discovery Results

#### Load Sources Information
```json
[
  {
    "type": "discovery",
    "url": "https://api.company.com/registry/apis.json",
    "count": 12,
    "metadata": {
      "name": "Company APIs",
      "description": "Collection of company API specifications",
      "total_apis": 12
    }
  }
]
```

#### Registry Discovery Success
```json
{
  "totalApis": 12,
  "totalEndpoints": 247,
  "loadedFrom": "API Registry",
  "discoveryUrl": "https://api.company.com/registry/apis.json",
  "apis": [
    {
      "filename": "User Management API",
      "title": "User Management API", 
      "version": "2.1.0",
      "endpointCount": 18,
      "source": "https://docs.company.com/user-api.yaml"
    },
    {
      "filename": "Product Catalog API",
      "title": "Product Catalog API",
      "version": "1.5.0", 
      "endpointCount": 32,
      "source": "https://docs.company.com/product-api.yaml"
    }
  ]
}
```

### 📊 API Statistics
```json
{
  "totalApis": 12,
  "totalEndpoints": 247,
  "methodCounts": {
    "GET": 98,
    "POST": 67,
    "PUT": 45,
    "DELETE": 37
  },
  "versions": {
    "1.0.0": 8,
    "2.0.0": 3,
    "3.1.0": 1
  },
  "commonPaths": {
    "/api/v1/users/{id}": 8,
    "/api/v1/orders": 6,
    "/health": 12
  }
}
```

### Search Results
```json
[
  {
    "filename": "user-api.json",
    "api_title": "User Management API",
    "path": "/api/v1/users",
    "method": "POST",
    "summary": "Create a new user",
    "operationId": "createUser"
  },
  {
    "filename": "admin-api.json", 
    "api_title": "Admin API",
    "path": "/admin/users",
    "method": "POST",
    "summary": "Create user account",
    "operationId": "adminCreateUser"
  }
]
```

## 🏗️ Creating Your Own API Registry

Want to set up your own `apis.json` registry? Here's how:

### Standard APIs.json Format

Create a file at `https://your-domain.com/apis.json`:

```json
{
  "name": "Your Company APIs",
  "description": "Collection of all our API specifications",
  "url": "https://your-domain.com",
  "apis": [
    {
      "name": "User API",
      "baseURL": "https://api.your-domain.com/users",
      "properties": [
        {
          "type": "Swagger",
          "url": "https://docs.your-domain.com/user-api.yaml"
        }
      ]
    },
    {
      "name": "Orders API", 
      "baseURL": "https://api.your-domain.com/orders",
      "properties": [
        {
          "type": "OpenAPI",
          "url": "https://docs.your-domain.com/orders-api.json"
        }
      ]
    }
  ]
}
```

### Custom Registry Format

Or use the simpler custom format:

```json
{
  "name": "Your Company APIs",
  "description": "Our API registry",
  "apis": [
    {
      "name": "User API",
      "version": "v2",
      "spec_url": "https://docs.your-domain.com/user-api.yaml",
      "docs_url": "https://docs.your-domain.com/user-api",
      "status": "stable",
      "tags": ["auth", "users"]
    }
  ]
}
```

## 🚨 Troubleshooting

### Tools not appearing in Claude Desktop

1. **Verify environment variables are set** - At least one source must be configured
2. **Check that URLs are accessible** - Test discovery URLs and spec URLs manually
3. **Restart Claude Desktop** completely after configuration changes
4. **Check network connectivity** for remote API registries
5. **Verify file formats** - Supports JSON, YAML, and YML

### Common Error Messages

#### Smart Discovery Errors
- **"❌ Error: No OpenAPI source configured"**: Set at least one of `OPENAPI_DISCOVERY_URL`, `OPENAPI_SPEC_URLS`, or `OPENAPI_SPECS_FOLDER`
- **"⚠️ Warning: Failed to load from discovery URL"**: Check if the registry URL is accessible and returns valid JSON
- **"Invalid registry format: missing apis array"**: Your APIs.json file must have an `apis` array
- **"No OpenAPI spec URL found"**: API entries must have either `spec_url` or `properties` with OpenAPI/Swagger type

#### Traditional Errors  
- **"❌ Error: OPENAPI_SPECS_FOLDER does not exist"**: The specified directory doesn't exist
- **"❌ Error: OPENAPI_SPECS_FOLDER is not a directory"**: The path points to a file, not a directory
- **"❌ Error: No read permission for OPENAPI_SPECS_FOLDER"**: Check folder permissions
- **"⚠️ Warning: No OpenAPI specification files found"**: Directory exists but contains no supported files
- **"⚠️ Skipping [file]: Invalid format"**: File is not valid JSON/YAML or malformed OpenAPI spec

### Debug Mode

Set `NODE_ENV=development` to see detailed logging:

```json
{
  "mcpServers": {
    "openapi-analyzer": {
      "command": "node",
      "args": ["/path/to/dist/index.js"],
      "env": {
        "OPENAPI_SPECS_FOLDER": "/path/to/specs",
        "NODE_ENV": "development"
      }
    }
  }
}
```

## 🤝 Contributing

Contributions are welcome! Please feel free to submit a Pull Request. For major changes, please open an issue first to discuss what you would like to change.

### Development Setup

```bash
git clone https://github.com/sureshkumars/openapi-analyzer-mcp.git
cd openapi-analyzer-mcp
npm install
npm run build
npm run dev  # Start in development mode
```

### Running Tests

This project includes a comprehensive test suite with 46+ tests covering all functionality:

```bash
# Run all tests
npm test

# Run tests in watch mode (re-runs on file changes)
npm run test:watch

# Run tests with coverage report
npm run test:coverage
```

#### Test Coverage

The test suite provides extensive coverage with **100% test success rate**:
- **✅ 46 tests passing** with **66.79% statement coverage** and **100% function coverage**
- **Unit tests** for the OpenAPIAnalyzer class (30 tests) - covers all loading methods and analysis features
- **Integration tests** for MCP server configuration (8 tests) - validates all tools and exports
- **Validation tests** for environment setup and error handling (8 tests) - tests all discovery methods

**New in v1.2.0:**
- ✅ **Smart discovery testing** - URL loading, API registry parsing, fallback mechanisms
- ✅ **Constructor-based testing** - Flexible test configuration without environment variables
- ✅ **Remote spec mocking** - Full coverage of HTTP-based spec loading
- ✅ **Backward compatibility** - All existing functionality preserved

#### Test Structure

```
tests/
├── analyzer.test.ts      # Core OpenAPIAnalyzer functionality tests
├── server.test.ts        # MCP server configuration tests
├── validation.test.ts    # Environment validation tests
├── setup.ts             # Test configuration
└── fixtures/            # Sample test data
    ├── sample-api.json
    ├── another-api.json
    └── invalid-api.json
```

#### What's Tested

- ✅ **OpenAPI spec loading** (valid/invalid files, JSON parsing)
- ✅ **Search functionality** (by path, method, summary, operationId)
- ✅ **Statistics generation** (method counts, versions, common paths)
- ✅ **Schema comparison** (cross-API schema analysis)
- ✅ **Inconsistency detection** (authentication schemes)
- ✅ **Error handling** (missing env vars, file permissions)
- ✅ **Edge cases** (empty directories, malformed JSON)

#### Test Technology

- **Vitest** - Fast test framework with TypeScript support
- **Comprehensive mocking** - File system operations and console output
- **Type safety** - Full TypeScript integration with proper interfaces

## 🆕 Changelog

### Version 1.2.0 - Smart Discovery System
**Released: September 2025**

#### 🎯 Major Features
- **🚀 Smart Discovery System**: Revolutionary API discovery with priority-based fallback
- **📡 API Registry Support**: Full support for `apis.json` format and custom registries  
- **🔗 URL-Based Loading**: Load specs directly from individual URLs
- **🔄 Intelligent Fallback**: Discovery URL → Individual URLs → Local folder priority system
- **🏷️ Source Tracking**: New `get_load_sources` tool shows where specs were loaded from

#### ✨ Real-World Integration
- **🏢 Production Ready**: Successfully tested with 30+ production APIs from various registries
- **📊 Bulk Processing**: Load 90+ APIs from registries in seconds
- **🌐 Universal Format Support**: JSON, YAML, YML from any source (remote or local)

#### 🧪 Enhanced Testing  
- **✅ 46 tests passing** with 100% success rate
- **📈 Improved coverage**: 66.79% statement coverage, 100% function coverage
- **🔧 Constructor-based testing**: Flexible test configuration
- **🔗 Remote spec mocking**: Full HTTP-based loading test coverage

#### 🔧 Developer Experience
- **⚡ Zero Breaking Changes**: Full backward compatibility maintained
- **📚 Comprehensive Documentation**: Updated with real-world examples
- **🏗️ Registry Setup Guide**: Instructions for creating your own APIs.json registry
- **🚨 Enhanced Error Handling**: Better error messages and graceful fallbacks

### Version 1.1.0 - YAML Support & Enhanced Analysis
- Added YAML/YML format support using @apidevtools/swagger-parser
- Enhanced schema comparison and inconsistency detection
- Improved error handling and validation

### Version 1.0.0 - Initial Release
- Core OpenAPI analysis functionality
- Local folder-based spec loading
- MCP server implementation with 6 core tools

## 📝 License

This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.

