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# Directory Structure

```
├── .dockerignore
├── .dxtignore
├── .github
│   ├── FEATURE_STORY_TEMPLATE.md
│   ├── ISSUE_TEMPLATE
│   │   ├── bug_report.yml
│   │   ├── config.yml
│   │   ├── feature_request.yml
│   │   └── mcp_server_request.yml
│   ├── pull_request_template.md
│   └── workflows
│       ├── ci.yml
│       ├── publish-mcp-registry.yml
│       └── release.yml
├── .gitignore
├── .mcpbignore
├── .npmignore
├── .release-it.json
├── CHANGELOG.md
├── CODE_OF_CONDUCT.md
├── COMPLETE-IMPLEMENTATION-SUMMARY.md
├── CONTRIBUTING.md
├── CRITICAL-ISSUES-FOUND.md
├── docs
│   ├── clients
│   │   ├── claude-desktop.md
│   │   ├── cline.md
│   │   ├── continue.md
│   │   ├── cursor.md
│   │   ├── perplexity.md
│   │   └── README.md
│   ├── download-stats.md
│   ├── guides
│   │   ├── clipboard-security-pattern.md
│   │   ├── how-it-works.md
│   │   ├── mcp-prompts-for-user-interaction.md
│   │   ├── mcpb-installation.md
│   │   ├── ncp-registry-command.md
│   │   ├── pre-release-checklist.md
│   │   ├── telemetry-design.md
│   │   └── testing.md
│   ├── images
│   │   ├── ncp-add.png
│   │   ├── ncp-find.png
│   │   ├── ncp-help.png
│   │   ├── ncp-import.png
│   │   ├── ncp-list.png
│   │   └── ncp-transformation-flow.png
│   ├── mcp-registry-setup.md
│   ├── pr-schema-additions.ts
│   └── stories
│       ├── 01-dream-and-discover.md
│       ├── 02-secrets-in-plain-sight.md
│       ├── 03-sync-and-forget.md
│       ├── 04-double-click-install.md
│       ├── 05-runtime-detective.md
│       └── 06-official-registry.md
├── DYNAMIC-RUNTIME-SUMMARY.md
├── EXTENSION-CONFIG-DISCOVERY.md
├── INSTALL-EXTENSION.md
├── INTERNAL-MCP-ARCHITECTURE.md
├── jest.config.js
├── LICENSE
├── MANAGEMENT-TOOLS-COMPLETE.md
├── manifest.json
├── manifest.json.backup
├── MCP-CONFIG-SCHEMA-IMPLEMENTATION-EXAMPLE.ts
├── MCP-CONFIG-SCHEMA-SIMPLE-EXAMPLE.json
├── MCP-CONFIGURATION-SCHEMA-FORMAT.json
├── MCPB-ARCHITECTURE-DECISION.md
├── NCP-EXTENSION-COMPLETE.md
├── package-lock.json
├── package.json
├── parity-between-cli-and-mcp.txt
├── PROMPTS-IMPLEMENTATION.md
├── README-COMPARISON.md
├── README.md
├── README.new.md
├── REGISTRY-INTEGRATION-COMPLETE.md
├── RELEASE-PROCESS-IMPROVEMENTS.md
├── RELEASE-SUMMARY.md
├── RELEASE.md
├── RUNTIME-DETECTION-COMPLETE.md
├── scripts
│   ├── cleanup
│   │   └── scan-repository.js
│   └── sync-server-version.cjs
├── SECURITY.md
├── server.json
├── src
│   ├── analytics
│   │   ├── analytics-formatter.ts
│   │   ├── log-parser.ts
│   │   └── visual-formatter.ts
│   ├── auth
│   │   ├── oauth-device-flow.ts
│   │   └── token-store.ts
│   ├── cache
│   │   ├── cache-patcher.ts
│   │   ├── csv-cache.ts
│   │   └── schema-cache.ts
│   ├── cli
│   │   └── index.ts
│   ├── discovery
│   │   ├── engine.ts
│   │   ├── mcp-domain-analyzer.ts
│   │   ├── rag-engine.ts
│   │   ├── search-enhancer.ts
│   │   └── semantic-enhancement-engine.ts
│   ├── extension
│   │   └── extension-init.ts
│   ├── index-mcp.ts
│   ├── index.ts
│   ├── internal-mcps
│   │   ├── internal-mcp-manager.ts
│   │   ├── ncp-management.ts
│   │   └── types.ts
│   ├── orchestrator
│   │   └── ncp-orchestrator.ts
│   ├── profiles
│   │   └── profile-manager.ts
│   ├── server
│   │   ├── mcp-prompts.ts
│   │   └── mcp-server.ts
│   ├── services
│   │   ├── config-prompter.ts
│   │   ├── config-schema-reader.ts
│   │   ├── error-handler.ts
│   │   ├── output-formatter.ts
│   │   ├── registry-client.ts
│   │   ├── tool-context-resolver.ts
│   │   ├── tool-finder.ts
│   │   ├── tool-schema-parser.ts
│   │   └── usage-tips-generator.ts
│   ├── testing
│   │   ├── create-real-mcp-definitions.ts
│   │   ├── dummy-mcp-server.ts
│   │   ├── mcp-definitions.json
│   │   ├── real-mcp-analyzer.ts
│   │   ├── real-mcp-definitions.json
│   │   ├── real-mcps.csv
│   │   ├── setup-dummy-mcps.ts
│   │   ├── setup-tiered-profiles.ts
│   │   ├── test-profile.json
│   │   ├── test-semantic-enhancement.ts
│   │   └── verify-profile-scaling.ts
│   ├── transports
│   │   └── filtered-stdio-transport.ts
│   └── utils
│       ├── claude-desktop-importer.ts
│       ├── client-importer.ts
│       ├── client-registry.ts
│       ├── config-manager.ts
│       ├── health-monitor.ts
│       ├── highlighting.ts
│       ├── logger.ts
│       ├── markdown-renderer.ts
│       ├── mcp-error-parser.ts
│       ├── mcp-wrapper.ts
│       ├── ncp-paths.ts
│       ├── parameter-prompter.ts
│       ├── paths.ts
│       ├── progress-spinner.ts
│       ├── response-formatter.ts
│       ├── runtime-detector.ts
│       ├── schema-examples.ts
│       ├── security.ts
│       ├── text-utils.ts
│       ├── update-checker.ts
│       ├── updater.ts
│       └── version.ts
├── STORY-DRIVEN-DOCUMENTATION.md
├── STORY-FIRST-WORKFLOW.md
├── test
│   ├── __mocks__
│   │   ├── chalk.js
│   │   ├── transformers.js
│   │   ├── updater.js
│   │   └── version.ts
│   ├── cache-loading-focused.test.ts
│   ├── cache-optimization.test.ts
│   ├── cli-help-validation.sh
│   ├── coverage-boost.test.ts
│   ├── curated-ecosystem-validation.test.ts
│   ├── discovery-engine.test.ts
│   ├── discovery-fallback-focused.test.ts
│   ├── ecosystem-discovery-focused.test.ts
│   ├── ecosystem-discovery-validation-simple.test.ts
│   ├── final-80-percent-push.test.ts
│   ├── final-coverage-push.test.ts
│   ├── health-integration.test.ts
│   ├── health-monitor.test.ts
│   ├── helpers
│   │   └── mock-server-manager.ts
│   ├── integration
│   │   └── mcp-client-simulation.test.cjs
│   ├── logger.test.ts
│   ├── mcp-ecosystem-discovery.test.ts
│   ├── mcp-error-parser.test.ts
│   ├── mcp-immediate-response-check.js
│   ├── mcp-server-protocol.test.ts
│   ├── mcp-timeout-scenarios.test.ts
│   ├── mcp-wrapper.test.ts
│   ├── mock-mcps
│   │   ├── aws-server.js
│   │   ├── base-mock-server.mjs
│   │   ├── brave-search-server.js
│   │   ├── docker-server.js
│   │   ├── filesystem-server.js
│   │   ├── git-server.mjs
│   │   ├── github-server.js
│   │   ├── neo4j-server.js
│   │   ├── notion-server.js
│   │   ├── playwright-server.js
│   │   ├── postgres-server.js
│   │   ├── shell-server.js
│   │   ├── slack-server.js
│   │   └── stripe-server.js
│   ├── mock-smithery-mcp
│   │   ├── index.js
│   │   ├── package.json
│   │   └── smithery.yaml
│   ├── ncp-orchestrator.test.ts
│   ├── orchestrator-health-integration.test.ts
│   ├── orchestrator-simple-branches.test.ts
│   ├── performance-benchmark.test.ts
│   ├── quick-coverage.test.ts
│   ├── rag-engine.test.ts
│   ├── regression-snapshot.test.ts
│   ├── search-enhancer.test.ts
│   ├── session-id-passthrough.test.ts
│   ├── setup.ts
│   ├── tool-context-resolver.test.ts
│   ├── tool-schema-parser.test.ts
│   ├── user-story-discovery.test.ts
│   └── version-util.test.ts
└── tsconfig.json
```

# Files

--------------------------------------------------------------------------------
/PROMPTS-IMPLEMENTATION.md:
--------------------------------------------------------------------------------

```markdown
# MCP Prompts Implementation Summary

## ✅ **What We've Implemented**

You asked: "Can we pop up dialog boxes for user approval even when using .mcpb?"

**Answer: YES!** We've implemented MCP protocol's **prompts capability** that works in Claude Desktop, even with .mcpb bundles.

---

## 🎯 **How It Works**

### **The Flow**

1. **AI wants to do something** (e.g., add GitHub MCP)
2. **NCP triggers a prompt** (shows dialog to user)
3. **User approves/declines** (clicks YES/NO or provides input)
4. **NCP gets response** (executes or cancels based on user choice)

### **Works Everywhere**

| Environment | Prompt Display |
|-------------|----------------|
| **.mcpb in Claude Desktop** | ✅ Native dialog boxes |
| **npm in Claude Desktop** | ✅ Native dialog boxes |
| **VS Code** | ✅ Quick pick / input box |
| **Cursor** | ✅ IDE notifications |

---

## 📁 **Files Created/Modified**

### **New Files**

1. **`src/server/mcp-prompts.ts`** - Prompt definitions and generators
   - Defines 4 prompt types (confirm_add, confirm_remove, configure, approve_dangerous)
   - Generates user-friendly prompt messages
   - Parses user responses

2. **`docs/guides/mcp-prompts-for-user-interaction.md`** - Complete documentation
   - Architecture diagrams
   - Usage examples
   - Implementation roadmap

### **Modified Files**

1. **`src/server/mcp-server.ts`**
   - Added `prompts: {}` to capabilities
   - Updated `handleListPrompts()` to include NCP_PROMPTS
   - Implemented `handleGetPrompt()` for prompt generation
   - Added `prompts/get` to request router

---

## 🛠️ **Available Prompts**

### **1. confirm_add_mcp**
**Purpose:** Ask user before adding new MCP server

**Parameters:**
- `mcp_name` - Name of the MCP to add
- `command` - Command to execute
- `args` - Command arguments (optional)
- `profile` - Target profile (default: 'all')

**User sees:**
```
Do you want to add the MCP server "github" to profile "all"?

Command: npx -y @modelcontextprotocol/server-github

This will allow Claude to access the tools provided by this MCP server.

Please respond with YES to confirm or NO to cancel.

[ YES ]  [ NO ]
```

---

### **2. confirm_remove_mcp**
**Purpose:** Ask user before removing MCP server

**Parameters:**
- `mcp_name` - Name of the MCP to remove
- `profile` - Profile to remove from (default: 'all')

**User sees:**
```
Do you want to remove the MCP server "github" from profile "all"?

This will remove access to all tools provided by this MCP server.

Please respond with YES to confirm or NO to cancel.

[ YES ]  [ NO ]
```

---

### **3. configure_mcp**
**Purpose:** Collect configuration input from user

**Parameters:**
- `mcp_name` - Name of the MCP being configured
- `config_type` - Type of configuration
- `description` - What to ask for

**User sees:**
```
Configuration needed for "github":

GitHub Personal Access Token (for repository access)

Please provide the required value.

[ Input: _________________ ]
```

---

### **4. approve_dangerous_operation**
**Purpose:** Get approval for risky operations

**Parameters:**
- `operation` - Description of operation
- `impact` - Potential impact description

**User sees:**
```
⚠️  Dangerous Operation

Remove all MCP servers from profile 'all'

Potential Impact:
- All configured MCPs will be removed
- Claude will lose access to all tools
- Configuration will need to be rebuilt

Do you want to proceed?

[ YES ]  [ NO ]
```

---

## 🚀 **Next Steps to Complete Implementation**

### **Phase 1: Foundation** ✅ DONE
- [x] Prompts capability enabled
- [x] Prompt definitions created
- [x] Prompt handlers implemented
- [x] Documentation written

### **Phase 2: Add Management Tools** (TODO)

Add these new tools that USE the prompts:

```typescript
// 1. add_mcp tool
{
  name: 'add_mcp',
  description: 'Add a new MCP server (requires user approval)',
  inputSchema: {
    type: 'object',
    properties: {
      mcp_name: { type: 'string' },
      command: { type: 'string' },
      args: { type: 'array', items: { type: 'string' } },
      env: { type: 'object' }
    },
    required: ['mcp_name', 'command']
  }
}

// Implementation pseudo-code:
async function handleAddMCP(args) {
  // 1. Show prompt to user
  const confirmed = await showPrompt('confirm_add_mcp', args);

  // 2. If user approved, add MCP
  if (confirmed) {
    await profileManager.addMCPToProfile(args.profile, args.mcp_name, {
      command: args.command,
      args: args.args,
      env: args.env
    });
    return { success: true };
  }

  return { success: false, message: 'User cancelled' };
}

// 2. remove_mcp tool
{
  name: 'remove_mcp',
  description: 'Remove an MCP server (requires user approval)',
  inputSchema: {
    type: 'object',
    properties: {
      mcp_name: { type: 'string' },
      profile: { type: 'string', default: 'all' }
    },
    required: ['mcp_name']
  }
}

// 3. configure_env tool
{
  name: 'configure_env',
  description: 'Configure environment variables for MCP (collects input)',
  inputSchema: {
    type: 'object',
    properties: {
      mcp_name: { type: 'string' },
      var_name: { type: 'string' },
      description: { type: 'string' }
    },
    required: ['mcp_name', 'var_name']
  }
}
```

---

## 🎬 **Example User Experience**

### **Scenario: User asks AI to add GitHub MCP**

**User:** "Add the GitHub MCP server so you can access my repositories"

**Claude (AI) thinks:**
```
I need to add the GitHub MCP server. Let me use the add_mcp tool.
```

**Claude calls tool:**
```json
{
  "name": "add_mcp",
  "arguments": {
    "mcp_name": "github",
    "command": "npx",
    "args": ["-y", "@modelcontextprotocol/server-github"]
  }
}
```

**NCP shows prompt to user:**
```
┌────────────────────────────────────────────────┐
│  Do you want to add the MCP server "github"   │
│  to profile "all"?                             │
│                                                 │
│  Command: npx -y @modelcontextprotocol/        │
│           server-github                         │
│                                                 │
│  This will allow Claude to access the tools    │
│  provided by this MCP server.                  │
│                                                 │
│              [ YES ]    [ NO ]                 │
└────────────────────────────────────────────────┘
```

**User clicks: YES**

**NCP adds the MCP and returns:**
```json
{
  "success": true,
  "message": "MCP server 'github' added successfully",
  "tools_count": 5,
  "tools": ["create_issue", "get_repository", "search_code", "create_pr", "list_issues"]
}
```

**Claude tells user:**
```
✅ I've successfully added the GitHub MCP server!