## 🙏 Acknowledgments

- Built with the [Model Context Protocol SDK](https://github.com/modelcontextprotocol/sdk)
- Supports OpenAPI specifications as defined by the [OpenAPI Initiative](https://www.openapis.org/)
- Compatible with [Claude Desktop](https://claude.ai/desktop) and other MCP clients

---

**Made with ❤️ for API developers and documentation teams**

If you find this tool helpful, please consider giving it a ⭐ on GitHub!
```

--------------------------------------------------------------------------------
/tests/fixtures/invalid-api.json:
--------------------------------------------------------------------------------

```json
{
  "title": "Invalid API",
  "version": "1.0.0",
  "paths": {}
}
```

--------------------------------------------------------------------------------
/examples/claude_desktop_config.json:
--------------------------------------------------------------------------------

```json
{
  "mcpServers": {
    "openapi-analyzer": {
      "command": "npx",
      "args": ["openapi-analyzer-mcp"],
      "env": {
        "OPENAPI_SPECS_FOLDER": "/absolute/path/to/your/openapi-specs"
      }
    }
  }
}
```

--------------------------------------------------------------------------------
/tests/setup.ts:
--------------------------------------------------------------------------------

```typescript
// Test setup file for vitest
import { beforeEach, vi } from 'vitest';

// Mock process.exit to prevent actual process termination during tests
vi.spyOn(process, 'exit').mockImplementation(() => undefined as never);

beforeEach(() => {
  // Clear environment variables
  delete process.env.OPENAPI_SPECS_FOLDER;
});
```

--------------------------------------------------------------------------------
/vitest.config.ts:
--------------------------------------------------------------------------------

```typescript
import { defineConfig } from 'vitest/config';

export default defineConfig({
  test: {
    globals: true,
    environment: 'node',
    include: ['tests/**/*.{test,spec}.{js,ts}'],
    coverage: {
      provider: 'v8',
      reporter: ['text', 'json', 'html'],
      exclude: [
        'node_modules/',
        'dist/',
        'coverage/',
        '**/*.d.ts',
        '**/*.config.*',
      ],
    },
    setupFiles: ['./tests/setup.ts'],
  },
});
```

--------------------------------------------------------------------------------
/tsconfig.json:
--------------------------------------------------------------------------------

```json
{
  "compilerOptions": {
    "target": "ES2022",
    "module": "ESNext",
    "moduleResolution": "node",
    "outDir": "./dist",
    "rootDir": "./src",
    "strict": false,
    "esModuleInterop": true,
    "skipLibCheck": true,
    "forceConsistentCasingInFileNames": true,
    "allowSyntheticDefaultImports": true,
    "declaration": true,
    "declarationMap": true,
    "sourceMap": true,
    "types": ["node"]
  },
  "include": [
    "src/**/*"
  ],
  "exclude": [
    "node_modules",
    "dist"
  ]
}
```

--------------------------------------------------------------------------------
/tests/fixtures/another-api.json:
--------------------------------------------------------------------------------

```json
{
  "openapi": "3.0.0",
  "info": {
    "title": "Another API",
    "version": "2.0.0",
    "description": "Another sample API for testing"
  },
  "paths": {
    "/products": {
      "get": {
        "summary": "Get all products",
        "description": "Retrieve a list of all products",
        "operationId": "getProducts",
        "responses": {
          "200": {
            "description": "Successful response"
          }
        }
      }
    },
    "/products/{id}": {
      "delete": {
        "summary": "Delete product",
        "description": "Delete a specific product",
        "operationId": "deleteProduct",
        "responses": {
          "204": {
            "description": "Product deleted"
          }
        }
      }
    }
  },
  "components": {
    "schemas": {
      "Product": {
        "type": "object",
        "properties": {
          "id": {
            "type": "integer"
          },
          "name": {
            "type": "string"
          },
          "price": {
            "type": "number"
          }
        }
      },
      "User": {
        "type": "object",
        "properties": {
          "id": {
            "type": "integer"
          },
          "username": {
            "type": "string"
          }
        }
      }
    },
    "securitySchemes": {
      "apiKey": {
        "type": "apiKey",
        "in": "header",
        "name": "X-API-Key"
      }
    }
  }
}
```

--------------------------------------------------------------------------------
/package.json:
--------------------------------------------------------------------------------

```json
{
  "name": "openapi-analyzer-mcp",
  "version": "1.2.1",
  "description": "A powerful Model Context Protocol (MCP) server for analyzing OpenAPI specifications with Claude Desktop and other LLM clients",
  "type": "module",
  "main": "dist/index.js",
  "bin": {
    "openapi-analyzer-mcp": "dist/index.js"
  },
  "files": [
    "dist/**/*",
    "README.md",
    "LICENSE"
  ],
  "scripts": {
    "build": "tsc && chmod +x dist/index.js",
    "start": "node dist/index.js",
    "dev": "tsc && node dist/index.js",
    "clean": "rm -rf dist",
    "prepublishOnly": "npm run clean && npm run build",
    "test": "vitest run",
    "test:watch": "vitest",
    "test:coverage": "vitest run --coverage"
  },
  "dependencies": {
    "@apidevtools/swagger-parser": "^12.0.0",
    "@modelcontextprotocol/sdk": "0.5.0"
  },
  "devDependencies": {
    "@types/node": "^20.19.13",
    "@vitest/coverage-v8": "^3.2.4",
    "typescript": "^5.0.0",
    "vitest": "^3.2.4"
  },
  "keywords": [
    "mcp",
    "openapi",
    "api",
    "analysis",
    "claude",
    "llm",
    "model-context-protocol",
    "swagger",
    "api-documentation",
    "schema-analysis",
    "endpoint-discovery"
  ],
  "author": "Suresh Sivasankaran <[email protected]>",
  "license": "MIT",
  "repository": {
    "type": "git",
    "url": "git+https://github.com/sureshkumars/openapi-analyzer-mcp.git"
  },
  "homepage": "https://github.com/sureshkumars/openapi-analyzer-mcp#readme",
  "bugs": {
    "url": "https://github.com/sureshkumars/openapi-analyzer-mcp/issues"
  },
  "engines": {
    "node": ">=18.0.0"
  }
}

```

--------------------------------------------------------------------------------
/tests/fixtures/sample-api.json:
--------------------------------------------------------------------------------

```json
{
  "openapi": "3.0.0",
  "info": {
    "title": "Sample API",
    "version": "1.0.0",
    "description": "A sample API for testing"
  },
  "paths": {
    "/users": {
      "get": {
        "summary": "Get all users",
        "description": "Retrieve a list of all users",
        "operationId": "getUsers",
        "responses": {
          "200": {
            "description": "Successful response"
          }
        }
      },
      "post": {
        "summary": "Create user",
        "description": "Create a new user",
        "operationId": "createUser",
        "responses": {
          "201": {
            "description": "User created"
          }
        }
      }
    },
    "/users/{id}": {
      "get": {
        "summary": "Get user by ID",
        "description": "Retrieve a specific user by ID",
        "operationId": "getUserById",
        "parameters": [
          {
            "name": "id",
            "in": "path",
            "required": true,
            "schema": {
              "type": "integer"
            }
          }
        ],
        "responses": {
          "200": {
            "description": "Successful response"
          },
          "404": {
            "description": "User not found"
          }
        }
      }
    }
  },
  "components": {
    "schemas": {
      "User": {
        "type": "object",
        "properties": {
          "id": {
            "type": "integer"
          },
          "name": {
            "type": "string"
          },
          "email": {
            "type": "string"
          }
        }
      }
    },
    "securitySchemes": {
      "bearerAuth": {
        "type": "http",
        "scheme": "bearer"
      }
    }
  }
}
```

--------------------------------------------------------------------------------
/tests/server.test.ts:
--------------------------------------------------------------------------------

```typescript
import { describe, it, expect, beforeEach, afterEach, vi } from 'vitest';
import fs from 'fs/promises';

// Mock fs module
vi.mock('fs/promises');
const mockedFs = vi.mocked(fs);

// Mock console methods to avoid cluttering test output
const mockConsoleError = vi.spyOn(console, 'error').mockImplementation(() => {});

// Mock the MCP SDK components
const mockServer = {
  setRequestHandler: vi.fn(),
  connect: vi.fn()
};

const mockTransport = {};

vi.mock('@modelcontextprotocol/sdk/server/index.js', () => ({
  Server: vi.fn().mockImplementation(() => mockServer)
}));

vi.mock('@modelcontextprotocol/sdk/server/stdio.js', () => ({
  StdioServerTransport: vi.fn().mockImplementation(() => mockTransport)
}));

vi.mock('@modelcontextprotocol/sdk/types.js', () => ({
  ListToolsRequestSchema: 'ListToolsRequestSchema',
  CallToolRequestSchema: 'CallToolRequestSchema'
}));

describe('MCP Server Configuration', () => {
  beforeEach(() => {
    vi.clearAllMocks();
    mockConsoleError.mockClear();
    process.env.OPENAPI_SPECS_FOLDER = '/test/specs';

    // Reset mocks
    mockServer.setRequestHandler.mockClear();
    mockServer.connect.mockClear();
  });

  afterEach(() => {
    delete process.env.OPENAPI_SPECS_FOLDER;
  });

  it('should create server instance with correct configuration', async () => {
    const { Server } = await import('@modelcontextprotocol/sdk/server/index.js');
    
    // Import the module which creates the server instance
    await import('../src/index.js');
    
    // Server should be created with correct configuration
    expect(Server).toHaveBeenCalledWith(
      {
        name: 'openapi-analyzer',
        version: '1.0.0',
      },
      {
        capabilities: {
          tools: {},
        },
      }
    );
  });

  it('should define all required MCP tools', () => {
    // Test that we define all the required tools for MCP
    const requiredTools = [
      'load_specs',
      'list_apis', 
      'get_api_spec',
      'search_endpoints',
      'get_api_stats',
      'find_inconsistencies',
      'compare_schemas'
    ];

    // These tools should exist (this validates our design)
    expect(requiredTools).toHaveLength(7);
    requiredTools.forEach(toolName => {
      expect(typeof toolName).toBe('string');
      expect(toolName).toBeTruthy();
    });
  });

  it('should validate tool schemas have required properties', () => {
    // Test the structure of tool schemas we would define
    const toolSchemas = [
      {
        name: 'get_api_spec',
        requiredParams: ['filename']
      },
      {
        name: 'search_endpoints', 
        requiredParams: ['query']
      },
      {
        name: 'compare_schemas',
        requiredParams: ['schema1']
      }
    ];

    toolSchemas.forEach(({ name, requiredParams }) => {
      expect(name).toBeTruthy();
      expect(requiredParams).toBeInstanceOf(Array);
      expect(requiredParams.length).toBeGreaterThan(0);
    });
  });

  it('should handle MCP response format correctly', () => {
    // Test that responses follow MCP format
    const successResponse = {
      content: [
        {
          type: 'text',
          text: JSON.stringify({ result: 'success' }, null, 2),
        },
      ],
    };

    expect(successResponse.content).toHaveLength(1);
    expect(successResponse.content[0].type).toBe('text');
    expect(successResponse.content[0].text).toContain('result');

    // Test error response format
    const errorResponse = {
      content: [
        {
          type: 'text',
          text: 'Error: Something went wrong',
        },
      ],
    };

    expect(errorResponse.content).toHaveLength(1);
    expect(errorResponse.content[0].type).toBe('text');
    expect(errorResponse.content[0].text).toContain('Error:');
  });

  it('should handle JSON serialization in responses', () => {
    const testData = {
      apis: [
        { filename: 'test.json', title: 'Test API', version: '1.0.0' }
      ]
    };

    const serialized = JSON.stringify(testData, null, 2);
    expect(serialized).toContain('Test API');
    expect(serialized).toContain('1.0.0');

    const parsed = JSON.parse(serialized);
    expect(parsed.apis).toHaveLength(1);
    expect(parsed.apis[0].title).toBe('Test API');
  });

  it('should validate environment requirements', async () => {
    // Test that validateConfiguration is exported from the module
    const { validateConfiguration } = await import('../src/index.js');
    expect(validateConfiguration).toBeDefined();
    expect(typeof validateConfiguration).toBe('function');
  });

  it('should export OpenAPIAnalyzer class', async () => {
    // Test that the main functionality is exported
    const { OpenAPIAnalyzer } = await import('../src/index.js');
    expect(OpenAPIAnalyzer).toBeDefined();
    expect(typeof OpenAPIAnalyzer).toBe('function'); // Constructor function
    
    // Should be able to instantiate
    const analyzer = new OpenAPIAnalyzer();
    expect(analyzer).toBeInstanceOf(OpenAPIAnalyzer);
  });

  it('should export TypeScript interfaces', async () => {
    // Test that types can be imported (this validates exports)
    const module = await import('../src/index.js');
    
    // Key exports should exist
    expect(module.OpenAPIAnalyzer).toBeDefined();
    expect(module.validateConfiguration).toBeDefined();
    
    // These would be type-only imports in real usage, but we validate the structure
    const testApiSummary: any = {
      filename: 'test.json',
      title: 'Test API', 
      version: '1.0.0',
      description: 'Test description',
      endpointCount: 5
    };
    
    expect(testApiSummary.filename).toBeTruthy();
    expect(testApiSummary.endpointCount).toBeGreaterThan(0);
  });
});
```

--------------------------------------------------------------------------------
/examples/sample-openapi.json:
--------------------------------------------------------------------------------

```json
{
  "openapi": "3.0.3",
  "info": {
    "title": "Sample Pet Store API",
    "description": "A sample API that demonstrates OpenAPI features",
    "version": "1.0.0",
    "contact": {
      "name": "API Support",
      "email": "[email protected]"
    }
  },
  "servers": [
    {
      "url": "https://api.petstore.com/v1",
      "description": "Production server"
    }
  ],
  "paths": {
    "/pets": {
      "get": {
        "summary": "List all pets",
        "description": "Retrieve a paginated list of pets",
        "operationId": "listPets",
        "parameters": [
          {
            "name": "limit",
            "in": "query",
            "description": "Number of pets to return",
            "schema": {
              "type": "integer",
              "default": 10
            }
          }
        ],
        "responses": {
          "200": {
            "description": "A list of pets",
            "content": {
              "application/json": {
                "schema": {
                  "type": "array",
                  "items": {
                    "$ref": "#/components/schemas/Pet"
                  }
                }
              }
            }
          }
        }
      },
      "post": {
        "summary": "Create a pet",
        "description": "Add a new pet to the store",
        "operationId": "createPet",
        "requestBody": {
          "required": true,
          "content": {
            "application/json": {
              "schema": {
                "$ref": "#/components/schemas/NewPet"
              }
            }
          }
        },
        "responses": {
          "201": {
            "description": "Pet created successfully",
            "content": {
              "application/json": {
                "schema": {
                  "$ref": "#/components/schemas/Pet"
                }
              }
            }
          }
        }
      }
    },
    "/pets/{petId}": {
      "get": {
        "summary": "Get a pet by ID",
        "description": "Retrieve a specific pet by its ID",
        "operationId": "getPetById",
        "parameters": [
          {
            "name": "petId",
            "in": "path",
            "required": true,
            "description": "ID of the pet to retrieve",
            "schema": {
              "type": "integer",
              "format": "int64"
            }
          }
        ],
        "responses": {
          "200": {
            "description": "Pet found",
            "content": {
              "application/json": {
                "schema": {
                  "$ref": "#/components/schemas/Pet"
                }
              }
            }
          },
          "404": {
            "description": "Pet not found"
          }
        }
      },
      "put": {
        "summary": "Update a pet",
        "description": "Update an existing pet",
        "operationId": "updatePet",
        "parameters": [
          {
            "name": "petId",
            "in": "path",
            "required": true,
            "description": "ID of the pet to update",
            "schema": {
              "type": "integer",
              "format": "int64"
            }
          }
        ],
        "requestBody": {
          "required": true,
          "content": {
            "application/json": {
              "schema": {
                "$ref": "#/components/schemas/NewPet"
              }
            }
          }
        },
        "responses": {
          "200": {
            "description": "Pet updated successfully",
            "content": {
              "application/json": {
                "schema": {
                  "$ref": "#/components/schemas/Pet"
                }
              }
            }
          },
          "404": {
            "description": "Pet not found"
          }
        }
      },
      "delete": {
        "summary": "Delete a pet",
        "description": "Remove a pet from the store",
        "operationId": "deletePet",
        "parameters": [
          {
            "name": "petId",
            "in": "path",
            "required": true,
            "description": "ID of the pet to delete",
            "schema": {
              "type": "integer",
              "format": "int64"
            }
          }
        ],
        "responses": {
          "204": {
            "description": "Pet deleted successfully"
          },
          "404": {
            "description": "Pet not found"
          }
        }
      }
    }
  },
  "components": {
    "schemas": {
      "Pet": {
        "type": "object",
        "required": ["id", "name"],
        "properties": {
          "id": {
            "type": "integer",
            "format": "int64",
            "description": "Unique identifier for the pet"
          },
          "name": {
            "type": "string",
            "description": "Name of the pet"
          },
          "tag": {
            "type": "string",
            "description": "Tag to categorize the pet"
          },
          "status": {
            "type": "string",
            "enum": ["available", "pending", "sold"],
            "description": "Pet status in the store"
          }
        }
      },
      "NewPet": {
        "type": "object",
        "required": ["name"],
        "properties": {
          "name": {
            "type": "string",
            "description": "Name of the pet"
          },
          "tag": {
            "type": "string",
            "description": "Tag to categorize the pet"
          },
          "status": {
            "type": "string",
            "enum": ["available", "pending", "sold"],
            "default": "available",
            "description": "Pet status in the store"
          }
        }
      }
    },
    "securitySchemes": {
      "ApiKeyAuth": {
        "type": "apiKey",
        "in": "header",
        "name": "X-API-Key"
      }
    }
  },
  "security": [
    {
      "ApiKeyAuth": []
    }
  ]
}
```

--------------------------------------------------------------------------------
/tests/validation.test.ts:
--------------------------------------------------------------------------------

```typescript
import { describe, it, expect, beforeEach, vi } from 'vitest';
import fs from 'fs/promises';

// Mock fs module
vi.mock('fs/promises');
const mockedFs = vi.mocked(fs);

describe('Environment Validation', () => {
  beforeEach(() => {
    vi.clearAllMocks();
    // Clean environment
    delete process.env.OPENAPI_SPECS_FOLDER;
  });

  describe('validateSpecsFolder', () => {
    it('should validate existing readable directory', async () => {
      process.env.OPENAPI_SPECS_FOLDER = '/valid/path';
      
      mockedFs.stat.mockResolvedValue({
        isDirectory: () => true
      } as any);
      mockedFs.access.mockResolvedValue();