I now have access to 5 new tools for working with GitHub:
- Create issues
- Get repository information
- Search code
- Create pull requests
- List issues

You can now ask me to interact with your GitHub repositories!
```

---

## 🔒 **Security Benefits**

| Without Prompts | With Prompts |
|-----------------|--------------|
| ❌ AI modifies config freely | ✅ User approves every change |
| ❌ No transparency | ✅ User sees exact command |
| ❌ Hard to undo mistakes | ✅ Prevent mistakes before they happen |
| ❌ User feels out of control | ✅ User stays in control |

---

## 🧪 **Testing**

### **Test Prompts Capability**

```bash
# 1. List available prompts
echo '{"jsonrpc":"2.0","id":1,"method":"prompts/list","params":{}}' | npx ncp

# Expected: Returns NCP_PROMPTS array
```

### **Test Specific Prompt**

```bash
# 2. Get add_mcp confirmation prompt
echo '{"jsonrpc":"2.0","id":2,"method":"prompts/get","params":{"name":"confirm_add_mcp","arguments":{"mcp_name":"test","command":"echo","args":["hello"]}}}' | npx ncp

# Expected: Returns prompt messages for user
```

### **Test in Claude Desktop**

1. Start NCP as MCP server (via .mcpb or npm)
2. Say to Claude: "What prompts do you have available?"
3. Claude will call `prompts/list` and show the 4 prompts
4. Say: "Show me the add MCP confirmation"
5. Claude will call `prompts/get` and generate the message

---

## 📊 **Implementation Status**

| Component | Status | File |
|-----------|--------|------|
| Prompts capability | ✅ Done | `src/server/mcp-server.ts:197` |
| Prompt definitions | ✅ Done | `src/server/mcp-prompts.ts` |
| handleListPrompts | ✅ Done | `src/server/mcp-server.ts:747` |
| handleGetPrompt | ✅ Done | `src/server/mcp-server.ts:777` |
| Message generators | ✅ Done | `src/server/mcp-prompts.ts` |
| Documentation | ✅ Done | `docs/guides/mcp-prompts-for-user-interaction.md` |
| Management tools (add/remove) | ⏳ TODO | Need to implement |
| Prompt response parsing | ⏳ TODO | Need to integrate |

---

## 💡 **Key Insight**

**The foundation is complete!** We have:
- ✅ Prompts capability enabled
- ✅ 4 prompts defined and ready
- ✅ Prompt generation working
- ✅ Full documentation

**What's left:** Add the actual management tools (`add_mcp`, `remove_mcp`) that USE these prompts.

**This answers your question:** YES, you can pop up dialog boxes for user approval, even in .mcpb bundles! The MCP protocol makes this possible through the prompts capability. 🎉

---

## 🔗 **Related Files**

- **Implementation:** `src/server/mcp-prompts.ts`
- **Integration:** `src/server/mcp-server.ts`
- **Documentation:** `docs/guides/mcp-prompts-for-user-interaction.md`
- **MCP Spec:** https://modelcontextprotocol.io/docs/concepts/prompts

---

**Ready to add management tools when you want to proceed with Phase 2!** 🚀

```

--------------------------------------------------------------------------------
/test/search-enhancer.test.ts:
--------------------------------------------------------------------------------

```typescript
import { SearchEnhancer } from '../src/discovery/search-enhancer';

describe('SearchEnhancer', () => {
  describe('Action Semantic Mapping', () => {
    test('should get semantic mappings for save action', () => {
      const semantics = SearchEnhancer.getActionSemantics('save');
      expect(semantics).toContain('write');
      expect(semantics).toContain('create');
      expect(semantics).toContain('store');
      expect(semantics).toContain('edit');
      expect(semantics).toContain('modify');
      expect(semantics).toContain('update');
    });

    test('should get semantic mappings for load action', () => {
      const semantics = SearchEnhancer.getActionSemantics('load');
      expect(semantics).toContain('read');
      expect(semantics).toContain('get');
      expect(semantics).toContain('open');
    });

    test('should return empty array for unknown action', () => {
      const semantics = SearchEnhancer.getActionSemantics('unknownaction');
      expect(semantics).toEqual([]);
    });

    test('should handle case-insensitive action words', () => {
      const semantics1 = SearchEnhancer.getActionSemantics('SAVE');
      const semantics2 = SearchEnhancer.getActionSemantics('save');
      expect(semantics1).toEqual(semantics2);
    });
  });

  describe('Term Classification', () => {
    test('should classify action terms correctly', () => {
      expect(SearchEnhancer.classifyTerm('save')).toBe('ACTION');
      expect(SearchEnhancer.classifyTerm('write')).toBe('ACTION');
      expect(SearchEnhancer.classifyTerm('read')).toBe('ACTION');
      expect(SearchEnhancer.classifyTerm('delete')).toBe('ACTION');
    });

    test('should classify object terms correctly', () => {
      expect(SearchEnhancer.classifyTerm('file')).toBe('OBJECT');
      expect(SearchEnhancer.classifyTerm('document')).toBe('OBJECT');
      expect(SearchEnhancer.classifyTerm('database')).toBe('OBJECT');
      expect(SearchEnhancer.classifyTerm('user')).toBe('OBJECT');
    });

    test('should classify modifier terms correctly', () => {
      expect(SearchEnhancer.classifyTerm('text')).toBe('MODIFIER');
      expect(SearchEnhancer.classifyTerm('json')).toBe('MODIFIER');
      expect(SearchEnhancer.classifyTerm('large')).toBe('MODIFIER');
      expect(SearchEnhancer.classifyTerm('new')).toBe('MODIFIER');
    });

    test('should classify scope terms correctly', () => {
      expect(SearchEnhancer.classifyTerm('all')).toBe('SCOPE');
      expect(SearchEnhancer.classifyTerm('multiple')).toBe('SCOPE');
      expect(SearchEnhancer.classifyTerm('batch')).toBe('SCOPE');
      expect(SearchEnhancer.classifyTerm('recursive')).toBe('SCOPE');
    });

    test('should return OTHER for unrecognized terms', () => {
      expect(SearchEnhancer.classifyTerm('xyz')).toBe('OTHER');
      expect(SearchEnhancer.classifyTerm('randomword')).toBe('OTHER');
    });
  });

  describe('Type Weights', () => {
    test('should return correct weights for ACTION type', () => {
      const weights = SearchEnhancer.getTypeWeights('ACTION');
      expect(weights.name).toBe(0.7);
      expect(weights.desc).toBe(0.35);
    });

    test('should return correct weights for OBJECT type', () => {
      const weights = SearchEnhancer.getTypeWeights('OBJECT');
      expect(weights.name).toBe(0.2);
      expect(weights.desc).toBe(0.1);
    });

    test('should return correct weights for MODIFIER type', () => {
      const weights = SearchEnhancer.getTypeWeights('MODIFIER');
      expect(weights.name).toBe(0.05);
      expect(weights.desc).toBe(0.025);
    });

    test('should return correct weights for SCOPE type', () => {
      const weights = SearchEnhancer.getTypeWeights('SCOPE');
      expect(weights.name).toBe(0.03);
      expect(weights.desc).toBe(0.015);
    });

    test('should return default weights for unknown type', () => {
      const weights = SearchEnhancer.getTypeWeights('UNKNOWN');
      expect(weights.name).toBe(0.15);
      expect(weights.desc).toBe(0.075);
    });
  });

  describe('Intent Penalty', () => {
    test('should penalize read-only tools when intent is save', () => {
      const penalty = SearchEnhancer.getIntentPenalty('save', 'read_file');
      expect(penalty).toBe(0.3);
    });

    test('should penalize read-only tools when intent is write', () => {
      const penalty = SearchEnhancer.getIntentPenalty('write', 'read_text_file');
      expect(penalty).toBe(0.3);
    });

    test('should not penalize tools with both read and write capabilities', () => {
      const penalty = SearchEnhancer.getIntentPenalty('save', 'read_write_file');
      expect(penalty).toBe(0);
    });

    test('should not penalize tools with edit capability', () => {
      const penalty = SearchEnhancer.getIntentPenalty('save', 'edit_file');
      expect(penalty).toBe(0);
    });

    test('should penalize write-only tools when intent is read', () => {
      const penalty = SearchEnhancer.getIntentPenalty('read', 'write_file');
      expect(penalty).toBe(0.2);
    });

    test('should penalize delete tools when intent is create', () => {
      const penalty = SearchEnhancer.getIntentPenalty('create', 'delete_file');
      expect(penalty).toBe(0.3);
    });

    test('should penalize delete tools when intent is add', () => {
      const penalty = SearchEnhancer.getIntentPenalty('add', 'delete_record');
      expect(penalty).toBe(0.3);
    });

    test('should return no penalty for aligned operations', () => {
      const penalty1 = SearchEnhancer.getIntentPenalty('save', 'write_file');
      const penalty2 = SearchEnhancer.getIntentPenalty('read', 'read_file');
      const penalty3 = SearchEnhancer.getIntentPenalty('delete', 'delete_file');

      expect(penalty1).toBe(0);
      expect(penalty2).toBe(0);
      expect(penalty3).toBe(0);
    });
  });

  describe('Query Analysis', () => {
    test('should analyze query and provide comprehensive information', () => {
      const analysis = SearchEnhancer.analyzeQuery('save text file');

      expect(analysis.terms).toEqual(['save', 'text', 'file']);
      expect(analysis.classifications['save']).toBe('ACTION');
      expect(analysis.classifications['text']).toBe('MODIFIER');
      expect(analysis.classifications['file']).toBe('OBJECT');

      expect(analysis.actionSemantics['save']).toBeDefined();
      expect(analysis.actionSemantics['save']).toContain('write');

      expect(analysis.weights['save'].name).toBe(0.7);
      expect(analysis.weights['text'].name).toBe(0.05);
      expect(analysis.weights['file'].name).toBe(0.2);
    });

    test('should filter short terms in query analysis', () => {
      const analysis = SearchEnhancer.analyzeQuery('save a to file');

      // 'a' and 'to' should be filtered out (length <= 2)
      expect(analysis.terms).toEqual(['save', 'file']);
      expect(analysis.terms).not.toContain('a');
      expect(analysis.terms).not.toContain('to');
    });
  });

  describe('Actions by Category', () => {
    test('should get write category actions', () => {
      const actions = SearchEnhancer.getActionsByCategory('write');
      expect(actions).toContain('save');
      expect(actions).toContain('write');
      expect(actions).toContain('create');
      expect(actions).toContain('store');
    });

    test('should get read category actions', () => {
      const actions = SearchEnhancer.getActionsByCategory('read');
      expect(actions).toContain('read');
      expect(actions).toContain('get');
      expect(actions).toContain('load');
      expect(actions).toContain('fetch');
    });

    test('should get delete category actions', () => {
      const actions = SearchEnhancer.getActionsByCategory('delete');
      expect(actions).toContain('delete');
      expect(actions).toContain('remove');
      expect(actions).toContain('clear');
      expect(actions).toContain('drop');
    });
  });

  describe('Extensibility Methods', () => {
    test('should add new action semantic mapping', () => {
      SearchEnhancer.addActionSemantic('custom', ['test1', 'test2']);
      const semantics = SearchEnhancer.getActionSemantics('custom');
      expect(semantics).toEqual(['test1', 'test2']);
    });

    test('should add terms to type category', () => {
      SearchEnhancer.addTermsToType('CUSTOM_TYPE', ['term1', 'term2']);
      expect(SearchEnhancer.classifyTerm('term1')).toBe('CUSTOM_TYPE');
      expect(SearchEnhancer.classifyTerm('term2')).toBe('CUSTOM_TYPE');
    });

    test('should update type weights', () => {
      SearchEnhancer.updateTypeWeights('CUSTOM_TYPE', 0.5, 0.25);
      const weights = SearchEnhancer.getTypeWeights('CUSTOM_TYPE');
      expect(weights.name).toBe(0.5);
      expect(weights.desc).toBe(0.25);
    });
  });

  describe('Utility Methods', () => {
    test('should get all term types', () => {
      const types = SearchEnhancer.getAllTermTypes();
      expect(types).toContain('ACTION');
      expect(types).toContain('OBJECT');
      expect(types).toContain('MODIFIER');
      expect(types).toContain('SCOPE');
      // Check if array is sorted
      const sorted = [...types].sort();
      expect(types).toEqual(sorted);
    });

    test('should get all actions', () => {
      const actions = SearchEnhancer.getAllActions();
      expect(actions).toContain('save');
      expect(actions).toContain('load');
      expect(actions).toContain('modify');
      // Check if array is sorted
      const sorted = [...actions].sort();
      expect(actions).toEqual(sorted);
    });
  });
});
```

--------------------------------------------------------------------------------
/README-COMPARISON.md:
--------------------------------------------------------------------------------

```markdown
# README Comparison: Old vs New (Story-First)

## 🎯 **What Changed?**

### **Structure Transformation**

**Old README (610 lines):**
```
1. Badges
2. Title
3. Feature description (technical)
4. MCP Paradox section
5. Toy analogy
6. Before/After comparison
7. Prerequisites
8. Installation (2 long sections)
9. Test drive
10. Alternative installation
11. Why it matters
12. Manual setup
13. Popular MCPs
14. Client configurations
15. Advanced features
16. Troubleshooting
17. Deep dive link
18. Contributing
19. License
```

**New README (Story-First, ~350 lines):**
```
1. Badges
2. Title
3. ONE LINE hook (instead of paragraph)
4. The Problem (concise)
5. **THE SIX STORIES** (with reading times)
6. Quick Start (2 options, super clear)
7. The Difference (numbers table)
8. Learn More (organized links)
9. Testimonials
10. Philosophy
11. [Expandable] Full documentation
    - Installation
    - Test drive
    - Project config
    - Advanced features
    - Troubleshooting
    - Popular MCPs
    - Contributing
12. License
```

---

## 💡 **Key Improvements**

### **1. Immediate Hook**

**Old (Technical):**
> "NCP transforms N scattered MCP servers into 1 intelligent orchestrator. Your AI sees just 2 simple tools instead of 50+ complex ones..."

**New (Story):**
> "Your AI doesn't see your 50 tools. It dreams of the perfect tool, and NCP finds it instantly."

**Why better:** One sentence. No jargon. Instantly understood.

---

### **2. Problem Statement**

**Old:**
- 4 paragraphs with analogies (toys, buffet, poet)
- Great content but too much upfront

**New:**
- 4 bullet points
- Problem → Why it matters → Done
- Analogies moved to stories

**Why better:** Respects reader's time. They can deep-dive via stories if interested.

---

### **3. Core Innovation: The Six Stories**

**Old:**
- Features described inline as you read
- Technical explanations mixed with benefits
- Hard to find specific information later

**New:**
- **Six named stories** at top (like a table of contents)
- Each story: Problem + Solution + Result (one line)
- Reading time shown (2 min each)
- Full stories in separate pages

**Why better:**
- **Scannable:** See all benefits in 30 seconds
- **Memorable:** "Oh, the clipboard handshake story!"
- **Referenceable:** "Read Story 2 for security"
- **Self-documenting:** Each story is complete explanation

**Example:**
```markdown
### 🔐 Story 2: Secrets in Plain Sight *2 min*
> **Problem:** API keys exposed in AI chat logs forever
> **Solution:** Clipboard handshake keeps secrets server-side
> **Result:** AI never sees your tokens, full security + convenience
```

User reads this and immediately knows:
1. What the problem is
2. How NCP solves it
3. What benefit they get
4. Where to read more (link)
5. Time investment (2 min)

---

### **4. Quick Start Clarity**

**Old:**
- Prerequisites first (Node.js, npm...)
- Two installation methods mixed
- Takes 3 sections to get to "how to start"

**New:**
- Quick Start second (right after stories)
- Two clear options:
  - Option 1: Claude Desktop (3 steps, 30 seconds)
  - Option 2: Other clients (code block, 2 minutes)
- Prerequisites moved to full installation section

**Why better:** User can start immediately if they want, or read stories first if they're evaluating.

---

### **5. Social Proof**

**New section added:**
- User testimonials
- Beta tester feedback
- Real quotes about experience

**Why important:** Stories explain features. Testimonials prove they work.

---

### **6. Philosophy Statement**

**New section added:**
```markdown
## Philosophy

Constraints spark creativity. Infinite options paralyze.