      // Test passes if no error is thrown
      expect(process.env.OPENAPI_SPECS_FOLDER).toBe('/valid/path');
    });

    it('should handle missing environment variable', async () => {
      const consoleSpy = vi.spyOn(console, 'error').mockImplementation(() => {});
      const exitSpy = vi.spyOn(process, 'exit').mockImplementation((code) => {
        throw new Error(`Process exit with code ${code}`);
      });

      expect(() => {
        // This would normally trigger validation in the real module
        if (!process.env.OPENAPI_SPECS_FOLDER) {
          console.error('❌ Error: OPENAPI_SPECS_FOLDER environment variable is required');
          process.exit(1);
        }
      }).toThrow('Process exit with code 1');

      expect(consoleSpy).toHaveBeenCalledWith(
        '❌ Error: OPENAPI_SPECS_FOLDER environment variable is required'
      );

      consoleSpy.mockRestore();
      exitSpy.mockRestore();
    });

    it('should handle non-existent directory', async () => {
      process.env.OPENAPI_SPECS_FOLDER = '/non/existent/path';
      
      mockedFs.stat.mockRejectedValue({ code: 'ENOENT' });
      
      const consoleSpy = vi.spyOn(console, 'error').mockImplementation(() => {});
      const exitSpy = vi.spyOn(process, 'exit').mockImplementation((code) => {
        throw new Error(`Process exit with code ${code}`);
      });

      try {
        await mockedFs.stat(process.env.OPENAPI_SPECS_FOLDER);
      } catch (error: any) {
        if (error.code === 'ENOENT') {
          console.error(`❌ Error: OPENAPI_SPECS_FOLDER does not exist: ${process.env.OPENAPI_SPECS_FOLDER}`);
          expect(() => process.exit(1)).toThrow('Process exit with code 1');
        }
      }

      expect(consoleSpy).toHaveBeenCalledWith(
        '❌ Error: OPENAPI_SPECS_FOLDER does not exist: /non/existent/path'
      );

      consoleSpy.mockRestore();
      exitSpy.mockRestore();
    });

    it('should handle path that is not a directory', async () => {
      process.env.OPENAPI_SPECS_FOLDER = '/path/to/file';
      
      mockedFs.stat.mockResolvedValue({
        isDirectory: () => false
      } as any);
      
      const consoleSpy = vi.spyOn(console, 'error').mockImplementation(() => {});
      const exitSpy = vi.spyOn(process, 'exit').mockImplementation((code) => {
        throw new Error(`Process exit with code ${code}`);
      });

      try {
        const stats = await mockedFs.stat(process.env.OPENAPI_SPECS_FOLDER);
        if (!stats.isDirectory()) {
          console.error(`❌ Error: OPENAPI_SPECS_FOLDER is not a directory: ${process.env.OPENAPI_SPECS_FOLDER}`);
          expect(() => process.exit(1)).toThrow('Process exit with code 1');
        }
      } catch (error) {
        // Expected behavior
      }

      expect(consoleSpy).toHaveBeenCalledWith(
        '❌ Error: OPENAPI_SPECS_FOLDER is not a directory: /path/to/file'
      );

      consoleSpy.mockRestore();
      exitSpy.mockRestore();
    });

    it('should handle permission denied', async () => {
      process.env.OPENAPI_SPECS_FOLDER = '/protected/path';
      
      mockedFs.stat.mockResolvedValue({
        isDirectory: () => true
      } as any);
      mockedFs.access.mockRejectedValue({ code: 'EACCES' });
      
      const consoleSpy = vi.spyOn(console, 'error').mockImplementation(() => {});
      const exitSpy = vi.spyOn(process, 'exit').mockImplementation((code) => {
        throw new Error(`Process exit with code ${code}`);
      });

      try {
        const stats = await mockedFs.stat(process.env.OPENAPI_SPECS_FOLDER);
        if (stats.isDirectory()) {
          await mockedFs.access(process.env.OPENAPI_SPECS_FOLDER, fs.constants.R_OK);
        }
      } catch (error: any) {
        if (error.code === 'EACCES') {
          console.error(`❌ Error: No read permission for OPENAPI_SPECS_FOLDER: ${process.env.OPENAPI_SPECS_FOLDER}`);
          expect(() => process.exit(1)).toThrow('Process exit with code 1');
        }
      }

      expect(consoleSpy).toHaveBeenCalledWith(
        '❌ Error: No read permission for OPENAPI_SPECS_FOLDER: /protected/path'
      );

      consoleSpy.mockRestore();
      exitSpy.mockRestore();
    });
  });

  describe('File Processing', () => {
    beforeEach(() => {
      process.env.OPENAPI_SPECS_FOLDER = '/test/specs';
      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
    });

    it('should filter JSON files correctly', async () => {
      mockedFs.readdir.mockResolvedValue([
        'api1.json',
        'api2.json',
        'readme.txt',
        'schema.yaml',
        'config.json'
      ] as any);

      const files = await mockedFs.readdir('/test/specs');
      const jsonFiles = files.filter((file: string) => file.endsWith('.json'));

      expect(jsonFiles).toEqual(['api1.json', 'api2.json', 'config.json']);
      expect(jsonFiles).toHaveLength(3);
    });

    it('should handle empty directory', async () => {
      mockedFs.readdir.mockResolvedValue([] as any);

      const consoleSpy = vi.spyOn(console, 'error').mockImplementation(() => {});

      const files = await mockedFs.readdir('/test/specs');
      const jsonFiles = files.filter((file: string) => file.endsWith('.json'));

      if (jsonFiles.length === 0) {
        console.error('⚠️  Warning: No .json files found in /test/specs');
      }

      expect(jsonFiles).toHaveLength(0);
      expect(consoleSpy).toHaveBeenCalledWith(
        '⚠️  Warning: No .json files found in /test/specs'
      );

      consoleSpy.mockRestore();
    });

    it('should handle directory with only non-JSON files', async () => {
      mockedFs.readdir.mockResolvedValue([
        'readme.md',
        'config.yaml',
        'script.py'
      ] as any);

      const consoleSpy = vi.spyOn(console, 'error').mockImplementation(() => {});

      const files = await mockedFs.readdir('/test/specs');
      const jsonFiles = files.filter((file: string) => file.endsWith('.json'));

      if (jsonFiles.length === 0) {
        console.error('⚠️  Warning: No .json files found in /test/specs');
      }

      expect(jsonFiles).toHaveLength(0);
      expect(consoleSpy).toHaveBeenCalledWith(
        '⚠️  Warning: No .json files found in /test/specs'
      );

      consoleSpy.mockRestore();
    });
  });
});
```

--------------------------------------------------------------------------------
/tests/analyzer.test.ts:
--------------------------------------------------------------------------------

```typescript
import { describe, it, expect, beforeEach, afterEach, vi } from 'vitest';
import fs from 'fs/promises';
import type { 
  ApiSummary,
  SearchResult,
  ApiStats,
  Inconsistency,
  SchemaComparison
} from '../src/index';

// Mock fs module
vi.mock('fs/promises');
const mockedFs = vi.mocked(fs);

// Mock swagger parser
vi.mock('@apidevtools/swagger-parser', () => ({
  default: {
    parse: vi.fn()
  }
}));

// Mock fetch for remote URL testing
global.fetch = vi.fn();
const mockedFetch = vi.mocked(fetch);

import SwaggerParser from '@apidevtools/swagger-parser';
const mockedSwaggerParser = vi.mocked(SwaggerParser);

import { OpenAPIAnalyzer } from '../src/index';

// Mock console methods to avoid cluttering test output
const mockConsoleError = vi.spyOn(console, 'error').mockImplementation(() => {});

describe('OpenAPIAnalyzer', () => {
  let analyzer: OpenAPIAnalyzer;

  beforeEach(() => {
    vi.clearAllMocks();
    mockConsoleError.mockClear();
    mockedSwaggerParser.parse.mockClear();
    mockedFetch.mockClear();
    
    // Create default analyzer with local folder for tests
    analyzer = new OpenAPIAnalyzer({
      specsFolder: '/test/folder'
    });
  });

  describe('loadSpecs', () => {
    it('should load valid OpenAPI specifications from local folder', async () => {
      const sampleApiSpec = {
        openapi: '3.0.0',
        info: { title: 'Test API', version: '1.0.0' },
        paths: {
          '/users': {
            get: { summary: 'Get users' }
          }
        }
      };

      // Mock local folder operations
      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['sample-api.json', 'other-file.txt'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(sampleApiSpec as any);

      await analyzer.loadSpecs();

      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(1);
      expect(specs[0].filename).toBe('sample-api.json');
      expect(specs[0].title).toBe('Test API');
    });

    it('should skip invalid JSON files', async () => {
      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['invalid.json'] as any);
      mockedSwaggerParser.parse.mockRejectedValue(new Error('Invalid JSON'));

      await analyzer.loadSpecs();

      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(0);
      expect(mockConsoleError).toHaveBeenCalledWith('⚠️  Skipping invalid.json: Invalid JSON format or malformed OpenAPI spec');
    });

    it('should skip files without openapi or swagger field', async () => {
      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['invalid-api.json'] as any);
      mockedSwaggerParser.parse.mockRejectedValue(new Error('Not an OpenAPI specification'));

      await analyzer.loadSpecs();

      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(0);
      expect(mockConsoleError).toHaveBeenCalledWith('⚠️  Skipping invalid-api.json: Invalid JSON format or malformed OpenAPI spec');
    });

    it('should load specs with swagger field', async () => {
      const swaggerApiSpec = {
        swagger: '2.0',
        info: { title: 'Swagger API', version: '1.0.0' },
        paths: {
          '/users': { get: { summary: 'Get users' } }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['swagger-api.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(swaggerApiSpec as any);

      await analyzer.loadSpecs();

      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(1);
      expect(specs[0].filename).toBe('swagger-api.json');
      expect(specs[0].title).toBe('Swagger API');
    });

    it('should handle specs without info section', async () => {
      const apiWithoutInfo = {
        openapi: '3.0.0',
        paths: {
          '/test': {
            get: { summary: 'Test endpoint' }
          }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['no-info.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiWithoutInfo as any);

      await analyzer.loadSpecs();

      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(1);
      expect(specs[0].title).toBe('No title'); // Default title when no info section
    });

    it('should handle specs with no paths', async () => {
      const apiWithoutPaths = {
        openapi: '3.0.0',
        info: { title: 'No Paths API', version: '1.0.0' }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['no-paths.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiWithoutPaths as any);

      await analyzer.loadSpecs();

      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(1);
      expect(specs[0].title).toBe('No Paths API');
    });
  });

  describe('listAllSpecs', () => {
    it('should return empty array when no specs loaded', () => {
      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(0);
    });

    it('should return spec summaries', async () => {
      const apiSpec = {
        openapi: '3.0.0',
        info: { 
          title: 'Test API', 
          version: '1.0.0',
          description: 'A test API'
        },
        paths: {
          '/users': { get: {}, post: {} },
          '/posts': { get: {} }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['test.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiSpec as any);
      await analyzer.loadSpecs();

      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(1);
      expect(specs[0].filename).toBe('test.json');
      expect(specs[0].title).toBe('Test API');
      expect(specs[0].version).toBe('1.0.0');
      expect(specs[0].description).toBe('A test API');
      expect(specs[0].endpointCount).toBe(2); // 2 paths: /users and /posts
    });
  });

  describe('getSpecByFilename', () => {
    it('should return null for non-existent spec', () => {
      const spec = analyzer.getSpecByFilename('nonexistent.json');
      expect(spec).toBeNull();
    });

    it('should return the correct spec', async () => {
      const apiSpec = {
        openapi: '3.0.0',
        info: { title: 'Test API', version: '1.0.0' },
        paths: {}
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['test.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiSpec as any);
      await analyzer.loadSpecs();

      const spec = analyzer.getSpecByFilename('test.json');
      expect(spec).toEqual(apiSpec);
    });
  });

  describe('searchEndpoints', () => {
    beforeEach(async () => {
      const apiSpec = {
        openapi: '3.0.0',
        info: { title: 'Test API', version: '1.0.0' },
        paths: {
          '/users': {
            get: { 
              summary: 'Get all users',
              description: 'Retrieve list of users',
              operationId: 'getUsers'
            },
            post: {
              summary: 'Create user',
              description: 'Create a new user',
              operationId: 'createUser'
            }
          },
          '/posts': {
            get: {
              summary: 'Get posts',
              description: 'Retrieve blog posts',
              operationId: 'getPosts'
            }
          }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['test.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiSpec as any);
      await analyzer.loadSpecs();
    });

    it('should find endpoints by path', () => {
      const results: SearchResult[] = analyzer.searchEndpoints('users');
      expect(results).toHaveLength(2);
      expect(results[0].path).toBe('/users');
      expect(results[1].path).toBe('/users');
      expect(results[0].method).toBe('GET');
      expect(results[1].method).toBe('POST');
    });

    it('should find endpoints by method', () => {
      const results: SearchResult[] = analyzer.searchEndpoints('get');
      expect(results).toHaveLength(2);
      expect(results[0].method).toBe('GET');
      expect(results[1].method).toBe('GET');
    });

    it('should find endpoints by summary', () => {
      const results: SearchResult[] = analyzer.searchEndpoints('Create user');
      expect(results).toHaveLength(1);
      expect(results[0].path).toBe('/users');
      expect(results[0].method).toBe('POST');
    });

    it('should find endpoints by operation ID', () => {
      const results: SearchResult[] = analyzer.searchEndpoints('createUser');
      expect(results).toHaveLength(1);
      expect(results[0].path).toBe('/users');
      expect(results[0].method).toBe('POST');
    });

    it('should return empty array for no matches', () => {
      const results: SearchResult[] = analyzer.searchEndpoints('nonexistent');
      expect(results).toHaveLength(0);
    });

    it('should be case insensitive', () => {
      const results: SearchResult[] = analyzer.searchEndpoints('USERS');
      expect(results).toHaveLength(2);
    });
  });

  describe('getApiStats', () => {
    it('should return empty stats for no specs', () => {
      const stats: ApiStats = analyzer.getApiStats();
      expect(stats.totalApis).toBe(0);
      expect(stats.totalEndpoints).toBe(0);
      expect(stats.methodCounts).toEqual({});
      expect(stats.versions).toEqual({});
      expect(stats.commonPaths).toEqual({});
    });

    it('should calculate correct statistics', async () => {
      const apiSpec = {
        openapi: '3.0.0',
        info: { title: 'Test API', version: '1.0.0' },
        paths: {
          '/users': {
            get: { summary: 'Get users' },
            post: { summary: 'Create user' },
            put: { summary: 'Update user' },
            delete: { summary: 'Delete user' }
          },
          '/posts': {
            get: { summary: 'Get posts' },
            post: { summary: 'Create post' }
          },
          '/comments': {
            get: { summary: 'Get comments' }
          }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['test.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiSpec as any);
      await analyzer.loadSpecs();

      const stats: ApiStats = analyzer.getApiStats();

      expect(stats.totalApis).toBe(1);
      expect(stats.totalEndpoints).toBe(7);
      expect(stats.methodCounts).toEqual({
        GET: 3,
        POST: 2,
        PUT: 1,
        DELETE: 1
      });
      expect(stats.versions).toEqual({
        '1.0.0': 1
      });
      expect(stats.commonPaths).toEqual({
        '/users': 1,
        '/posts': 1,
        '/comments': 1
      });
    });

    it('should handle multiple APIs with different versions', async () => {
      const api1Spec = {
        openapi: '3.0.0',
        info: { title: 'API 1', version: '1.0.0' },
        paths: { '/users': { get: {}, post: {} } }
      };

      const api2Spec = {
        openapi: '3.0.0',
        info: { title: 'API 2', version: '2.0.0' },
        paths: { '/products': { get: {} } }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['api1.json', 'api2.json'] as any);
      mockedSwaggerParser.parse
        .mockResolvedValueOnce(api1Spec as any)
        .mockResolvedValueOnce(api2Spec as any);
      await analyzer.loadSpecs();

      const stats: ApiStats = analyzer.getApiStats();

      expect(stats.totalApis).toBe(2);
      expect(stats.totalEndpoints).toBe(3);
      expect(stats.versions).toEqual({
        '1.0.0': 1,
        '2.0.0': 1
      });
    });
  });

  describe('findInconsistencies', () => {
    it('should find authentication inconsistencies', async () => {
      const api1Spec = {
        openapi: '3.0.0',
        info: { title: 'API 1', version: '1.0.0' },
        components: {
          securitySchemes: {
            bearerAuth: { type: 'http', scheme: 'bearer' }
          }
        }
      };

      const api2Spec = {
        openapi: '3.0.0',
        info: { title: 'API 2', version: '1.0.0' },
        components: {
          securitySchemes: {
            apiKeyAuth: { type: 'apiKey', in: 'header', name: 'X-API-Key' }
          }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['api1.json', 'api2.json'] as any);
      mockedSwaggerParser.parse
        .mockResolvedValueOnce(api1Spec as any)
        .mockResolvedValueOnce(api2Spec as any);
      await analyzer.loadSpecs();

      const inconsistencies: Inconsistency[] = analyzer.findInconsistencies();

      expect(inconsistencies).toHaveLength(1);
      expect(inconsistencies[0].type).toBe('authentication');
      expect(inconsistencies[0].message).toContain('Multiple authentication schemes');
    });

    it('should return no inconsistencies for consistent auth', async () => {
      const api1Spec = {
        openapi: '3.0.0',
        info: { title: 'API 1', version: '1.0.0' },
        components: {
          securitySchemes: {
            bearerAuth: { type: 'http', scheme: 'bearer' }
          }
        }
      };

      const api2Spec = {
        openapi: '3.0.0',
        info: { title: 'API 2', version: '1.0.0' },
        components: {
          securitySchemes: {
            bearerAuth: { type: 'http', scheme: 'bearer' }
          }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['api1.json', 'api2.json'] as any);
      mockedSwaggerParser.parse
        .mockResolvedValueOnce(api1Spec as any)
        .mockResolvedValueOnce(api2Spec as any);
      await analyzer.loadSpecs();

      const inconsistencies: Inconsistency[] = analyzer.findInconsistencies();
      expect(inconsistencies).toHaveLength(0);
    });

    it('should return no inconsistencies when no security schemes exist', async () => {
      const apiSpec = {
        openapi: '3.0.0',
        info: { title: 'API', version: '1.0.0' },
        paths: { '/test': { get: {} } }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['api.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiSpec as any);
      await analyzer.loadSpecs();

      const inconsistencies: Inconsistency[] = analyzer.findInconsistencies();
      expect(inconsistencies).toHaveLength(0);
    });
  });

  describe('compareSchemas', () => {
    beforeEach(async () => {
      const api1Spec = {
        openapi: '3.0.0',
        info: { title: 'API 1', version: '1.0.0' },
        components: {
          schemas: {
            User: {
              type: 'object',
              properties: {
                id: { type: 'integer' },
                name: { type: 'string' }
              }
            },
            Product: {
              type: 'object',
              properties: {
                id: { type: 'integer' },
                title: { type: 'string' }
              }
            }
          }
        }
      };

      const api2Spec = {
        openapi: '3.0.0',
        info: { title: 'API 2', version: '1.0.0' },
        components: {
          schemas: {
            User: {
              type: 'object',
              properties: {
                id: { type: 'integer' },
                email: { type: 'string' }
              }
            }
          }
        }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['api1.json', 'api2.json'] as any);
      mockedSwaggerParser.parse
        .mockResolvedValueOnce(api1Spec as any)
        .mockResolvedValueOnce(api2Spec as any);
      await analyzer.loadSpecs();
    });

    it('should compare single schema across APIs', () => {
      const results: SchemaComparison[] = analyzer.compareSchemas('User', '');
      expect(results).toHaveLength(2);
      expect(results.every(r => r.schemaName === 'User')).toBe(true);
    });

    it('should compare two different schemas', () => {
      const results: SchemaComparison[] = analyzer.compareSchemas('User', 'Product');
      expect(results).toHaveLength(3); // User from both APIs + Product from API 1
    });

    it('should return empty array for non-existent schema', () => {
      const results: SchemaComparison[] = analyzer.compareSchemas('NonExistent', '');
      expect(results).toHaveLength(0);
    });

    it('should handle APIs without components/schemas', async () => {
      const apiWithoutSchemas = {
        openapi: '3.0.0',
        info: { title: 'Simple API', version: '1.0.0' },
        paths: { '/test': { get: {} } }
      };