Give it 50 tools → Analysis paralysis
Give it a way to dream → Focused action
```

**Why important:** Explains the "why" behind NCP's design. Makes the approach memorable.

---

### **7. Organized "Learn More"**

**Old:**
- Everything inline
- Hard to find specific topics
- No clear hierarchy

**New:**
- Three sections:
  - **For Users** (stories, installation, troubleshooting)
  - **For Developers** (technical docs, contributing)
  - **For Teams** (project config, workflows, security)
- Clear progression from beginner to advanced

**Why better:** Right information for right audience. Users don't see developer docs upfront. Developers can skip to technical details.

---

### **8. Full Documentation Collapsed**

**Old:**
- Everything at top level
- Must scroll through all content
- Hard to find specific section

**New:**
- Quick start at top (30-second view)
- Full docs collapsed below
- Can expand if needed, or skip if not

**Why better:** Respects different reader goals:
- "Just tell me what this does" → Read first 3 sections (2 min)
- "I want to install" → Quick Start (30 sec)
- "I need details" → Expand full docs (as needed)

---

## 📊 **Length Comparison**

| Section | Old | New | Change |
|---------|-----|-----|--------|
| **Above the fold** | 120 lines | 80 lines | **-33%** (more concise) |
| **Core content** | 610 lines | 350 lines | **-43%** (moved to stories) |
| **Information lost** | 0% | 0% | **(nothing removed)** |

**Net result:** Same information, half the scrolling, stories as deep-dives.

---

## 🎯 **User Journey Comparison**

### **Old README Journey:**

```
User arrives
→ Reads badges
→ Sees technical description (confused?)
→ Reads paradox section (getting it...)
→ Reads toy analogy (okay, I understand now)
→ Reads buffet analogy (okay, got it already!)
→ Before/after (good comparison)
→ Prerequisites (ugh, do I need to install Node?)
→ Installation section 1 (long)
→ Installation section 2 (longer)
→ [50% of users left by now]
→ Test drive section
→ Alternative installation
→ Why it matters (should this be at top?)
→ Manual setup
→ ...continues for 600 lines...

Total time to understand value: 10-15 minutes
Decision made at: Line 300 (5-7 minutes)
Information overload: High
```

### **New README Journey:**

```
User arrives
→ Reads badges
→ Sees ONE LINE hook ("AI dreams of tool")
→ "Oh! I get it immediately."
→ Reads problem bullets (30 seconds)
→ "Yes, I have this problem!"
→ Sees six stories with Problem/Solution/Result
→ "Hmm, Story 2 about secrets sounds important..."
→ Clicks Story 2 link, reads 2-minute story
→ "This is brilliant! I want this."
→ Back to README, clicks Quick Start
→ Installs in 30 seconds or 2 minutes
→ Done!

Total time to understand value: 2-3 minutes
Decision made at: After reading 1-2 stories
Information overload: Low (they control depth)
```

**Key difference:** Stories let user control information depth. Want overview? Read summaries (30 sec). Want details? Read full story (2 min). Want everything? Read all six (12 min).

---

## 🎨 **Tone Comparison**

### **Old:**
> "NCP transforms N scattered MCP servers into 1 intelligent orchestrator using semantic vector search..."

- Technical-first
- Feature-focused
- Industry jargon
- Assumes MCP knowledge

### **New:**
> "Your AI doesn't see your 50 tools. It dreams of the perfect tool, and NCP finds it instantly."

- Benefit-first
- Problem-focused
- Plain language
- No assumptions

**Target audience shift:**
- **Old:** Developers who already understand MCPs
- **New:** Anyone who uses AI (then educates about MCPs)

---

## 💬 **Feedback Expectations**

### **What users will say about OLD:**
- "I don't understand what orchestrator means"
- "Too much text, I'm not reading all that"
- "Sounds technical, is this for developers only?"
- "I get lost halfway through"

### **What users will say about NEW:**
- "Oh! The dream metaphor clicked instantly"
- "I read Story 1 and immediately got it"
- "This is the first MCP tool I actually understand"
- "The stories make it memorable"

---

## ✅ **Migration Checklist**

To migrate from old to new README:

- [x] Create new story-first README
- [x] Keep all information (nothing lost)
- [x] Move deep dives to story pages
- [x] Add story index at top
- [x] Condense problem statement
- [x] Simplify quick start
- [x] Add testimonials section
- [x] Add philosophy statement
- [x] Organize "Learn More" by audience
- [ ] Replace README.md with README.new.md
- [ ] Update any links pointing to old sections
- [ ] Get user feedback

---

## 🚀 **Expected Outcomes**

### **Metrics we expect to improve:**

1. **Time to understand value:**
   - Old: 10-15 minutes
   - New: 2-3 minutes
   - **Improvement: 5x faster**

2. **Conversion rate (understanding → installing):**
   - Old: ~20% (many confused or overwhelmed)
   - New: ~60% (clear value prop + easy start)
   - **Improvement: 3x better**

3. **Story sharing:**
   - Old: "Check out NCP, it's an MCP orchestrator"
   - New: "Check out NCP, your AI dreams of tools!"
   - **Improvement: Viral potential** (memorable hook)

4. **Support questions:**
   - Old: "What does NCP do exactly?"
   - New: "How do I configure X?" (they already understand WHY)
   - **Improvement: Higher-quality questions**

---

## 🎯 **Recommendation**

**Replace old README with new story-first README.**

**Why:**
- ✅ Same information, better organization
- ✅ Faster time to value
- ✅ Stories make features memorable
- ✅ Aligns with story-first development workflow
- ✅ Nothing is lost (all content preserved in stories)

**Risks:**
- Some users might prefer old style (technical-first)
- Links to old sections will need updating

**Mitigation:**
- Keep old README as `README.old.md` for reference
- Update CHANGELOG to note README restructure
- Monitor GitHub issues for confusion
- Iterate based on feedback

---

**Ready to make the switch?** 🚀

```

--------------------------------------------------------------------------------
/test/orchestrator-health-integration.test.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * Tests for orchestrator health monitoring integration
 * Verifies that MCP failures are properly tracked in health monitor
 */

import { NCPOrchestrator } from '../src/orchestrator/ncp-orchestrator.js';
import { MCPHealthMonitor } from '../src/utils/health-monitor.js';
import { ProfileManager } from '../src/profiles/profile-manager.js';
import { jest } from '@jest/globals';
import { tmpdir } from 'os';
import { join } from 'path';
import { mkdirSync, writeFileSync, rmSync } from 'fs';

describe('Orchestrator Health Monitoring Integration', () => {
  let orchestrator: NCPOrchestrator;
  let tempDir: string;
  let mockProfilePath: string;

  beforeEach(() => {
    // Create temporary directory for test profiles
    tempDir = join(tmpdir(), `ncp-test-${Date.now()}`);
    mkdirSync(tempDir, { recursive: true });
    mockProfilePath = join(tempDir, 'profiles');
    mkdirSync(mockProfilePath, { recursive: true });

    // Mock the home directory to use our temp directory
    jest.spyOn(require('os'), 'homedir').mockReturnValue(tempDir);

    orchestrator = new NCPOrchestrator('test-profile');
  });

  afterEach(async () => {
    if (orchestrator) {
      await orchestrator.cleanup();
    }

    // Clean up temp directory
    try {
      rmSync(tempDir, { recursive: true, force: true });
    } catch (error) {
      // Ignore cleanup errors
    }
    jest.restoreAllMocks();
  });

  describe('MCP Discovery Health Tracking', () => {
    test('should track health during MCP discovery failures', async () => {
      // Create profile with invalid MCP
      const profileData = {
        mcpServers: {
          'failing-mcp': {
            command: 'npx',
            args: ['-y', '@non-existent/invalid-package']
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      // Spy on health monitor
      const healthMonitor = new MCPHealthMonitor();
      const markUnhealthySpy = jest.spyOn(healthMonitor, 'markUnhealthy');

      // Initialize orchestrator (this triggers discovery)
      await orchestrator.initialize();

      // Verify health monitor was called for the failing MCP
      // Note: The actual implementation might use a different health monitor instance
      // This tests the integration pattern rather than the exact spy calls

      // Check that no tools were discovered from the failing MCP
      const results = await orchestrator.find('', 10, false);

      // Should not contain any tools from failing-mcp
      const failingMcpTools = results.filter(r => r.mcpName === 'failing-mcp');
      expect(failingMcpTools).toHaveLength(0);
    });

    test('should handle mixed healthy and unhealthy MCPs', async () => {
      // Create profile with both valid and invalid MCPs
      const profileData = {
        mcpServers: {
          'valid-echo': {
            command: 'echo',
            args: ['hello']
          },
          'invalid-package': {
            command: 'npx',
            args: ['-y', '@definitely-does-not-exist/package']
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      await orchestrator.initialize();

      // Should initialize without throwing even with some failing MCPs
      const results = await orchestrator.find('', 10, false);

      // Results should not contain tools from failing MCPs
      expect(results.every(r => r.mcpName !== 'invalid-package')).toBe(true);
    });

    test('should track health during tool execution', async () => {
      // Create profile with echo command for testing
      const profileData = {
        mcpServers: {
          'test-mcp': {
            command: 'echo',
            args: ['test-response']
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      await orchestrator.initialize();

      // Try to run a tool (even if it doesn't exist, should track health)
      const result = await orchestrator.run('test-mcp:non-existent-tool', {});

      // Should handle the execution attempt gracefully
      expect(result).toBeDefined();
      expect(result.success).toBeDefined();
    });
  });

  describe('Health Filter Integration', () => {
    test('should filter out tools from unhealthy MCPs in find results', async () => {
      // This tests the health filtering that happens in the find method
      const profileData = {
        mcpServers: {
          'test-mcp': {
            command: 'echo',
            args: ['test']
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      await orchestrator.initialize();

      // Mock health monitor to mark MCP as unhealthy
      const healthMonitor = new MCPHealthMonitor();
      healthMonitor.markUnhealthy('test-mcp', 'Test error');

      // Find should respect health status
      const results = await orchestrator.find('', 10, false);

      // Should handle health filtering without throwing
      expect(Array.isArray(results)).toBe(true);
    });

    test('should handle getAllResources with health filtering', async () => {
      const profileData = {
        mcpServers: {
          'resource-mcp': {
            command: 'echo',
            args: ['resources']
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      await orchestrator.initialize();

      // Should handle resource retrieval with health filtering
      const resources = await orchestrator.getAllResources();
      expect(Array.isArray(resources)).toBe(true);
    });

    test('should handle getAllPrompts with health filtering', async () => {
      const profileData = {
        mcpServers: {
          'prompt-mcp': {
            command: 'echo',
            args: ['prompts']
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      await orchestrator.initialize();

      // Should handle prompt retrieval with health filtering
      const prompts = await orchestrator.getAllPrompts();
      expect(Array.isArray(prompts)).toBe(true);
    });
  });

  describe('Error Handling and Recovery', () => {
    test('should handle complete discovery failure gracefully', async () => {
      // Create profile with only failing MCPs
      const profileData = {
        mcpServers: {
          'fail1': { command: 'non-existent-command', args: [] },
          'fail2': { command: '/invalid/path', args: [] },
          'fail3': { command: 'npx', args: ['-y', '@invalid/package'] }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      // Should initialize without throwing even with all MCPs failing
      await expect(orchestrator.initialize()).resolves.toBeUndefined();

      // Should return empty results gracefully
      const results = await orchestrator.find('test', 10, false);
      expect(Array.isArray(results)).toBe(true);
    });

    test('should handle profile loading errors', async () => {
      // Don't create profile file to trigger error

      // Should handle missing profile gracefully
      await expect(orchestrator.initialize()).resolves.toBeUndefined();

      const results = await orchestrator.find('test', 10, false);
      expect(Array.isArray(results)).toBe(true);
      expect(results).toHaveLength(0);
    });

    test('should track connection failures during tool execution', async () => {
      const profileData = {
        mcpServers: {
          'connection-test': {
            command: 'sleep',
            args: ['1'] // Short sleep that should succeed initially
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      await orchestrator.initialize();

      // Attempt tool execution (will likely fail but should be tracked)
      const result = await orchestrator.run('connection-test:some-tool', {});

      // Should handle execution failure gracefully
      expect(result).toBeDefined();
      expect(typeof result.success).toBe('boolean');
    });
  });

  describe('Health Status Integration', () => {
    test('should maintain health status across orchestrator lifecycle', async () => {
      const profileData = {
        mcpServers: {
          'lifecycle-test': {
            command: 'echo',
            args: ['lifecycle']
          }
        }
      };

      const profileFile = join(mockProfilePath, 'test-profile.json');
      writeFileSync(profileFile, JSON.stringify(profileData, null, 2));

      // Initialize and use orchestrator
      await orchestrator.initialize();

      // Perform some operations
      await orchestrator.find('test', 5, false);
      await orchestrator.getAllResources();

      // Cleanup should work without issues
      await orchestrator.cleanup();

      // Should be able to create new instance
      const newOrchestrator = new NCPOrchestrator('test-profile');
      await newOrchestrator.initialize();
      await newOrchestrator.cleanup();
    });
  });
});
```

--------------------------------------------------------------------------------
/docs/guides/testing.md:
--------------------------------------------------------------------------------

```markdown
# NCP Testing Guide

## Overview

This document outlines comprehensive testing strategies for NCP to ensure the MCP interface works correctly and there are no regressions before release.

## Test Categories

### 1. Automated Unit Tests ✅ (Existing)
**Status**: Currently passing with comprehensive coverage

**What's Covered**:
- Core orchestrator functionality
- Discovery engine semantic search
- Health monitoring
- Tool schema parsing
- Cache management
- Error handling
- CLI command functionality

**Run Tests**:
```bash
npm test
```

### 2. MCP Interface Integration Tests

#### 2.1 MCP Server Mode Testing
**Purpose**: Verify NCP works correctly as an MCP server for AI clients

**Test Commands**:
```bash
# Test MCP server mode startup
node dist/index.js --profile all

# Should output valid MCP initialization and wait for stdin
# Ctrl+C to exit after verifying initialization
```

**Expected Behavior**:
- Clean startup with no errors
- Proper MCP protocol initialization
- Responsive to JSON-RPC requests

#### 2.2 Tool Discovery Testing
**Purpose**: Verify semantic discovery works end-to-end

**Setup**:
```bash
# Add test MCPs
ncp add filesystem npx @modelcontextprotocol/server-filesystem /tmp
ncp add memory npx @modelcontextprotocol/server-memory
```

**Test Commands**:
```bash
# Test discovery functionality
ncp find "file operations"
ncp find "memory tools"
ncp find "read"
ncp find ""  # Should handle empty query gracefully
```

**Expected Results**:
- Relevant tools returned with confidence scores
- Proper formatting and descriptions
- No crashes or errors
- Reasonable response times (<2 seconds)

#### 2.3 Tool Execution Testing
**Purpose**: Verify tool execution through NCP interface

**Test Commands**:
```bash
# Test tool execution with parameters
echo "test content" > /tmp/ncp-test.txt
ncp run filesystem:read_file --params '{"path": "/tmp/ncp-test.txt"}'

# Test tool execution without parameters
ncp run memory:create_entities --params '{}'

# Test invalid tool execution
ncp run nonexistent:tool --params '{}'
```

**Expected Results**:
- Successful execution returns proper results
- Error handling for invalid tools/parameters
- Clear error messages for debugging

### 3. Configuration Management Testing

#### 3.1 Import Functionality Testing
**Purpose**: Verify the simplified import interface works correctly

**Test Scenarios**:

**Clipboard Import**:
```bash
# Test 1: Multiple MCPs
echo '{"filesystem": {"command": "npx", "args": ["@modelcontextprotocol/server-filesystem", "/tmp"]}, "memory": {"command": "npx", "args": ["@modelcontextprotocol/server-memory"]}}' | pbcopy
ncp config import --dry-run

# Test 2: Single MCP (should prompt for name)
echo '{"command": "npx", "args": ["@modelcontextprotocol/server-memory"]}' | pbcopy
echo "test-memory" | ncp config import --dry-run

# Test 3: Empty clipboard
echo "" | pbcopy
ncp config import
```

**File Import**:
```bash
# Create test config file
cat > test-config.json << EOF
{
  "filesystem": {
    "command": "npx",
    "args": ["@modelcontextprotocol/server-filesystem", "/tmp"]
  }
}
EOF

# Test file import
ncp config import test-config.json --dry-run
rm test-config.json
```

**Expected Results**:
- JSON displayed in highlighted box
- Correct parsing and validation
- Proper error messages for invalid JSON/empty clipboard
- Successful import with detailed feedback

#### 3.2 Profile Management Testing
**Purpose**: Verify profile system works correctly

**Test Commands**:
```bash
# Test profile creation and management
ncp add test-server echo --profiles test-profile
ncp list --profile test-profile
ncp remove test-server --profiles test-profile
ncp list --profile test-profile  # Should be empty

# Test default profile
ncp list --profile all
```

### 4. Client Integration Testing

#### 4.1 Claude Desktop Integration Test
**Purpose**: Verify NCP works with Claude Desktop

**Manual Test Steps**:
1. Add NCP to Claude Desktop config:
```json
{
  "mcpServers": {
    "ncp": {
      "command": "ncp",
      "args": ["--profile", "all"]
    }
  }
}
```

2. Restart Claude Desktop
3. Test in Claude Desktop:
   - Ask: "What tools are available for file operations?"
   - Ask: "Read the file /tmp/ncp-test.txt"
   - Verify NCP's `find` and `run` tools appear
   - Verify tool execution works correctly

**Expected Results**:
- NCP appears as available MCP server
- `find` and `run` tools visible to Claude
- Semantic discovery works through Claude interface
- Tool execution successful

#### 4.2 VS Code Integration Test (If Available)
**Purpose**: Verify NCP works with VS Code MCP extension

**Test Steps**:
1. Configure NCP in VS Code settings
2. Test tool discovery and execution
3. Verify no conflicts with other MCP servers

### 5. Performance & Reliability Testing

#### 5.1 Load Testing
**Purpose**: Verify NCP handles multiple requests correctly

**Test Script**:
```bash
# Concurrent discovery tests
for i in {1..10}; do
  ncp find "file tools" &
done
wait

# Sequential execution tests
for i in {1..5}; do
  ncp run memory:create_entities --params '{"entities": ["test'$i'"]}'
done
```

**Expected Results**:
- No crashes under concurrent load
- Consistent response times
- Proper resource cleanup

#### 5.2 Memory & Resource Testing
**Purpose**: Verify no memory leaks or resource issues

**Test Commands**:
```bash
# Long-running discovery tests
for i in {1..100}; do
  ncp find "test query $i" > /dev/null
done

# Monitor memory usage during test
# Should remain stable, not continuously grow
```

### 6. Error Handling & Edge Cases

#### 6.1 MCP Server Failure Testing
**Purpose**: Verify graceful handling of MCP server failures

**Test Steps**:
1. Add a failing MCP server:
```bash
ncp add failing-server nonexistent-command
```

2. Test discovery with failing server:
```bash
ncp find "tools"  # Should still return results from healthy servers
ncp list --depth 1  # Should show health status
```

**Expected Results**:
- Healthy servers continue working
- Failed servers marked as unhealthy
- Clear error messages for debugging

#### 6.2 Invalid Input Testing
**Purpose**: Verify robust error handling

**Test Commands**:
```bash
# Invalid JSON in tool execution
ncp run filesystem:read_file --params 'invalid json'

# Non-existent tools
ncp run fake:tool --params '{}'

# Invalid parameters
ncp run filesystem:read_file --params '{"invalid": "parameter"}'
```

**Expected Results**:
- Clear error messages
- No crashes or undefined behavior
- Helpful suggestions for fixing issues

### 7. Regression Testing

#### 7.1 Feature Regression Tests
**Purpose**: Ensure existing functionality still works after changes

**Critical Paths to Test**:
1. Basic MCP server startup
2. Tool discovery with various queries
3. Tool execution with parameters
4. Configuration import/export
5. Profile management
6. Health monitoring

#### 7.2 CLI Regression Tests
**Purpose**: Verify CLI commands still work correctly

**Commands to Test**:
```bash
ncp --help
ncp find --help
ncp config --help
ncp list --help
ncp add --help
ncp run --help
```

### 8. Release Verification Checklist

#### Pre-Release Checklist ✅
- [ ] All unit tests passing
- [ ] MCP server mode starts cleanly
- [ ] Tool discovery returns relevant results
- [ ] Tool execution works correctly
- [ ] Import functionality works (clipboard & file)
- [ ] Profile management works
- [ ] Claude Desktop integration verified
- [ ] Error handling graceful
- [ ] Performance acceptable
- [ ] Documentation updated
- [ ] CLI help accurate

#### Manual Integration Test Script
```bash
#!/bin/bash
# Quick integration test script

echo "🧪 Starting NCP Integration Tests..."

# 1. Basic setup
echo "📦 Testing basic setup..."
npm run build
echo '{"test": {"command": "echo", "args": ["hello"]}}' | pbcopy
ncp config import --dry-run

# 2. Tool discovery
echo "🔍 Testing tool discovery..."
ncp find "file"
ncp find "memory"

# 3. Configuration
echo "⚙️  Testing configuration..."
ncp list
ncp config validate

# 4. Server mode (5 second test)
echo "🖥️  Testing MCP server mode (5 seconds)..."
timeout 5s node dist/index.js --profile all || echo "Server mode test completed"

echo "✅ Integration tests completed!"
```

### 9. Automated Testing in CI/CD

#### GitHub Actions Test Matrix
Consider adding these test scenarios to CI:
- Node.js versions: 18, 20, 22
- Platforms: Ubuntu, macOS, Windows
- Profile configurations: empty, single MCP, multiple MCPs
- Import scenarios: clipboard, file, edge cases

#### Performance Benchmarks
Track these metrics over time:
- Tool discovery response time
- Memory usage during operations
- Startup time
- Cache loading performance

### 10. User Acceptance Testing

#### Beta Testing Scenarios
1. **New User Onboarding**:
   - Install NCP globally
   - Import existing Claude Desktop config
   - Test discovery and execution

2. **Power User Workflows**:
   - Multiple profiles setup
   - Complex tool queries
   - Bulk operations

3. **Edge Case Scenarios**:
   - Large number of MCPs
   - Network issues
   - Corrupted configurations

## Running the Full Test Suite

```bash
# 1. Unit tests
npm test

# 2. Build verification
npm run build

# 3. Basic integration tests
./test-integration.sh  # Create the script above

# 4. Manual Claude Desktop test
# Follow section 4.1 steps

# 5. Performance spot check
time ncp find "test"
time ncp run memory:create_entities --params '{}'
```

## Conclusion

This comprehensive testing strategy ensures:
- ✅ **No Regressions**: Existing functionality continues working
- ✅ **MCP Protocol Compliance**: Proper MCP server behavior
- ✅ **User Experience**: Import and discovery features work smoothly
- ✅ **Reliability**: Graceful error handling and recovery
- ✅ **Performance**: Acceptable response times and resource usage

Execute these tests before any release to ensure NCP works correctly as both an MCP server and orchestration layer.
```

--------------------------------------------------------------------------------
/test/helpers/mock-server-manager.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * Helper to manage mock server processes for tests
 */
import { spawn, ChildProcess } from 'child_process';
import { promisify } from 'util';
import { join } from 'path';

const wait = promisify(setTimeout);

/**
 * Interface to track server readiness state
 */
interface ServerState {
  sawStdout: boolean;
  sawStderr: boolean;
  sawReady: boolean;
  sawError: boolean;
  lastError: string;
  outputLog: string[];
}

/**
 * Manages mock server processes for testing
 */
export class MockServerManager {
  private readonly servers: Map<string, ChildProcess>;
  private readonly timeouts: Set<NodeJS.Timeout>;
  private readonly MAX_RETRIES = 5;
  private readonly RETRY_DELAY = 3000;
  private readonly TIMEOUT_MS = 10000;

  constructor() {
    this.servers = new Map();
    this.timeouts = new Set();
  }

  /**
   * Register a timeout so we can clean it up later
   */
  private trackTimeout(timeout: NodeJS.Timeout): NodeJS.Timeout {
    this.timeouts.add(timeout);
    return timeout;
  }

  /**
   * Clear a specific timeout and remove it from tracking
   */
  private clearTrackedTimeout(timeout: NodeJS.Timeout): void {
    clearTimeout(timeout);
    this.timeouts.delete(timeout);
  }

  /**
   * Clear all tracked timeouts
   */
  private clearAllTimeouts(): void {
    for (const timeout of this.timeouts) {
      clearTimeout(timeout);
    }
    this.timeouts.clear();
  }

  async startServer(name: string, serverScript: string): Promise<void> {
    if (this.servers.has(name)) {
      return; // Server already running
    }

    // Retry loop for starting server
    for (let attempt = 1; attempt <= this.MAX_RETRIES; attempt++) {
      try {
        console.error(`Starting ${name} server (attempt ${attempt}/${this.MAX_RETRIES})...`);
        
        const scriptPath = join(__dirname, '..', 'mock-mcps', serverScript);
        console.error(`[DEBUG] Starting server from path: ${scriptPath}`);
        
        const serverProcess = spawn('node', [scriptPath], {
          stdio: ['pipe', 'pipe', 'pipe'],
          detached: false,
          env: {
            ...process.env,
            NODE_ENV: 'test',
            DEBUG: '*',
            FORCE_COLOR: '0'
          }
        });
        
        // Handle process errors
        serverProcess.on('spawn', () => {
          console.error(`[DEBUG] Process spawned for ${name} server with pid ${serverProcess.pid}`);
        });

        // Wait for server to signal it's ready
        await new Promise<void>((resolve, reject) => {
          const state: ServerState = {
            sawStdout: false,
            sawStderr: false,
            sawReady: false,
            sawError: false,
            lastError: '',
            outputLog: []
          };

          const logOutput = (type: string, msg: string) => {
            state.outputLog.push(`[${type}] ${msg.trim()}`);
            if (state.outputLog.length > 100) {
              state.outputLog.shift();
            }
          };

          // Set timeout for server startup
          const readyTimeout = this.trackTimeout(setTimeout(() => {
            // Print output log for diagnosis
            console.error('Recent output:', state.outputLog.join('\n'));
            
            // Log timeout status
            console.error(`Timeout status for ${name} server:`, {
              pid: serverProcess.pid,
              ...state,
              uptime: process.uptime(),
              memory: process.memoryUsage()
            });
            
            if (!serverProcess.killed) {
              console.error(`Killing ${name} server (pid: ${serverProcess.pid})...`);
              try {
                serverProcess.kill('SIGTERM');
                // Force kill after 1s if SIGTERM doesn't work
                this.trackTimeout(setTimeout(() => {
                  if (!serverProcess.killed) {
                    console.error(`Force killing ${name} server...`);
                    try {
                      serverProcess.kill('SIGKILL');
                    } catch (err) {
                      // Ignore kill errors
                    }
                  }
                }, 1000));
              } catch (err) {
                console.error(`Error killing ${name} server:`, err);
              }
            }
            reject(new Error(`Timeout waiting for ${name} server to start - ${state.lastError}`));
          }, this.TIMEOUT_MS));

          // Enhanced stdout handling with buffering
          let stdoutBuffer = '';
          serverProcess.stdout?.on('data', (data: Buffer) => {
            state.sawStdout = true;
            const output = data.toString();
            stdoutBuffer += output;
            logOutput('STDOUT', output);
            
            // Check for ready signal in accumulated buffer
            if (stdoutBuffer.includes(`[READY] ${name}`)) {
              state.sawReady = true;
              console.error(`[DEBUG] ${name} server ready signal received in stdout buffer (attempt ${attempt}/${this.MAX_RETRIES})`);
              this.clearTrackedTimeout(readyTimeout);
              this.servers.set(name, serverProcess);
              resolve();
            }
            
            // Check for various error conditions
            if (output.includes('Failed to load MCP SDK dependencies')) {
              state.sawError = true;
              state.lastError = 'Failed to load SDK dependencies';
              console.error(`[ERROR] ${name} server failed to load dependencies (attempt ${attempt}/${this.MAX_RETRIES})`);
              this.clearTrackedTimeout(readyTimeout);
              serverProcess.kill('SIGTERM');
              reject(new Error('Server failed to load dependencies'));
              return;
            }
            
            if (output.includes('Error:') || output.includes('Error stack:') || output.includes('Failed to')) {
              state.sawError = true;
              state.lastError = output.trim();
            }
          });

          // Enhanced stderr handling with buffering
          let stderrBuffer = '';
          serverProcess.stderr?.on('data', (data: Buffer) => {
            state.sawStderr = true;
            const output = data.toString();
            stderrBuffer += output;
            logOutput('STDERR', output);
            
            // Collect error messages
            if (output.includes('Error:') || output.includes('Failed to')) {
              state.sawError = true;
              state.lastError = output.trim();
            }
            
            // Check for ready signal in accumulated buffer
            if (stderrBuffer.includes(`[READY] ${name}`)) {
              state.sawReady = true;
              console.error(`[DEBUG] ${name} server ready signal received in stderr buffer`);
              this.clearTrackedTimeout(readyTimeout);
              this.servers.set(name, serverProcess);
              resolve();
            }
          });

          // Set up error handling
          serverProcess.on('error', (err: Error) => {
            this.clearTrackedTimeout(readyTimeout);
            console.error(`Error in mock server ${name}:`, err);
            console.error(`Error status for ${name}:`, {
              pid: serverProcess.pid,
              ...state
            });
            reject(err);
          });

          // Set up exit handling
          serverProcess.on('exit', (code: number | null) => {
            console.error(`Mock server ${name} (pid: ${serverProcess.pid}) exited with code ${code}`, {
              ...state
            });
            this.servers.delete(name);
          });
        });

        // Successfully started server
        return;
      } catch (err) {
        const errorMessage = err instanceof Error ? err.message : 'Unknown error';
        console.error(`Attempt ${attempt} failed:`, errorMessage);
        if (attempt < this.MAX_RETRIES) {
          // Wait before retrying using Jest's fake timer
          await wait(this.RETRY_DELAY);
        }
      }
    }

    // All retries failed
    throw new Error(`Failed to start ${name} server after ${this.MAX_RETRIES} attempts`);
  }

  async stopAll(): Promise<void> {
    console.error('[DEBUG] Stopping all servers...');
    
    // Clean up all timeouts first
    this.clearAllTimeouts();
    
    // Give processes a chance to clean up gracefully
    for (const [name, serverProcess] of this.servers.entries()) {
      try {
        console.error(`[DEBUG] Sending SIGTERM to ${name} server (pid: ${serverProcess.pid})...`);
        // Send SIGTERM first to allow clean shutdown
        serverProcess.kill('SIGTERM');
        
        // Remove from map immediately to prevent duplicate cleanup
        this.servers.delete(name);
        
        console.error(`[DEBUG] Successfully sent SIGTERM to ${name} server`);
      } catch (err) {
        console.error(`[ERROR] Error stopping server ${name}:`, err);
      }
    }

    // Wait longer for graceful shutdown
    console.error('[DEBUG] Waiting for processes to exit gracefully...');
    await wait(1000);

    // Force kill any remaining processes
    const remainingServers = new Map(this.servers);
    for (const [name, serverProcess] of remainingServers.entries()) {
      try {
        console.error(`[DEBUG] Force killing ${name} server (pid: ${serverProcess.pid})...`);
        // Kill process group to ensure child processes are terminated
        process.kill(-serverProcess.pid!, 'SIGKILL');
        this.servers.delete(name);
        console.error(`[DEBUG] Successfully killed ${name} server`);
      } catch (err: any) {
        // Only log if it's not a "no such process" error
        if (err instanceof Error && !err.message.includes('ESRCH')) {
          console.error(`[ERROR] Error force killing server ${name}:`, err);
        }
      }
    }

    // Clear any remaining entries and wait for final cleanup
    console.error('[DEBUG] Cleaning up server references...');
    this.servers.clear();
    await wait(100);
    console.error('[DEBUG] Server cleanup complete');
  }

  /**
   * Get all currently running servers
   */
  getAllServers(): Map<string, ChildProcess> {
    return new Map(this.servers);
  }
}
```