      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockResolvedValue();
      mockedFs.readdir.mockResolvedValue(['simple.json'] as any);
      mockedSwaggerParser.parse.mockResolvedValue(apiWithoutSchemas as any);

      const simpleAnalyzer = new OpenAPIAnalyzer();
      await simpleAnalyzer.loadSpecs();

      const results: SchemaComparison[] = simpleAnalyzer.compareSchemas('User', '');
      expect(results).toHaveLength(0);
    });
  });

  describe('OpenAPIAnalyzer validation', () => {
    it('should not load anything when no configuration is provided', async () => {
      analyzer = new OpenAPIAnalyzer(); // No constructor options
      
      await analyzer.loadSpecs();
      
      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(0);
    });

    it('should handle non-existent directory gracefully', async () => {
      analyzer = new OpenAPIAnalyzer({ specsFolder: '/nonexistent' });
      mockedFs.stat.mockRejectedValue(Object.assign(new Error('ENOENT: no such file or directory'), { code: 'ENOENT' }));
      
      await analyzer.loadSpecs();
      
      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(0);
    });

    it('should handle non-directory path gracefully', async () => {
      analyzer = new OpenAPIAnalyzer({ specsFolder: '/some/file.txt' });
      mockedFs.stat.mockResolvedValue({ isDirectory: () => false } as any);
      
      await analyzer.loadSpecs();
      
      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(0);
    });

    it('should handle permission denied gracefully', async () => {
      analyzer = new OpenAPIAnalyzer({ specsFolder: '/no/permission' });
      mockedFs.stat.mockResolvedValue({ isDirectory: () => true } as any);
      mockedFs.access.mockRejectedValue(Object.assign(new Error('EACCES: permission denied'), { code: 'EACCES' }));
      
      await analyzer.loadSpecs();
      
      const specs = analyzer.listAllSpecs();
      expect(specs).toHaveLength(0);
    });
  });
});
```

--------------------------------------------------------------------------------
/src/index.ts:
--------------------------------------------------------------------------------

```typescript
#!/usr/bin/env node

import { Server } from '@modelcontextprotocol/sdk/server/index.js';
import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
import {
  CallToolRequestSchema,
  ListToolsRequestSchema,
  Tool,
} from '@modelcontextprotocol/sdk/types.js';
import fs from 'fs/promises';
import path from 'path';
import SwaggerParser from '@apidevtools/swagger-parser';

/**
 * OpenAPI Analyzer MCP Server - A Model Context Protocol server for analyzing OpenAPI specifications
 * 
 * This server provides tools to load, analyze, and compare OpenAPI specification files,
 * enabling natural language queries about API structures, endpoints, and inconsistencies.
 */

// Configuration - Priority order: Discovery URL -> Individual URLs -> Local folder
const DISCOVERY_URL = process.env.OPENAPI_DISCOVERY_URL;
const SPEC_URLS = process.env.OPENAPI_SPEC_URLS?.split(',').map(url => url.trim()).filter(Boolean) || [];
const SPECS_FOLDER = process.env.OPENAPI_SPECS_FOLDER;

/**
 * Validate that at least one configuration source is available
 */
export async function validateConfiguration(): Promise<void> {
  if (!DISCOVERY_URL && SPEC_URLS.length === 0 && !SPECS_FOLDER) {
    console.error('❌ Error: No OpenAPI source configured');
    console.error('');
    console.error('Please set at least one of the following environment variables:');
    console.error('');
    console.error('1. OPENAPI_DISCOVERY_URL - URL to API registry (apis.json or custom format)');
    console.error('   Example: OPENAPI_DISCOVERY_URL=https://docs.company.com/apis.json');
    console.error('');
    console.error('2. OPENAPI_SPEC_URLS - Comma-separated list of OpenAPI spec URLs');
    console.error('   Example: OPENAPI_SPEC_URLS=https://api.com/v1/spec.yaml,https://api.com/v2/spec.yaml');
    console.error('');
    console.error('3. OPENAPI_SPECS_FOLDER - Local folder with OpenAPI files');
    console.error('   Example: OPENAPI_SPECS_FOLDER=/absolute/path/to/your/specs');
    console.error('');
    console.error('Priority order: Discovery URL → Individual URLs → Local folder');
    process.exit(1);
  }
}

/**
 * Validate the local specs folder if it's configured
 */
async function validateSpecsFolder(): Promise<string> {
  if (!SPECS_FOLDER) {
    throw new Error('SPECS_FOLDER not configured');
  }

  try {
    // Check if the folder exists and is accessible
    const stats = await fs.stat(SPECS_FOLDER);
    
    if (!stats.isDirectory()) {
      console.error(`❌ Error: OPENAPI_SPECS_FOLDER is not a directory: ${SPECS_FOLDER}`);
      console.error('');
      console.error('Please provide a path to a directory containing your OpenAPI JSON files.');
      process.exit(1);
    }

    // Try to read the directory to check permissions
    await fs.access(SPECS_FOLDER, fs.constants.R_OK);
    
    return SPECS_FOLDER;
  } catch (error: any) {
    if (error.code === 'ENOENT') {
      console.error(`❌ Error: OPENAPI_SPECS_FOLDER does not exist: ${SPECS_FOLDER}`);
      console.error('');
      console.error('Please create the directory or provide a path to an existing directory.');
    } else if (error.code === 'EACCES') {
      console.error(`❌ Error: No read permission for OPENAPI_SPECS_FOLDER: ${SPECS_FOLDER}`);
      console.error('');
      console.error('Please check the folder permissions.');
    } else {
      console.error(`❌ Error accessing OPENAPI_SPECS_FOLDER: ${error.message}`);
    }
    process.exit(1);
  }
}

export interface OpenAPIInfo {
  title?: string;
  version?: string;
  description?: string;
}

export interface OpenAPISpec {
  filename: string;
  spec: Record<string, any>;
  info?: OpenAPIInfo;
  paths?: Record<string, any>;
  components?: Record<string, any>;
  source?: {
    type: 'local' | 'remote';
    url?: string;
    apiInfo?: any;
  };
}

export interface ApiSummary {
  filename: string;
  title: string;
  version: string;
  description: string;
  endpointCount: number;
}

export interface SearchResult {
  filename: string;
  api_title?: string;
  path: string;
  method: string;
  summary?: string;
  description?: string;
  operationId?: string;
}

export interface ApiStats {
  totalApis: number;
  totalEndpoints: number;
  methodCounts: Record<string, number>;
  commonPaths: Record<string, number>;
  versions: Record<string, number>;
  apis: Array<{
    filename: string;
    title?: string;
    version?: string;
    endpointCount: number;
    methods: string[];
  }>;
}

export interface Inconsistency {
  type: string;
  message: string;
  details: Record<string, any>;
}

export interface SchemaComparison {
  filename: string;
  api?: string;
  schemaName: string;
  schema: Record<string, any>;
}

export interface LoadSource {
  type: 'discovery' | 'urls' | 'folder';
  url?: string;
  urls?: string[];
  folder?: string;
  count: number;
  metadata?: any;
}

export interface ApiDiscovery {
  name?: string;
  description?: string;
  url?: string;
  apis: Array<{
    name: string;
    baseURL?: string;
    version?: string;
    description?: string;
    properties?: Array<{
      type: string;
      url: string;
    }>;
    spec_url?: string; // Custom format support
    docs_url?: string; // Custom format support
    status?: string;   // Custom format support
    tags?: string[];   // Custom format support
  }>;
}

/**
 * Main analyzer class for OpenAPI specifications
 */
export class OpenAPIAnalyzer {
  private specs: OpenAPISpec[] = [];
  private loadedSources: LoadSource[] = [];
  private discoveryUrl?: string;
  private specUrls: string[] = [];
  private specsFolder?: string;

  constructor(options?: {
    discoveryUrl?: string;
    specUrls?: string[];
    specsFolder?: string;
  }) {
    // Use constructor options for testing, or fall back to environment variables
    this.discoveryUrl = options?.discoveryUrl || DISCOVERY_URL;
    this.specUrls = options?.specUrls || SPEC_URLS;
    this.specsFolder = options?.specsFolder || SPECS_FOLDER;
  }

  /**
   * Load specs from all configured sources: Discovery URL + Individual URLs + Local folder
   */
  async loadSpecs(): Promise<void> {
    this.specs = [];
    this.loadedSources = [];
    let totalLoaded = 0;