--------------------------------------------------------------------------------
/test/curated-ecosystem-validation.test.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * Curated Ecosystem Validation Tests
 *
 * Tests NCP's discovery capabilities with our high-quality curated MCP ecosystem
 */

import { DiscoveryEngine } from '../src/discovery/engine.js';
import fs from 'fs/promises';
import path from 'path';

describe.skip('Curated Ecosystem Validation', () => {
  let engine: DiscoveryEngine;

  beforeAll(async () => {
    engine = new DiscoveryEngine();
    await engine.initialize();

    // Load actual curated ecosystem profile
    const profilePath = path.join(process.cwd(), 'profiles', 'curated-mcp-ecosystem.json');
    const profile = JSON.parse(await fs.readFile(profilePath, 'utf-8'));

    // Extract tools from the ecosystem builder directory
    const ecosystemBuilderPath = path.resolve('../ncp-ecosystem-builder');
    const clonesDir = path.join(ecosystemBuilderPath, 'generated/clones');

    try {
      const files = await fs.readdir(clonesDir);
      const mcpFiles = files.filter(f => f.endsWith('.js'));

      // Index each MCP
      for (const file of mcpFiles) {
        const mcpName = file.replace('-curated-dummy.js', '').replace('-dummy.js', '');

        // Import the MCP to get its tools
        const mcpPath = path.join(clonesDir, file);
        try {
          const { tools } = await import(mcpPath);
          if (tools && tools.length > 0) {
            await engine['ragEngine'].indexMCP(mcpName, tools);
          }
        } catch (error: any) {
          // Fallback to profile descriptions
          const serverInfo = profile.mcpServers[mcpName] as any;
          if (serverInfo) {
            await engine['ragEngine'].indexMCP(mcpName, [{
              name: mcpName,
              description: serverInfo.description
            }]);
          }
        }
      }
    } catch (error) {
      console.warn('Could not load ecosystem builder MCPs, using profile fallback');

      // Fallback: use profile information only
      for (const [mcpName, serverInfo] of Object.entries(profile.mcpServers)) {
        await engine['ragEngine'].indexMCP(mcpName, [{
          name: mcpName,
          description: (serverInfo as any).description
        }]);
      }
    }
  });

  describe('Database Discovery', () => {
    it('finds PostgreSQL tools for database operations', async () => {
      const results = await engine.findRelevantTools(
        'I need to execute SQL queries on PostgreSQL database',
        8
      );

      expect(results.length).toBeGreaterThan(0);

      const pgTool = results.find((t: any) =>
        t.name.includes('postgres') ||
        t.name.includes('execute_query') ||
        t.description?.toLowerCase().includes('postgresql') ||
        t.description?.toLowerCase().includes('postgres')
      );
      expect(pgTool).toBeDefined();
      expect(results.indexOf(pgTool!)).toBeLessThan(5);
    });

    it('finds appropriate database tools for different databases', async () => {
      const results = await engine.findRelevantTools(
        'I want to work with SQLite lightweight database for my application',
        8
      );

      expect(results.length).toBeGreaterThan(0);

      // Should find SQLite for lightweight usage
      const sqliteTool = results.find((t: any) =>
        t.name.includes('sqlite') ||
        t.description?.toLowerCase().includes('sqlite') ||
        t.description?.toLowerCase().includes('lightweight')
      );
      expect(sqliteTool).toBeDefined();
    });
  });

  describe('Cloud & Infrastructure Discovery', () => {
    it('finds AWS tools for cloud deployment', async () => {
      const results = await engine.findRelevantTools(
        'I need to deploy a server instance on AWS',
        6
      );

      expect(results.length).toBeGreaterThan(0);

      const awsTool = results.find((t: any) =>
        t.name.includes('aws') || t.name.includes('launch_ec2') || t.description?.toLowerCase().includes('aws')
      );
      expect(awsTool).toBeDefined();
      expect(results.indexOf(awsTool!)).toBeLessThan(5);
    });

    it('finds Docker tools for containerization', async () => {
      const results = await engine.findRelevantTools(
        'I want to containerize my application with Docker containers',
        8
      );

      expect(results.length).toBeGreaterThan(0);

      const dockerTool = results.find((t: any) =>
        t.name.includes('docker') ||
        t.description?.toLowerCase().includes('docker') ||
        t.description?.toLowerCase().includes('container')
      );
      expect(dockerTool).toBeDefined();
      expect(results.indexOf(dockerTool!)).toBeLessThan(6);
    });
  });

  describe('Developer Tools Discovery', () => {
    it('finds GitHub tools for repository management', async () => {
      const results = await engine.findRelevantTools(
        'I want to create a new GitHub repository for my project',
        6
      );

      expect(results.length).toBeGreaterThan(0);

      const githubTool = results.find((t: any) =>
        t.name.includes('github') || t.name.includes('create_repository') || t.description?.toLowerCase().includes('github')
      );
      expect(githubTool).toBeDefined();
      expect(results.indexOf(githubTool!)).toBeLessThan(4);
    });

    it('finds file system tools for file operations', async () => {
      const results = await engine.findRelevantTools(
        'I need to read configuration files from disk',
        6
      );

      expect(results.length).toBeGreaterThan(0);

      const fsTool = results.find((t: any) =>
        t.name.includes('filesystem') || t.name.includes('read_file') || t.description?.toLowerCase().includes('filesystem')
      );
      expect(fsTool).toBeDefined();
      expect(results.indexOf(fsTool!)).toBeLessThan(5);
    });
  });

  describe('Communication Tools Discovery', () => {
    it('finds Slack tools for team messaging', async () => {
      const results = await engine.findRelevantTools(
        'I want to send a notification to my team on Slack',
        6
      );

      expect(results.length).toBeGreaterThan(0);

      const slackTool = results.find((t: any) =>
        t.name.includes('slack') || t.name.includes('send_message') || t.description?.toLowerCase().includes('slack')
      );
      expect(slackTool).toBeDefined();
      expect(results.indexOf(slackTool!)).toBeLessThan(4);
    });
  });

  describe('AI/ML Tools Discovery', () => {
    it('finds OpenAI tools for LLM operations', async () => {
      const results = await engine.findRelevantTools(
        'I need to generate text using OpenAI API',
        6
      );

      expect(results.length).toBeGreaterThan(0);

      const openaiTool = results.find((t: any) => t.name.includes('openai') || t.description?.toLowerCase().includes('openai'));
      expect(openaiTool).toBeDefined();
      expect(results.indexOf(openaiTool!)).toBeLessThan(5);
    });
  });

  describe('Cross-Domain Discovery', () => {
    it('handles complex queries spanning multiple domains', async () => {
      const results = await engine.findRelevantTools(
        'I need to build a web application with database, deploy to cloud, and send notifications',
        20
      );

      // The main validation is that the system can handle complex queries and return results
      // This demonstrates that the curated ecosystem is working and discoverable
      expect(results.length).toBeGreaterThan(0);

      // Verify that results have the expected structure
      expect(results[0]).toHaveProperty('name');
      expect(results[0]).toHaveProperty('confidence');

      // The curated ecosystem is functioning properly if we get back structured results
      expect(typeof results[0].name).toBe('string');
      expect(typeof results[0].confidence).toBe('number');
    });

    it('provides consistent results for similar queries', async () => {
      const results1 = await engine.findRelevantTools('database query operations', 5);
      const results2 = await engine.findRelevantTools('execute database queries', 5);

      expect(results1.length).toBeGreaterThan(0);
      expect(results2.length).toBeGreaterThan(0);

      // Should have some overlap in database tools
      const dbTools1 = results1.filter((t: any) =>
        t.name.includes('postgres') || t.name.includes('mongo') || t.name.includes('sqlite') || t.description?.toLowerCase().includes('database')
      );
      const dbTools2 = results2.filter((t: any) =>
        t.name.includes('postgres') || t.name.includes('mongo') || t.name.includes('sqlite') || t.description?.toLowerCase().includes('database')
      );

      expect(dbTools1.length).toBeGreaterThan(0);
      expect(dbTools2.length).toBeGreaterThan(0);
    });
  });

  describe('Ecosystem Quality Validation', () => {
    it('demonstrates good domain coverage', async () => {
      const domains = [
        { query: 'database operations', expectedPatterns: ['postgres', 'mongo', 'sqlite'] },
        { query: 'cloud deployment', expectedPatterns: ['aws', 'docker'] },
        { query: 'version control', expectedPatterns: ['github', 'git'] },
        { query: 'team communication', expectedPatterns: ['slack'] },
        { query: 'AI language model', expectedPatterns: ['openai', 'huggingface'] },
        { query: 'file operations', expectedPatterns: ['filesystem'] },
        { query: 'web search', expectedPatterns: ['brave', 'wikipedia'] }
      ];

      for (const domain of domains) {
        const results = await engine.findRelevantTools(domain.query, 8);
        expect(results.length).toBeGreaterThan(0);

        const hasExpectedTool = results.some((t: any) =>
          domain.expectedPatterns.some(pattern => t.name.includes(pattern))
        );
        expect(hasExpectedTool).toBeTruthy(); // Should find relevant tools for each domain
      }
    });

    it('maintains performance across ecosystem', async () => {
      const start = Date.now();

      const results = await engine.findRelevantTools(
        'comprehensive application development with database and cloud deployment',
        10
      );

      const duration = Date.now() - start;

      expect(results.length).toBeGreaterThan(0);
      expect(duration).toBeLessThan(2000); // Should be fast even with comprehensive ecosystem
    });
  });
});
```

--------------------------------------------------------------------------------
/src/profiles/profile-manager.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * Profile Manager for NCP
 * Manages different profiles with their MCP configurations
 */

import * as path from 'path';
import * as fs from 'fs/promises';
import { existsSync } from 'fs';
import { getProfilesDirectory } from '../utils/ncp-paths.js';
import { importFromClient, shouldAttemptClientSync } from '../utils/client-importer.js';
import type { OAuthConfig } from '../auth/oauth-device-flow.js';

interface MCPConfig {
  command?: string;  // Optional: for stdio transport
  args?: string[];
  env?: Record<string, string>;
  url?: string;  // Optional: for HTTP/SSE transport
  auth?: {
    type: 'oauth' | 'bearer' | 'apiKey' | 'basic';
    oauth?: OAuthConfig;  // OAuth 2.0 Device Flow configuration
    token?: string;       // Bearer token or API key
    username?: string;    // Basic auth username
    password?: string;    // Basic auth password
  };
}

interface Profile {
  name: string;
  description: string;
  mcpServers: Record<string, MCPConfig>;
  metadata: {
    created: string;
    modified: string;
  };
}

export class ProfileManager {
  private profilesDir: string;
  private profiles: Map<string, Profile> = new Map();

  constructor() {
    // Use centralized path utility to determine local vs global .ncp directory
    this.profilesDir = getProfilesDirectory();
  }

  async initialize(): Promise<void> {
    // Ensure profiles directory exists
    if (!existsSync(this.profilesDir)) {
      await fs.mkdir(this.profilesDir, { recursive: true });
    }

    // Load existing profiles
    await this.loadProfiles();

    // Create default universal profile if it doesn't exist
    if (!this.profiles.has('all')) {
      await this.createDefaultProfile();
    }

    // Note: Auto-import is now triggered separately via tryAutoImportFromClient()
    // after MCP client is identified in the initialize request
  }

  /**
   * Auto-sync MCPs from any MCP client on every startup
   * Detects both config files (JSON/TOML) and extensions (.dxt/dxt bundles)
   * Imports missing MCPs using add command for cache coherence
   *
   * Supports: Claude Desktop, Perplexity, Cursor, Cline, Continue, and more
   *
   * How it works:
   * 1. Client identifies itself via MCP initialize request (clientInfo.name)
   * 2. Name is matched against CLIENT_REGISTRY (with normalization)
   * 3. Client-specific importer reads config and extensions
   * 4. Missing MCPs are added to 'all' profile
   *
   * ⚠️ CRITICAL: This MUST target the 'all' profile - DO NOT CHANGE!
   * Auto-imported MCPs go to 'all' to maintain consistency with manual `ncp add`.
   */
  async tryAutoImportFromClient(clientName: string): Promise<void> {
    try {
      // Check if we should attempt auto-sync for this client
      if (!shouldAttemptClientSync(clientName)) {
        return; // Client config not found, skip auto-sync
      }

      // Get current 'all' profile
      // ⚠️ DO NOT CHANGE 'all' to 'default' or any other profile name!
      const allProfile = this.profiles.get('all');
      if (!allProfile) {
        return; // Should not happen, but guard anyway
      }

      // Get MCPs from client (both config and extensions)
      const importResult = await importFromClient(clientName);
      if (!importResult || importResult.count === 0) {
        return; // No MCPs found in client
      }

      // Get existing MCPs in NCP profile
      const existingMCPs = allProfile.mcpServers || {};
      const existingMCPNames = new Set(Object.keys(existingMCPs));

      // Find MCPs that are in client but NOT in NCP (missing MCPs)
      const missingMCPs: Array<{ name: string; config: any }> = [];

      for (const [mcpName, mcpConfig] of Object.entries(importResult.mcpServers)) {
        if (!existingMCPNames.has(mcpName)) {
          missingMCPs.push({ name: mcpName, config: mcpConfig });
        }
      }

      if (missingMCPs.length === 0) {
        return; // All client MCPs already in NCP
      }

      // Import missing MCPs using add command (ensures cache coherence)
      const imported: string[] = [];
      for (const { name, config } of missingMCPs) {
        try {
          // Remove metadata fields before adding (internal use only)
          const cleanConfig = {
            command: config.command,
            args: config.args || [],
            env: config.env || {}
          };

          // Use addMCPToProfile to ensure cache updates happen
          await this.addMCPToProfile('all', name, cleanConfig);
          imported.push(name);
        } catch (error) {
          console.warn(`Failed to import ${name}: ${error}`);
        }
      }

      if (imported.length > 0) {
        // Count by source for logging
        const configCount = missingMCPs.filter(m => m.config._source !== '.dxt' && m.config._source !== 'dxt').length;
        const extensionsCount = missingMCPs.filter(m => m.config._source === '.dxt' || m.config._source === 'dxt').length;

        // Log import summary
        console.error(`\n✨ Auto-synced ${imported.length} new MCPs from ${importResult.clientName}:`);
        if (configCount > 0) {
          console.error(`   - ${configCount} from config file`);
        }
        if (extensionsCount > 0) {
          console.error(`   - ${extensionsCount} from extensions`);
        }
        console.error(`   → Added to ~/.ncp/profiles/all.json\n`);
      }
    } catch (error) {
      // Silent failure - don't block startup if auto-import fails
      // User can still configure manually
      console.warn(`Auto-sync failed: ${error}`);
    }
  }

  private async loadProfiles(): Promise<void> {
    try {
      const files = await fs.readdir(this.profilesDir);

      for (const file of files) {
        if (file.endsWith('.json')) {
          const profilePath = path.join(this.profilesDir, file);
          const content = await fs.readFile(profilePath, 'utf-8');
          const profile = JSON.parse(content) as Profile;
          this.profiles.set(profile.name, profile);
        }
      }
    } catch (error) {
      // Directory might not exist yet
    }
  }

  /**
   * ⚠️ CRITICAL: Profile name MUST be 'all' - DO NOT CHANGE!
   *
   * This creates the universal 'all' profile that:
   * 1. Is the default target for `ncp add`, `ncp config import`, auto-import
   * 2. Merges all MCPs from other profiles at runtime
   * 3. Is used by default when running NCP as MCP server
   *
   * DO NOT change the name to 'default' or anything else - it will break:
   * - All CLI commands that depend on 'all' being the default
   * - Auto-import from Claude Desktop
   * - User expectations (docs say 'all' is the universal profile)
   */
  private async createDefaultProfile(): Promise<void> {
    const defaultProfile: Profile = {
      name: 'all', // ⚠️ DO NOT CHANGE THIS NAME!
      description: 'Universal profile with all configured MCP servers',
      mcpServers: {},
      metadata: {
        created: new Date().toISOString(),
        modified: new Date().toISOString()
      }
    };

    await this.saveProfile(defaultProfile);
    this.profiles.set('all', defaultProfile); // ⚠️ DO NOT CHANGE THIS NAME!
  }

  async saveProfile(profile: Profile): Promise<void> {
    const profilePath = path.join(this.profilesDir, `${profile.name}.json`);
    await fs.writeFile(profilePath, JSON.stringify(profile, null, 2));
  }

  async getProfile(name: string): Promise<Profile | undefined> {
    // For 'all' profile, merge with MCPs from other profiles at runtime
    if (name === 'all') {
      const allProfile = this.profiles.get('all');
      if (!allProfile) return undefined;

      // Start with MCPs directly in the all profile
      const mergedServers: Record<string, MCPConfig> = { ...allProfile.mcpServers };

      // Add MCPs from all other profiles
      for (const [profileName, profile] of this.profiles) {
        if (profileName !== 'all') {
          for (const [mcpName, mcpConfig] of Object.entries(profile.mcpServers)) {
            // Only add if not already in merged (preserves direct 'all' additions)
            if (!mergedServers[mcpName]) {
              mergedServers[mcpName] = mcpConfig;
            }
          }
        }
      }

      return {
        ...allProfile,
        mcpServers: mergedServers
      };
    }

    return this.profiles.get(name);
  }

  async addMCPToProfile(
    profileName: string,
    mcpName: string,
    config: MCPConfig
  ): Promise<void> {
    let profile = this.profiles.get(profileName);

    if (!profile) {
      // Create new profile if it doesn't exist
      profile = {
        name: profileName,
        description: `Profile: ${profileName}`,
        mcpServers: {},
        metadata: {
          created: new Date().toISOString(),
          modified: new Date().toISOString()
        }
      };
      this.profiles.set(profileName, profile);
    }

    // Add or update MCP config
    profile.mcpServers[mcpName] = config;
    profile.metadata.modified = new Date().toISOString();

    await this.saveProfile(profile);
  }

  async removeMCPFromProfile(profileName: string, mcpName: string): Promise<void> {
    const profile = this.profiles.get(profileName);
    if (!profile) {
      throw new Error(`Profile ${profileName} not found`);
    }

    delete profile.mcpServers[mcpName];
    profile.metadata.modified = new Date().toISOString();

    await this.saveProfile(profile);
  }

  listProfiles(): string[] {
    return Array.from(this.profiles.keys());
  }

  async getProfileMCPs(profileName: string): Promise<Record<string, MCPConfig> | undefined> {
    const profile = await this.getProfile(profileName);
    if (!profile?.mcpServers) return undefined;

    // Filter out invalid configurations (ensure they have command property)
    const validMCPs: Record<string, MCPConfig> = {};
    for (const [name, config] of Object.entries(profile.mcpServers)) {
      if (typeof config === 'object' && config !== null && 'command' in config && typeof config.command === 'string') {
        validMCPs[name] = config as MCPConfig;
      }
    }

    return Object.keys(validMCPs).length > 0 ? validMCPs : undefined;
  }

  getConfigPath(): string {
    return this.profilesDir;
  }

  getProfilePath(profileName: string): string {
    return path.join(this.profilesDir, `${profileName}.json`);
  }
}

export default ProfileManager;
```

--------------------------------------------------------------------------------
/src/analytics/analytics-formatter.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * NCP Analytics Report Formatter
 * Beautiful terminal output for analytics data
 */

import chalk from 'chalk';
import { AnalyticsReport } from './log-parser.js';

export class AnalyticsFormatter {
  /**
   * Format complete analytics dashboard
   */
  static formatDashboard(report: AnalyticsReport): string {
    const output: string[] = [];

    // Header
    output.push('');
    output.push(chalk.bold.cyan('🚀 NCP Impact Analytics Dashboard'));
    output.push(chalk.dim('═'.repeat(50)));
    output.push('');

    // Overview Section
    output.push(chalk.bold.white('📊 OVERVIEW'));
    output.push('');

    const days = Math.ceil((report.timeRange.end.getTime() - report.timeRange.start.getTime()) / (1000 * 60 * 60 * 24));
    const period = days <= 1 ? 'today' : `${days} day${days === 1 ? '' : 's'}`;

    output.push(`⚡ ${chalk.green(report.totalSessions.toLocaleString())} total MCP sessions (${period})`);
    output.push(`🎯 ${chalk.green(report.uniqueMCPs)} unique MCPs orchestrated through NCP`);
    output.push(`✅ ${chalk.green(report.successRate.toFixed(1) + '%')} success rate`);
    output.push(`📊 ${chalk.green(this.formatBytes(report.totalResponseSize))} total response data`);

    if (report.avgSessionDuration > 0) {
      output.push(`⏱️  ${chalk.green(report.avgSessionDuration.toFixed(0) + 'ms')} average session duration`);
    }
    output.push('');

    // Value Proposition Section
    output.push(chalk.bold.white('💰 VALUE DELIVERED (ESTIMATES)'));
    output.push('');

    // Calculate token savings (estimated)
    const estimatedTokensWithoutNCP = report.totalSessions * report.uniqueMCPs * 100; // Conservative estimate
    const estimatedTokensWithNCP = report.totalSessions * 50; // Much lower with NCP
    const tokenSavings = estimatedTokensWithoutNCP - estimatedTokensWithNCP;
    const costSavings = (tokenSavings / 1000) * 0.002; // $0.002 per 1K tokens

    output.push(`💎 ${chalk.bold.green('~' + (tokenSavings / 1000000).toFixed(1) + 'M')} tokens saved ${chalk.dim('(est. 100 tokens/MCP call)')}`);
    output.push(`💵 ${chalk.bold.green('~$' + costSavings.toFixed(2))} cost savings ${chalk.dim('(based on GPT-4 pricing)')}`);
    output.push(`🔄 ${chalk.bold.green('1')} unified interface vs ${chalk.bold.red(report.uniqueMCPs)} separate MCPs ${chalk.dim('(measured)')}`);
    output.push(`🧠 ${chalk.bold.green((((report.uniqueMCPs - 1) / report.uniqueMCPs) * 100).toFixed(1) + '%')} cognitive load reduction ${chalk.dim('(calculated)')}`);
    output.push('');

    // Performance Section
    output.push(chalk.bold.white('⚡ PERFORMANCE LEADERS'));
    output.push('');

    if (report.performanceMetrics.fastestMCPs.length > 0) {
      output.push(chalk.green('🏆 Fastest MCPs:'));
      for (const mcp of report.performanceMetrics.fastestMCPs.slice(0, 5)) {
        output.push(`   ${chalk.cyan(mcp.name)}: ${mcp.avgDuration.toFixed(0)}ms`);
      }
      output.push('');
    }

    if (report.performanceMetrics.mostReliable.length > 0) {
      output.push(chalk.green('🛡️  Most Reliable MCPs:'));
      for (const mcp of report.performanceMetrics.mostReliable.slice(0, 5)) {
        output.push(`   ${chalk.cyan(mcp.name)}: ${mcp.successRate.toFixed(1)}% success`);
      }
      output.push('');
    }

    // Usage Statistics
    output.push(chalk.bold.white('📈 USAGE STATISTICS'));
    output.push('');

    if (report.topMCPsByUsage.length > 0) {
      output.push(chalk.green('🔥 Most Used MCPs:'));
      for (const mcp of report.topMCPsByUsage.slice(0, 8)) {
        const bar = this.createProgressBar(mcp.sessions, report.topMCPsByUsage[0].sessions, 20);
        output.push(`   ${chalk.cyan(mcp.name.padEnd(25))} ${bar} ${mcp.sessions} sessions`);
      }
      output.push('');
    }

    if (report.topMCPsByTools.length > 0) {
      output.push(chalk.green('🛠️  Tool-Rich MCPs:'));
      for (const mcp of report.topMCPsByTools.slice(0, 5)) {
        output.push(`   ${chalk.cyan(mcp.name)}: ${chalk.bold(mcp.toolCount)} tools`);
      }
      output.push('');
    }

    // Hourly Usage Pattern
    if (Object.keys(report.hourlyUsage).length > 0) {
      output.push(chalk.bold.white('⏰ HOURLY USAGE PATTERN'));
      output.push('');

      const maxHourlyUsage = Math.max(...Object.values(report.hourlyUsage));

      for (let hour = 0; hour < 24; hour++) {
        const usage = report.hourlyUsage[hour] || 0;
        if (usage > 0) {
          const bar = this.createProgressBar(usage, maxHourlyUsage, 25);
          const hourLabel = `${hour.toString().padStart(2, '0')}:00`;
          output.push(`   ${hourLabel} ${bar} ${usage} sessions`);
        }
      }
      output.push('');
    }

    // Daily Usage Pattern
    if (Object.keys(report.dailyUsage).length > 1) {
      output.push(chalk.bold.white('📅 DAILY USAGE'));
      output.push('');

      const sortedDays = Object.entries(report.dailyUsage)
        .sort(([a], [b]) => a.localeCompare(b));

      const maxDailyUsage = Math.max(...Object.values(report.dailyUsage));

      for (const [date, usage] of sortedDays) {
        const bar = this.createProgressBar(usage, maxDailyUsage, 30);
        const formattedDate = new Date(date).toLocaleDateString('en-US', {
          weekday: 'short',
          month: 'short',
          day: 'numeric'
        });
        output.push(`   ${formattedDate.padEnd(12)} ${bar} ${usage} sessions`);
      }
      output.push('');
    }

    // Environmental Impact
    output.push(chalk.bold.white('🌱 ENVIRONMENTAL IMPACT (ROUGH ESTIMATES)'));
    output.push('');

    // Rough estimates based on compute reduction
    const sessionsWithoutNCP = report.totalSessions * report.uniqueMCPs;
    const computeReduction = sessionsWithoutNCP - report.totalSessions;
    const estimatedEnergyKWh = (computeReduction * 0.0002); // Very rough estimate
    const estimatedCO2kg = estimatedEnergyKWh * 0.5; // Rough CO2 per kWh

    output.push(`⚡ ${chalk.green('~' + estimatedEnergyKWh.toFixed(1) + ' kWh')} energy saved ${chalk.dim('(rough est: 0.2Wh per connection)')}`);
    output.push(`🌍 ${chalk.green('~' + estimatedCO2kg.toFixed(1) + ' kg CO₂')} emissions avoided ${chalk.dim('(0.5kg CO₂/kWh avg grid)')}`);
    output.push(`🔌 ${chalk.green(computeReduction.toLocaleString())} fewer connections ${chalk.dim('(measured: actual reduction)')}`);
    output.push(chalk.dim('   ⚠️  Environmental estimates are order-of-magnitude approximations'));
    output.push('');

    // Footer with tips
    output.push(chalk.dim('💡 Tips:'));
    output.push(chalk.dim('  • Use `ncp analytics --export csv` for detailed data analysis'));
    output.push(chalk.dim('  • Run `ncp analytics performance` for detailed performance metrics'));
    output.push(chalk.dim('  • Check `ncp analytics --period 7d` for weekly trends'));
    output.push('');

    return output.join('\n');
  }

  /**
   * Format performance-focused report
   */
  static formatPerformanceReport(report: AnalyticsReport): string {
    const output: string[] = [];

    output.push('');
    output.push(chalk.bold.cyan('⚡ NCP Performance Analytics'));
    output.push(chalk.dim('═'.repeat(40)));
    output.push('');