    // Source 1: Discovery URL (apis.json or custom registry)
    if (this.discoveryUrl) {
      const beforeCount = this.specs.length;
      await this.loadFromDiscoveryUrl();
      const discoveryCount = this.specs.length - beforeCount;
      if (discoveryCount > 0) {
        console.error(`✅ Loaded ${discoveryCount} specs from discovery URL`);
        totalLoaded += discoveryCount;
      }
    }

    // Source 2: Individual URLs
    if (this.specUrls.length > 0) {
      const beforeCount = this.specs.length;
      await this.loadFromUrls();
      const urlsCount = this.specs.length - beforeCount;
      if (urlsCount > 0) {
        console.error(`✅ Loaded ${urlsCount} specs from individual URLs`);
        totalLoaded += urlsCount;
      }
    }

    // Source 3: Local folder
    if (this.specsFolder) {
      const beforeCount = this.specs.length;
      await this.loadFromLocalFolder();
      const localCount = this.specs.length - beforeCount;
      if (localCount > 0) {
        console.error(`✅ Loaded ${localCount} specs from local folder`);
        totalLoaded += localCount;
      }
    }

    if (totalLoaded > 0) {
      console.error(`🎉 Total loaded: ${totalLoaded} OpenAPI specifications from ${this.loadedSources.length} sources`);
    } else {
      console.error('⚠️  Warning: No OpenAPI specifications were loaded from any source');
    }
  }

  /**
   * Load specs from discovery URL (apis.json format or custom)
   */
  private async loadFromDiscoveryUrl(): Promise<void> {
    try {
      console.error(`📡 Fetching API registry from ${this.discoveryUrl}`);
      
      const response = await fetch(this.discoveryUrl!);
      if (!response.ok) {
        throw new Error(`HTTP ${response.status}: ${response.statusText}`);
      }

      const registry: ApiDiscovery = await response.json();
      
      if (!registry.apis || !Array.isArray(registry.apis)) {
        throw new Error('Invalid registry format: missing apis array');
      }

      console.error(`📋 Found ${registry.apis.length} APIs in registry`);
      
      // Load each spec from the registry
      for (const apiInfo of registry.apis) {
        await this.loadSingleRemoteSpec(apiInfo);
      }

      this.loadedSources.push({
        type: 'discovery',
        url: this.discoveryUrl!,
        count: this.specs.length,
        metadata: {
          name: registry.name,
          description: registry.description,
          total_apis: registry.apis.length
        }
      });

    } catch (error: any) {
      console.error(`⚠️  Warning: Failed to load from discovery URL: ${error.message}`);
      console.error(`    Falling back to individual URLs or local folder`);
    }
  }

  /**
   * Load specs from individual URLs
   */
  private async loadFromUrls(): Promise<void> {
    console.error(`📡 Loading from ${this.specUrls.length} individual URLs`);
    
    for (const url of this.specUrls) {
      await this.loadSingleRemoteSpec({ name: url.split('/').pop() || 'remote-spec', spec_url: url });
    }

    this.loadedSources.push({
      type: 'urls',
      urls: this.specUrls,
      count: this.specs.length
    });
  }

  /**
   * Load a single remote OpenAPI spec
   */
  private async loadSingleRemoteSpec(apiInfo: ApiDiscovery['apis'][0]): Promise<void> {
    try {
      // Determine spec URL - support both apis.json format and custom format
      let specUrl: string | undefined;
      
      if (apiInfo.spec_url) {
        // Custom format
        specUrl = apiInfo.spec_url;
      } else if (apiInfo.properties) {
        // apis.json format - look for Swagger/OpenAPI property
        const openApiProperty = apiInfo.properties.find(p => 
          p.type.toLowerCase() === 'swagger' || 
          p.type.toLowerCase() === 'openapi'
        );
        specUrl = openApiProperty?.url;
      }

      if (!specUrl) {
        console.error(`⚠️  Skipping ${apiInfo.name}: No OpenAPI spec URL found`);
        return;
      }

      const response = await fetch(specUrl);
      if (!response.ok) {
        throw new Error(`HTTP ${response.status}: ${response.statusText}`);
      }

      // Use SwaggerParser.parse with URL directly to let it handle the fetching and parsing
      const spec = await SwaggerParser.parse(specUrl) as Record<string, any>;
      
      this.specs.push({
        filename: apiInfo.name,
        spec,
        info: spec.info,
        paths: spec.paths,
        components: spec.components,
        source: {
          type: 'remote',
          url: specUrl,
          apiInfo
        }
      });

      const title = spec.info?.title || apiInfo.name;
      const version = spec.info?.version || apiInfo.version || 'unknown';
      console.error(`  ✓ Loaded ${apiInfo.name} (${title} v${version})`);

    } catch (error: any) {
      console.error(`⚠️  Skipping ${apiInfo.name}: ${error.message}`);
    }
  }

  /**
   * Load specs from local folder (existing implementation)
   */
  private async loadFromLocalFolder(): Promise<void> {
    try {
      const validatedFolder = await this.validateLocalFolder();
      console.error(`📁 Loading from local folder: ${validatedFolder}`);
      
      const files = await fs.readdir(validatedFolder);
      const specFiles = files.filter(file => 
        file.endsWith('.json') || 
        file.endsWith('.yaml') || 
        file.endsWith('.yml')
      );
      
      if (specFiles.length === 0) {
        console.error(`⚠️  Warning: No OpenAPI specification files found in ${validatedFolder}`);
        return;
      }

      console.error(`📁 Found ${specFiles.length} OpenAPI specification files`);
      
      for (const file of specFiles) {
        await this.loadSingleLocalSpec(file, validatedFolder);
      }

      this.loadedSources.push({
        type: 'folder',
        folder: validatedFolder,
        count: this.specs.length
      });
      
    } catch (error: any) {
      console.error(`⚠️  Warning: Failed to load from local folder: ${error.message}`);
    }
  }

  /**
   * Validate local specs folder
   */
  private async validateLocalFolder(): Promise<string> {
    if (!this.specsFolder) {
      throw new Error('SPECS_FOLDER not configured');
    }

    try {
      const stats = await fs.stat(this.specsFolder);
      
      if (!stats.isDirectory()) {
        throw new Error(`OPENAPI_SPECS_FOLDER is not a directory: ${this.specsFolder}`);
      }

      await fs.access(this.specsFolder, fs.constants.R_OK);
      
      return this.specsFolder;
    } catch (error: any) {
      if (error.code === 'ENOENT') {
        throw new Error(`OPENAPI_SPECS_FOLDER does not exist: ${this.specsFolder}`);
      } else if (error.code === 'EACCES') {
        throw new Error(`No read permission for OPENAPI_SPECS_FOLDER: ${this.specsFolder}`);
      } else {
        throw error;
      }
    }
  }

  /**
   * Load a single OpenAPI specification file from local folder
   */
  private async loadSingleLocalSpec(filename: string, specsFolder: string): Promise<void> {
    try {
      const filePath = path.join(specsFolder, filename);
      
      let spec: Record<string, any>;
      try {
        // Use Swagger parser to handle JSON/YAML parsing and $ref resolution
        spec = await SwaggerParser.parse(filePath) as Record<string, any>;
      } catch (parseError) {
        const fileExt = path.extname(filename);
        console.error(`⚠️  Skipping ${filename}: Invalid ${fileExt.substring(1).toUpperCase()} format or malformed OpenAPI spec`);
        return;
      }
      
      // Swagger parser already validates that it's a valid OpenAPI spec
      // Additional validation is now handled by the parser
      
      // Additional validation for common issues
      if (!spec.info) {
        console.error(`⚠️  Warning: ${filename} missing 'info' section, but will be loaded`);
      }
      
      if (!spec.paths || Object.keys(spec.paths).length === 0) {
        console.error(`⚠️  Warning: ${filename} has no paths defined`);
      }
      
      this.specs.push({
        filename,
        spec,
        info: spec.info,
        paths: spec.paths,
        components: spec.components,
        source: {
          type: 'local'
        }
      });
      
      console.error(`  ✓ Loaded ${filename} (${spec.info?.title || 'Untitled'} v${spec.info?.version || 'unknown'})`);
    } catch (error: any) {
      console.error(`❌ Error loading ${filename}: ${error.message}`);
    }
  }

  /**
   * Get a summary of all loaded OpenAPI specifications
   */
  listAllSpecs(): ApiSummary[] {
    return this.specs.map(spec => ({
      filename: spec.filename,
      title: spec.info?.title || 'No title',
      version: spec.info?.version || 'No version',
      description: spec.info?.description || 'No description',
      endpointCount: spec.paths ? Object.keys(spec.paths).length : 0
    }));
  }

  /**
   * Get information about loaded sources
   */
  getLoadedSources(): LoadSource[] {
    return this.loadedSources;
  }

  /**
   * Get the full OpenAPI specification by filename
   */
  getSpecByFilename(filename: string): Record<string, any> | null {
    const spec = this.specs.find(s => s.filename === filename);
    return spec ? spec.spec : null;
  }

  /**
   * Search for endpoints across all APIs by keyword
   */
  searchEndpoints(query: string): SearchResult[] {
    const results: SearchResult[] = [];
    const lowerQuery = query.toLowerCase();

    for (const spec of this.specs) {
      if (!spec.paths) continue;

      for (const [path, pathItem] of Object.entries(spec.paths)) {
        for (const [method, operation] of Object.entries(pathItem as Record<string, any>)) {
          if (typeof operation !== 'object' || operation === null) continue;

          const operationObj = operation as Record<string, any>;
          const searchableText = [
            path,
            method,
            operationObj.summary || '',
            operationObj.description || '',
            operationObj.operationId || ''
          ].join(' ').toLowerCase();
          
          if (searchableText.includes(lowerQuery)) {
            results.push({
              filename: spec.filename,
              api_title: spec.info?.title,
              path,
              method: method.toUpperCase(),
              summary: operationObj.summary,
              description: operationObj.description,
              operationId: operationObj.operationId
            });
          }
        }
      }
    }

    return results;
  }

  /**
   * Generate comprehensive statistics about all loaded APIs
   */
  getApiStats(): ApiStats {
    const stats: ApiStats = {
      totalApis: this.specs.length,
      totalEndpoints: 0,
      methodCounts: {},
      commonPaths: {},
      versions: {},
      apis: []
    };

    const httpMethods = ['get', 'post', 'put', 'delete', 'patch', 'options', 'head'];
    
    for (const spec of this.specs) {
      let endpointCount = 0;
      const apiMethods = new Set<string>();

      if (spec.paths) {
        for (const [path, pathItem] of Object.entries(spec.paths)) {
          for (const method of Object.keys(pathItem as Record<string, any>)) {
            if (httpMethods.includes(method.toLowerCase())) {
              endpointCount++;
              const upperMethod = method.toUpperCase();
              apiMethods.add(upperMethod);
              stats.methodCounts[upperMethod] = (stats.methodCounts[upperMethod] || 0) + 1;
            }
          }
          
          // Track common path patterns
          const pathPattern = path.replace(/\{[^}]+\}/g, '{id}');
          stats.commonPaths[pathPattern] = (stats.commonPaths[pathPattern] || 0) + 1;
        }
      }

      stats.totalEndpoints += endpointCount;
      
      const version = spec.info?.version || 'unknown';
      stats.versions[version] = (stats.versions[version] || 0) + 1;

      stats.apis.push({
        filename: spec.filename,
        title: spec.info?.title,
        version: spec.info?.version,
        endpointCount,
        methods: Array.from(apiMethods).sort()
      });
    }

    return stats;
  }

  /**
   * Find inconsistencies in authentication schemes and naming conventions across APIs
   */
  findInconsistencies(): Inconsistency[] {
    const inconsistencies: Inconsistency[] = [];
    
    // Check authentication schemes
    const authSchemes = new Map<string, string[]>();
    
    for (const spec of this.specs) {
      if (spec.spec.components?.securitySchemes) {
        for (const [name, scheme] of Object.entries(spec.spec.components.securitySchemes as Record<string, any>)) {
          const schemeObj = scheme as Record<string, any>;
          const type = schemeObj.type;
          
          if (type) {
            if (!authSchemes.has(type)) {
              authSchemes.set(type, []);
            }
            authSchemes.get(type)!.push(`${spec.filename}: ${name}`);
          }
        }
      }
    }

    // Report auth inconsistencies
    if (authSchemes.size > 1) {
      inconsistencies.push({
        type: 'authentication',
        message: 'Multiple authentication schemes found across APIs',
        details: Object.fromEntries(authSchemes)
      });
    }

    return inconsistencies;
  }

  /**
   * Compare schemas with the same name across different APIs
   */
  compareSchemas(schema1Name: string, schema2Name: string): SchemaComparison[] {
    const schemas: SchemaComparison[] = [];
    const schemaNames = schema2Name ? [schema1Name, schema2Name] : [schema1Name];
    
    for (const spec of this.specs) {
      if (spec.components?.schemas) {
        for (const schemaName of schemaNames) {
          if (spec.components.schemas[schemaName]) {
            schemas.push({
              filename: spec.filename,
              api: spec.info?.title,
              schemaName,
              schema: spec.components.schemas[schemaName]
            });
          }
        }
      }
    }

    return schemas;
  }
}

// Initialize the analyzer
const analyzer = new OpenAPIAnalyzer();

// Create the MCP server
const server = new Server(
  {
    name: 'openapi-analyzer',
    version: '1.0.0',
  },
  {
    capabilities: {
      tools: {},
    },
  }
);

/**
 * Define all available tools for the MCP server
 */
const tools: Tool[] = [
  {
    name: 'load_specs',
    description: 'Load all OpenAPI specifications from the configured folder',
    inputSchema: {
      type: 'object',
      properties: {},
    },
  },
  {
    name: 'list_apis',
    description: 'List all loaded API specifications with basic info',
    inputSchema: {
      type: 'object',
      properties: {},
    },
  },
  {
    name: 'get_api_spec',
    description: 'Get the full OpenAPI spec for a specific file',
    inputSchema: {
      type: 'object',
      properties: {
        filename: {
          type: 'string',
          description: 'The filename of the OpenAPI spec',
        },
      },
      required: ['filename'],
    },
  },
  {
    name: 'search_endpoints',
    description: 'Search for endpoints across all APIs by keyword',
    inputSchema: {
      type: 'object',
      properties: {
        query: {
          type: 'string',
          description: 'Search term to find in paths, methods, summaries, or descriptions',
        },
      },
      required: ['query'],
    },
  },
  {
    name: 'get_api_stats',
    description: 'Get comprehensive statistics about all loaded APIs',
    inputSchema: {
      type: 'object',
      properties: {},
    },
  },
  {
    name: 'find_inconsistencies',
    description: 'Find naming conventions and other inconsistencies across APIs',
    inputSchema: {
      type: 'object',
      properties: {},
    },
  },
  {
    name: 'compare_schemas',
    description: 'Compare schemas with the same name across different APIs',
    inputSchema: {
      type: 'object',
      properties: {
        schema1: {
          type: 'string',
          description: 'First schema name to compare',
        },
        schema2: {
          type: 'string',
          description: 'Second schema name to compare (optional)',
        },
      },
      required: ['schema1'],
    },
  },
  {
    name: 'get_load_sources',
    description: 'Get information about where OpenAPI specs were loaded from (discovery URL, individual URLs, or local folder)',
    inputSchema: {
      type: 'object',
      properties: {},
    },
  },
];

// List available tools
server.setRequestHandler(ListToolsRequestSchema, async () => {
  return { tools };
});

// Handle tool calls
server.setRequestHandler(CallToolRequestSchema, async (request) => {
  const { name, arguments: args } = request.params;

  if (!args) {
    return {
      content: [
        {
          type: 'text',
          text: 'Error: No arguments provided',
        },
      ],
    };
  }

  try {
    switch (name) {
      case 'load_specs':
        await analyzer.loadSpecs();
        return {
          content: [
            {
              type: 'text',
              text: `Successfully loaded ${analyzer['specs'].length} OpenAPI specifications`,
            },
          ],
        };

      case 'list_apis':
        const apiList = analyzer.listAllSpecs();
        return {
          content: [
            {
              type: 'text',
              text: JSON.stringify(apiList, null, 2),
            },
          ],
        };

      case 'get_api_spec':
        const filename = args.filename as string;
        if (!filename) {
          return {
            content: [
              {
                type: 'text',
                text: 'Error: filename parameter is required',
              },
            ],
          };
        }
        const spec = analyzer.getSpecByFilename(filename);
        if (!spec) {
          return {
            content: [
              {
                type: 'text',
                text: `API spec not found: ${filename}`,
              },
            ],
          };
        }
        return {
          content: [
            {
              type: 'text',
              text: JSON.stringify(spec, null, 2),
            },
          ],
        };

      case 'search_endpoints':
        const query = args.query as string;
        if (!query) {
          return {
            content: [
              {
                type: 'text',
                text: 'Error: query parameter is required',
              },
            ],
          };
        }
        const searchResults = analyzer.searchEndpoints(query);
        return {
          content: [
            {
              type: 'text',
              text: JSON.stringify(searchResults, null, 2),
            },
          ],
        };

      case 'get_api_stats':
        const stats = analyzer.getApiStats();
        return {
          content: [
            {
              type: 'text',
              text: JSON.stringify(stats, null, 2),
            },
          ],
        };

      case 'find_inconsistencies':
        const inconsistencies = analyzer.findInconsistencies();
        return {
          content: [
            {
              type: 'text',
              text: JSON.stringify(inconsistencies, null, 2),
            },
          ],
        };

      case 'compare_schemas':
        const schema1 = args.schema1 as string;
        const schema2 = (args.schema2 as string) || schema1;
        if (!schema1) {
          return {
            content: [
              {
                type: 'text',
                text: 'Error: schema1 parameter is required',
              },
            ],
          };
        }
        const comparison = analyzer.compareSchemas(schema1, schema2);
        return {
          content: [
            {
              type: 'text',
              text: JSON.stringify(comparison, null, 2),
            },
          ],
        };

      case 'get_load_sources':
        const sources = analyzer.getLoadedSources();
        return {
          content: [
            {
              type: 'text',
              text: JSON.stringify(sources, null, 2),
            },
          ],
        };

      default:
        throw new Error(`Unknown tool: ${name}`);
    }
  } catch (error) {
    return {
      content: [
        {
          type: 'text',
          text: `Error: ${error}`,
        },
      ],
    };
  }
});

// Start the server
async function main() {
  try {
    // Validate configuration before starting the server
    await validateConfiguration();
    
    const transport = new StdioServerTransport();
    await server.connect(transport);
    console.error('🚀 OpenAPI Analyzer MCP Server running...');
    console.error('📖 Ready to analyze OpenAPI specifications!');
  } catch (error: any) {
    console.error(`❌ Failed to start server: ${error.message}`);
    process.exit(1);
  }
}

// Only run the server if this file is being executed directly (not imported)
if (import.meta.url === `file://${process.argv[1]}` || 
    process.argv[1]?.includes('openapi-analyzer-mcp')) {
  main().catch((error: any) => {
    console.error(`❌ Unexpected error: ${error.message}`);
    process.exit(1);
  });
}
```