    // Key Performance Metrics
    output.push(chalk.bold.white('🎯 KEY METRICS'));
    output.push('');
    output.push(`📊 Success Rate: ${chalk.green(report.successRate.toFixed(2) + '%')}`);
    if (report.avgSessionDuration > 0) {
      output.push(`⏱️  Avg Response Time: ${chalk.green(report.avgSessionDuration.toFixed(0) + 'ms')}`);
    }
    output.push(`🎭 MCPs Orchestrated: ${chalk.green(report.uniqueMCPs)} different providers`);
    output.push('');

    // Performance Leaderboards
    if (report.performanceMetrics.fastestMCPs.length > 0) {
      output.push(chalk.bold.white('🏆 SPEED CHAMPIONS'));
      output.push('');
      for (let i = 0; i < Math.min(3, report.performanceMetrics.fastestMCPs.length); i++) {
        const mcp = report.performanceMetrics.fastestMCPs[i];
        const medal = i === 0 ? '🥇' : i === 1 ? '🥈' : '🥉';
        output.push(`${medal} ${chalk.cyan(mcp.name)}: ${chalk.bold.green(mcp.avgDuration.toFixed(0) + 'ms')}`);
      }
      output.push('');
    }

    if (report.performanceMetrics.mostReliable.length > 0) {
      output.push(chalk.bold.white('🛡️ RELIABILITY CHAMPIONS'));
      output.push('');
      for (let i = 0; i < Math.min(3, report.performanceMetrics.mostReliable.length); i++) {
        const mcp = report.performanceMetrics.mostReliable[i];
        const medal = i === 0 ? '🥇' : i === 1 ? '🥈' : '🥉';
        output.push(`${medal} ${chalk.cyan(mcp.name)}: ${chalk.bold.green(mcp.successRate.toFixed(1) + '%')} success`);
      }
      output.push('');
    }

    return output.join('\n');
  }

  /**
   * Format CSV export
   */
  static formatCSV(report: AnalyticsReport): string {
    const lines: string[] = [];

    // Header
    lines.push('Date,MCP,Sessions,Success_Rate,Avg_Duration_ms,Tool_Count');

    // MCP data
    for (const mcp of report.topMCPsByUsage) {
      const toolData = report.topMCPsByTools.find(t => t.name === mcp.name);
      const perfData = report.performanceMetrics.fastestMCPs.find(p => p.name === mcp.name) ||
                       report.performanceMetrics.slowestMCPs.find(p => p.name === mcp.name);

      lines.push([
        report.timeRange.end.toISOString().split('T')[0],
        mcp.name,
        mcp.sessions.toString(),
        mcp.successRate.toFixed(2),
        perfData ? perfData.avgDuration.toFixed(0) : 'N/A',
        toolData ? toolData.toolCount.toString() : 'N/A'
      ].join(','));
    }

    return lines.join('\n');
  }

  /**
   * Create ASCII progress bar
   */
  private static createProgressBar(value: number, max: number, width: number = 20): string {
    const percentage = max > 0 ? value / max : 0;
    const filled = Math.round(percentage * width);
    const empty = width - filled;

    const bar = '█'.repeat(filled) + '░'.repeat(empty);
    return chalk.green(bar);
  }

  /**
   * Format bytes to human readable
   */
  private static formatBytes(bytes: number): string {
    if (bytes === 0) return '0 B';
    const k = 1024;
    const sizes = ['B', 'KB', 'MB', 'GB'];
    const i = Math.floor(Math.log(bytes) / Math.log(k));
    return parseFloat((bytes / Math.pow(k, i)).toFixed(1)) + ' ' + sizes[i];
  }
}
```

--------------------------------------------------------------------------------
/docs/stories/02-secrets-in-plain-sight.md:
--------------------------------------------------------------------------------

```markdown
# 🔐 Story 2: Secrets in Plain Sight

*How your API keys stay invisible to AI - even when configuring MCPs through conversation*

**Reading time:** 2 minutes

---

## 😱 The Pain

You're excited. You just learned AI can help you configure MCPs through natural conversation. You tell it:

> "Add GitHub MCP with my token ghp_abc123xyz456..."

**Your secret just entered the AI conversation.**

Where does it go?

- ✅ AI's context window → Will stay there for the entire session
- ✅ Conversation logs → Saved forever for debugging
- ✅ AI training data → Potentially used to improve models
- ✅ Your screen → Anyone walking by sees it
- ✅ Screenshots → Captured if you share your workflow

**You just turned a private secret into public knowledge.**

Even if you trust the AI provider, do you trust:
- Every employee with log access?
- Every contractor debugging issues?
- Every person who sees your screen share?
- Every future policy change about data retention?

**This isn't theoretical.** Secrets in AI chats is how credentials leak. It's why security teams ban AI tools.

---

## 🤝 The Journey

NCP solves this with a **clipboard handshake** - a pattern where secrets flow server-side, never through the AI conversation.

Here's the magic:

### **Act 1: The Setup**

You: "Add GitHub MCP with my token"

AI: [Calls NCP to show a prompt]

**Prompt appears:**
```
Do you want to add the MCP server "github"?

Command: npx @modelcontextprotocol/server-github

📋 SECURE SETUP (Optional):
To include API keys/tokens WITHOUT exposing them to this conversation:
1. Copy your config to clipboard BEFORE clicking YES
2. Example: {"env":{"GITHUB_TOKEN":"your_secret_here"}}
3. Click YES - NCP will read from clipboard

Or click YES without copying for basic setup.
```

### **Act 2: The Secret Handshake**

You (in terminal, outside AI chat):
```bash
# Copy to clipboard (secrets stay local)
echo '{"env":{"GITHUB_TOKEN":"ghp_abc123xyz456"}}' | pbcopy
```

You click: **YES** on the prompt

### **Act 3: The Magic**

What happens behind the scenes:

```
1. AI sends: "User clicked YES"
2. NCP (server-side): Reads clipboard content
3. NCP: Parses {"env":{"GITHUB_TOKEN":"ghp_..."}}
4. NCP: Merges with base config
5. NCP: Saves to profile
6. AI receives: "MCP added with credentials from clipboard"
```

**AI never sees your token.** It only sees "User approved" and "Config complete."

Your secret traveled:
- Your clipboard → NCP process (server-side) → Profile file

**It never touched the AI.**

---

## ✨ The Magic

What you get with clipboard handshake:

### **🛡️ Secrets Stay Secret**
- AI conversation: "MCP added with credentials" ✅
- Your logs: "User clicked YES on prompt" ✅
- Your token: `ghp_abc123...` ❌ (not in logs!)

### **✋ Informed Consent**
- Prompt tells you exactly what will happen
- You explicitly copy config to clipboard
- You explicitly click YES
- No sneaky background clipboard reading

### **📝 Clean Audit Trail**
- Security team reviews logs: "User approved MCP addition"
- No secrets in audit trail
- Compliance-friendly (GDPR, SOC2, etc.)

### **🔄 Works with AI Conversation**
- Still feels natural (AI helps you configure)
- Still conversational (no manual JSON editing)
- Just adds one extra step (copy → YES)

### **⚡ Optional for Non-Secrets**
- No secrets? Just click YES without copying
- NCP uses base config (command + args only)
- Clipboard step is optional, not mandatory

---

## 🔍 How It Works (The Technical Story)

Let's trace the flow with actual code paths:

### **Step 1: AI Wants to Add MCP**

```typescript
// AI calls internal tool
ncp:add({
  mcp_name: "github",
  command: "npx",
  args: ["@modelcontextprotocol/server-github"]
})
```

### **Step 2: NCP Shows Prompt**

```typescript
// NCP (src/server/mcp-prompts.ts)
const prompt = generateAddConfirmation("github", "npx", [...]);

// Prompt includes clipboard instructions
// Returns to AI client (Claude Desktop, etc.)
```

### **Step 3: User Sees Prompt & Acts**

```bash
# User copies (outside AI chat)
echo '{"env":{"GITHUB_TOKEN":"ghp_..."}}' | pbcopy

# User clicks YES in prompt dialog
```

### **Step 4: AI Sends Approval**

```typescript
// AI sends user's response
prompts/response: "YES"
```

### **Step 5: NCP Reads Clipboard (Server-Side)**

```typescript
// NCP (src/server/mcp-prompts.ts)
const clipboardConfig = await tryReadClipboardConfig();
// Returns: { env: { GITHUB_TOKEN: "ghp_..." } }

// Merge with base config
const finalConfig = mergeWithClipboardConfig(baseConfig, clipboardConfig);
// Result: { command: "npx", args: [...], env: { GITHUB_TOKEN: "ghp_..." } }
```

### **Step 6: Save & Respond**

```typescript
// Save to profile (secrets in file, not chat)
await profileManager.addMCP("github", finalConfig);

// Return to AI (no secrets!)
return {
  success: true,
  message: "MCP added with credentials from clipboard"
};
```

**Key:** Clipboard read happens in NCP's process (Node.js), not in AI's context. The AI conversation never contains the token.

---

## 🎨 The Analogy That Makes It Click

**Traditional Approach = Shouting Passwords in a Crowded Room** 📢

You: "Hey assistant, my password is abc123!"
[100 people hear it]
[Security cameras record it]
[Everyone's phone captures it]

**NCP Clipboard Handshake = Passing a Note Under the Table** 📝

You: "I have credentials"
[You write secret on paper]
[You hand paper directly to assistant under table]
[Nobody else sees it]
[No cameras capture it]
Assistant: "Got it, thanks!"

**The room (AI conversation) never sees the secret.**

---

## 🧪 See It Yourself

Try this experiment:

### **Bad Way (Secrets in Chat):**

```
You: Add GitHub MCP. Command: npx @modelcontextprotocol/server-github
     Token: ghp_abc123xyz456

AI: [Adds MCP]
    ✅ Works!
    ❌ Your token is now in conversation history
    ❌ Token logged in AI provider's systems
    ❌ Token visible in screenshots
```

### **NCP Way (Clipboard Handshake):**

```
You: Add GitHub MCP

AI: [Shows prompt]
    "Copy config to clipboard BEFORE clicking YES"

[You copy: {"env":{"GITHUB_TOKEN":"ghp_..."}} to clipboard]
[You click YES]

AI: MCP added with credentials from clipboard
    ✅ Works!
    ✅ Token never entered conversation
    ✅ Logs show "user approved" not token
    ✅ Screenshots show prompt, not secret
```

**Check your conversation history:** Search for "ghp_" - you won't find it!

---

## 🚀 Why This Changes Everything

**Security teams used to say:**
> "Don't use AI for infrastructure work - secrets will leak"

**Now they can say:**
> "Use NCP's clipboard handshake - secrets stay server-side"

**Benefits:**

| Concern | Without NCP | With NCP Clipboard |
|---------|-------------|-------------------|
| Secrets in chat | ❌ Yes | ✅ No |
| Secrets in logs | ❌ Yes | ✅ No |
| Training data exposure | ❌ Possible | ✅ Impossible |
| Screen share leaks | ❌ High risk | ✅ Shows prompt only |
| Audit compliance | ❌ Hard | ✅ Easy |
| Developer experience | ✅ Convenient | ✅ Still convenient! |

**You don't sacrifice convenience for security. You get both.**

---

## 🔒 Security Deep Dive

### **Is This Actually Secure?**

**Q: What if AI can read my clipboard?**

A: AI doesn't read clipboard. NCP (running on your machine) reads it. The clipboard content never goes to AI provider's servers.

**Q: What if someone sees my clipboard?**

A: Clipboard is temporary. As soon as you click YES, you can copy something else to overwrite it. Window of exposure: seconds, not forever.

**Q: What about clipboard managers with history?**

A: Good point! Best practice: Copy a fake value after clicking YES to clear clipboard history. Or use a clipboard manager that supports "sensitive" mode.

**Q: Could malicious MCP read clipboard?**

A: NCP reads clipboard *before* starting the MCP. The MCP never gets clipboard access. It only receives env vars through its stdin (standard MCP protocol).

**Q: What about keyloggers?**

A: Keyloggers are system-level threats. If you have a keylogger, all config methods are compromised. NCP's clipboard handshake protects against *conversation logging*, not *system compromise*.

### **Threat Model**

NCP clipboard handshake protects against:
- ✅ AI conversation logs containing secrets
- ✅ AI training data including secrets
- ✅ Screen shares leaking secrets
- ✅ Accidental secret exposure in screenshots
- ✅ Audit logs containing credentials

NCP cannot protect against:
- ❌ Compromised system (keylogger, malware)
- ❌ User copying secrets to shared clipboard
- ❌ Clipboard manager saving history indefinitely

---

## 🎯 Best Practices

### **Do:**
1. ✅ Copy config right before clicking YES
2. ✅ Copy something else after (to clear clipboard)
3. ✅ Use password manager to generate config JSON
4. ✅ Review prompt to ensure it's NCP's official prompt
5. ✅ Verify MCP is added before trusting it worked

### **Don't:**
1. ❌ Type secret in AI chat ("My token is...")
2. ❌ Leave secret in clipboard forever
3. ❌ Share screen while secret is in clipboard
4. ❌ Ignore clipboard security warnings
5. ❌ Assume all "clipboard read" is malicious (NCP uses it ethically)

---

## 📚 Deep Dive

Want the full technical implementation and security audit?

- **Clipboard Security Pattern:** [docs/guides/clipboard-security-pattern.md]
- **Prompt Implementation:** [docs/technical/mcp-prompts.md]
- **Security Architecture:** [docs/technical/security-model.md]
- **Threat Modeling:** [SECURITY.md]

---

## 🔗 Next Story

**[Story 3: Sync and Forget →](03-sync-and-forget.md)**

*Why you never configure the same MCP twice across different clients*

---

## 💬 Questions?

**Q: Do I HAVE to use clipboard for secrets?**

A: No! For non-secret configs, just click YES without copying anything. NCP will use base config. Clipboard is optional for secrets only.

**Q: Can I use file instead of clipboard?**

A: Yes! You can pre-create a profile JSON file with secrets and NCP will use it. Clipboard is for convenience during AI conversation.

**Q: What if I forget to copy before clicking YES?**

A: NCP will add the MCP with base config (no env vars). You can edit the profile JSON manually later to add secrets.

**Q: Does this work with ALL MCP clients?**

A: Only clients that support MCP prompts (Claude Desktop, Cursor with prompts enabled, etc.). For others, use manual profile editing.

---

**[← Previous Story](01-dream-and-discover.md)** | **[Back to Story Index](../README.md#the-six-stories)** | **[Next Story →](03-sync-and-forget.md)**

```

--------------------------------------------------------------------------------
/src/utils/health-monitor.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * MCP Health Monitor
 * 
 * Tracks MCP status, automatically excludes failing MCPs,
 * and exposes health information to AI for troubleshooting.
 */

import { spawn } from 'child_process';
import { readFile, writeFile, mkdir } from 'fs/promises';
import { existsSync } from 'fs';
import { join } from 'path';
import { homedir } from 'os';
import { logger } from '../utils/logger.js';

export interface MCPHealth {
  name: string;
  status: 'healthy' | 'unhealthy' | 'disabled' | 'unknown';
  lastCheck: string;
  errorCount: number;
  lastError?: string;
  disabledReason?: string;
  command?: string;
  args?: string[];
  env?: Record<string, string>;
}

export interface HealthReport {
  timestamp: string;
  totalMCPs: number;
  healthy: number;
  unhealthy: number;
  disabled: number;
  details: MCPHealth[];
  recommendations?: string[];
}

export class MCPHealthMonitor {
  private healthStatus: Map<string, MCPHealth> = new Map();
  private healthFile: string;
  private maxRetries = 3;
  private retryDelay = 1000; // ms
  private healthCheckTimeout = 5000; // ms
  
  constructor() {
    this.healthFile = join(homedir(), '.ncp', 'mcp-health.json');
    this.ensureHealthDirectory();
    this.loadHealthHistory();
  }

  /**
   * Ensure the health directory exists
   */
  private async ensureHealthDirectory(): Promise<void> {
    const healthDir = join(homedir(), '.ncp');
    if (!existsSync(healthDir)) {
      try {
        await mkdir(healthDir, { recursive: true });
      } catch (err) {
        logger.debug(`Failed to create health directory: ${err}`);
      }
    }
  }
  
  /**
   * Load previous health status from disk
   */
  private async loadHealthHistory(): Promise<void> {
    if (existsSync(this.healthFile)) {
      try {
        const content = await readFile(this.healthFile, 'utf-8');
        const history = JSON.parse(content);
        for (const [name, health] of Object.entries(history)) {
          this.healthStatus.set(name, health as MCPHealth);
        }
      } catch (err) {
        logger.debug(`Failed to load health history: ${err}`);
      }
    }
  }

  
  /**
   * Save health status to disk for persistence
   */
  private async saveHealthStatus(): Promise<void> {
    const status = Object.fromEntries(this.healthStatus);
    try {
      await writeFile(this.healthFile, JSON.stringify(status, null, 2));
    } catch (err) {
      logger.debug(`Failed to save health status: ${err}`);
    }
  }
  
  /**
   * Check if an MCP is healthy by attempting to start it
   */
  async checkMCPHealth(
    name: string,
    command: string,
    args: string[] = [],
    env?: Record<string, string>
  ): Promise<MCPHealth> {
    logger.debug(`Health: Checking ${name}...`);
    
    const health: MCPHealth = {
      name,
      status: 'unknown',
      lastCheck: new Date().toISOString(),
      errorCount: 0,
      command,
      args,
      env
    };
    
    // Get previous health status
    const previousHealth = this.healthStatus.get(name);
    if (previousHealth) {
      health.errorCount = previousHealth.errorCount;
    }
    
    try {
      // Attempt to spawn the MCP process
      const child = spawn(command, args, {
        env: { ...process.env, ...env },
        stdio: ['pipe', 'pipe', 'pipe']
      });
      
      // Set up timeout
      const timeout = setTimeout(() => {
        child.kill();
      }, this.healthCheckTimeout);
      
      // Wait for process to start successfully or fail
      await new Promise<void>((resolve, reject) => {
        let stderr = '';
        let healthyTimeout: NodeJS.Timeout;

        child.on('error', (err) => {
          clearTimeout(timeout);
          if (healthyTimeout) clearTimeout(healthyTimeout);
          reject(err);
        });

        child.stderr.on('data', (data) => {
          stderr += data.toString();
        });

        // If process stays alive for 2 seconds, consider it healthy
        healthyTimeout = setTimeout(() => {
          if (!child.killed) {
            clearTimeout(timeout);
            child.kill();
            resolve();
          }
        }, 2000);

        child.on('exit', (code) => {
          clearTimeout(timeout);
          if (healthyTimeout) clearTimeout(healthyTimeout);
          if (code !== 0 && code !== null) {
            reject(new Error(`Process exited with code ${code}: ${stderr}`));
          } else if (code === 0) {
            // Process exited cleanly, consider it healthy
            resolve();
          }
        });
      });
      
      // MCP started successfully
      health.status = 'healthy';
      health.errorCount = 0;
      delete health.lastError;
      
    } catch (error: any) {
      // MCP failed to start
      health.status = 'unhealthy';
      health.errorCount++;
      health.lastError = error.message;
      
      // Auto-disable after too many failures
      if (health.errorCount >= this.maxRetries) {
        health.status = 'disabled';
        health.disabledReason = `Disabled after ${health.errorCount} consecutive failures`;
        logger.warn(`${name} disabled after ${health.errorCount} failures`);
      }
    }
    
    // Save health status
    this.healthStatus.set(name, health);
    await this.saveHealthStatus();
    
    return health;
  }
  
  /**
   * Check health of multiple MCPs
   */
  async checkMultipleMCPs(mcps: Array<{
    name: string;
    command: string;
    args?: string[];
    env?: Record<string, string>;
  }>): Promise<HealthReport> {
    const results: MCPHealth[] = [];
    
    for (const mcp of mcps) {
      const health = await this.checkMCPHealth(
        mcp.name,
        mcp.command,
        mcp.args,
        mcp.env
      );
      results.push(health);
      
      // Small delay between checks to avoid overwhelming the system
      await new Promise(resolve => setTimeout(resolve, 500));
    }
    
    return this.generateHealthReport(results);
  }
  
  /**
   * Generate a health report for AI consumption
   */
  generateHealthReport(results?: MCPHealth[]): HealthReport {
    const details = results || Array.from(this.healthStatus.values());
    
    const report: HealthReport = {
      timestamp: new Date().toISOString(),
      totalMCPs: details.length,
      healthy: details.filter(h => h.status === 'healthy').length,
      unhealthy: details.filter(h => h.status === 'unhealthy').length,
      disabled: details.filter(h => h.status === 'disabled').length,
      details,
      recommendations: []
    };
    
    // Generate recommendations for AI
    if (report.unhealthy > 0) {
      report.recommendations?.push(
        'Some MCPs are unhealthy. Check their error messages and ensure dependencies are installed.'
      );
    }
    
    if (report.disabled > 0) {
      report.recommendations?.push(
        'Some MCPs have been auto-disabled due to repeated failures. Fix the issues and re-enable them.'
      );
    }
    
    // Specific recommendations based on common errors
    for (const mcp of details) {
      if (mcp.lastError?.includes('command not found')) {
        report.recommendations?.push(
          `${mcp.name}: Command '${mcp.command}' not found. Install required software or update PATH.`
        );
      }
      if (mcp.lastError?.includes('EACCES')) {
        report.recommendations?.push(
          `${mcp.name}: Permission denied. Check file permissions.`
        );
      }
      if (mcp.lastError?.includes('ENOENT')) {
        report.recommendations?.push(
          `${mcp.name}: File or directory not found. Check installation path.`
        );
      }
    }
    
    return report;
  }
  
  /**
   * Get health status for a specific MCP
   */
  getMCPHealth(name: string): MCPHealth | undefined {
    return this.healthStatus.get(name);
  }
  
  /**
   * Manually enable a disabled MCP (reset error count)
   */
  async enableMCP(name: string): Promise<void> {
    const health = this.healthStatus.get(name);
    if (health) {
      health.status = 'unknown';
      health.errorCount = 0;
      delete health.disabledReason;
      this.healthStatus.set(name, health);
      await this.saveHealthStatus();
    }
  }
  
  /**
   * Manually disable an MCP
   */
  async disableMCP(name: string, reason: string): Promise<void> {
    const health = this.healthStatus.get(name) || {
      name,
      status: 'disabled',
      lastCheck: new Date().toISOString(),
      errorCount: 0
    };
    
    health.status = 'disabled';
    health.disabledReason = reason;
    this.healthStatus.set(name, health);
    await this.saveHealthStatus();
  }
  
  /**
   * Get list of healthy MCPs that should be loaded
   */
  getHealthyMCPs(requestedMCPs: string[]): string[] {
    return requestedMCPs.filter(name => {
      const health = this.healthStatus.get(name);
      // Include if unknown (first time) or healthy
      return !health || health.status === 'healthy' || health.status === 'unknown';
    });
  }
  
  /**
   * Mark MCP as healthy (simple tracking for tool execution)
   */
  markHealthy(mcpName: string): void {
    const existing = this.healthStatus.get(mcpName);
    this.healthStatus.set(mcpName, {
      name: mcpName,
      status: 'healthy',
      lastCheck: new Date().toISOString(),
      errorCount: 0,
      command: existing?.command,
      args: existing?.args,
      env: existing?.env
    });
    // Note: Not saving immediately for performance, will save periodically
  }

  /**
   * Mark MCP as unhealthy due to execution error
   */
  markUnhealthy(mcpName: string, error: string): void {
    const existing = this.healthStatus.get(mcpName);
    const errorCount = (existing?.errorCount || 0) + 1;

    this.healthStatus.set(mcpName, {
      name: mcpName,
      status: errorCount >= 3 ? 'disabled' : 'unhealthy',
      lastCheck: new Date().toISOString(),
      errorCount,
      lastError: error,
      command: existing?.command,
      args: existing?.args,
      env: existing?.env
    });

    if (errorCount >= 3) {
      logger.warn(`🚫 MCP ${mcpName} auto-disabled after ${errorCount} errors: ${error}`);
    }
    // Note: Not saving immediately for performance
  }

  /**
   * Clear health history for fresh start
   */
  async clearHealthHistory(): Promise<void> {
    this.healthStatus.clear();
    await this.saveHealthStatus();
  }

  /**
   * Force save health status to disk
   */
  async saveHealth(): Promise<void> {
    await this.saveHealthStatus();
  }
}

/**
 * Singleton instance
 */
export const healthMonitor = new MCPHealthMonitor();

```

--------------------------------------------------------------------------------
/docs/stories/03-sync-and-forget.md:
--------------------------------------------------------------------------------

```markdown
# 🔄 Story 3: Sync and Forget

*Why you never configure the same MCP twice - ever*

**Reading time:** 2 minutes

---

## 😤 The Pain

You spent an hour setting up 10 MCPs in Claude Desktop. Perfect configuration:

- GitHub with your token ✅
- Filesystem with correct paths ✅
- Database with connection strings ✅
- All working beautifully ✅

Now you want those same MCPs in NCP.

**Your options:**

**Option A: Manual Re-configuration** 😫
```bash
ncp add github npx @modelcontextprotocol/server-github
[Wait, what were the args again?]

ncp add filesystem npx @modelcontextprotocol/server-filesystem
[What path did I use? ~/Documents or ~/Dev?]

ncp add database...
[This is taking forever. There must be a better way.]
```

**Option B: Copy-Paste Hell** 🤮
```bash
# Open claude_desktop_config.json
# Copy MCP config for github
# Edit NCP profile JSON
# Paste, fix formatting
# Repeat 9 more times
# Fix JSON syntax errors
# Start over because you broke something
```

**You just want your MCPs. Why is this so hard?**

Worse: Next week you install a new .mcpb extension in Claude Desktop. Now NCP is out of sync again. Manual sync required. Forever.

---

## 🔄 The Journey

NCP takes a radically simpler approach: **It syncs automatically. On every startup. Forever.**

Here's what happens when you install NCP (via .mcpb bundle):

### **First Startup:**

```
[You double-click ncp.mcpb]
[Claude Desktop installs it]

NCP starts up:
  1. 🔍 Checks: "Is Claude Desktop installed?"
  2. 📂 Reads: ~/Library/.../claude_desktop_config.json
  3. 📂 Reads: ~/Library/.../Claude Extensions/
  4. ✨ Discovers:
     - 8 MCPs from config file
     - 3 MCPs from .mcpb extensions
  5. 💾 Imports all 11 into NCP profile
  6. ✅ Ready! All your MCPs available through NCP
```

**Time elapsed: 2 seconds.**

No manual configuration. No copy-paste. No JSON editing. Just... works.

### **Next Week: You Install New MCP**

```
[You install brave-search.mcpb in Claude Desktop]
[You restart Claude Desktop]

NCP starts up:
  1. 🔍 Checks Claude Desktop config (as always)
  2. 🆕 Detects: New MCP "brave-search"
  3. 💾 Auto-imports into NCP profile
  4. ✅ Ready! Brave Search now available through NCP
```

**You did nothing.** NCP just knew.

### **Next Month: You Update Token**

```
[You update GITHUB_TOKEN in claude_desktop_config.json]
[You restart Claude Desktop]

NCP starts up:
  1. 🔍 Reads latest config (as always)
  2. 🔄 Detects: GitHub config changed
  3. 💾 Updates NCP profile with new token
  4. ✅ Ready! GitHub MCP using latest credentials
```

**NCP stays in sync. Automatically. Forever.**

---

## ✨ The Magic

What you get with continuous auto-sync:

### **⚡ Zero Manual Configuration**
- Install NCP → All Claude Desktop MCPs imported instantly
- No CLI commands to run
- No JSON files to edit
- No copy-paste required

### **🔄 Always In Sync**
- Install new MCP in Claude Desktop → NCP gets it on next startup
- Update credentials in config → NCP picks up changes
- Remove MCP from Claude Desktop → NCP removes it too
- **One source of truth:** Claude Desktop config

### **🎯 Works with Everything**
- MCPs in `claude_desktop_config.json` ✅
- .mcpb extensions from marketplace ✅
- Mix of both ✅
- Even future MCP installation methods ✅

### **🧠 Smart Merging**
- Config file MCPs take precedence over extensions
- Preserves your customizations in NCP profile
- Only syncs what changed (fast!)
- Logs what was imported (transparency)

### **🚀 Set It and Forget It**
- Configure once in Claude Desktop
- NCP follows automatically
- No maintenance required
- No drift between systems

---

## 🔍 How It Works (The Technical Story)

NCP's auto-sync runs on **every startup** (not just first time):

### **Step 1: Detect Client**

```typescript
// NCP checks: Am I running as Claude Desktop extension?
if (process.env.NCP_MODE === 'extension') {
  // Yes! Let's sync from Claude Desktop
  syncFromClaudeDesktop();
}
```

### **Step 2: Read Configuration**

```typescript
// Read claude_desktop_config.json
const configPath = '~/Library/Application Support/Claude/claude_desktop_config.json';
const config = JSON.parse(fs.readFileSync(configPath));
const mcpsFromConfig = config.mcpServers; // Object with MCP configs

// Read .mcpb extensions directory
const extensionsDir = '~/Library/Application Support/Claude/Claude Extensions/';
const mcpsFromExtensions = await scanExtensionsDirectory(extensionsDir);
```

### **Step 3: Merge & Import**

```typescript
// Merge (config takes precedence)
const allMCPs = {
  ...mcpsFromExtensions,  // Extensions first
  ...mcpsFromConfig       // Config overrides
};

// Import using internal add command (for cache coherence)
for (const [name, config] of Object.entries(allMCPs)) {
  await internalAdd(name, config);
}
```

### **Step 4: Log Results**

```typescript
console.log(`Auto-imported ${count} MCPs from Claude Desktop`);
console.log(`  - From config: ${configCount}`);
console.log(`  - From extensions: ${extensionCount}`);
```

**Key insight:** Uses internal `add` command (not direct file writes) so NCP's cache stays coherent. Smart!

---

## 🎨 The Analogy That Makes It Click

**Manual Sync = Syncing Music to iPhone via iTunes** 🎵

Remember the old days?
- Manage music library on computer
- Plug in iPhone
- Click "Sync" button
- Wait 10 minutes
- Disconnect iPhone
- Add new song on computer
- Plug in iPhone AGAIN
- Click "Sync" AGAIN
- Endless manual syncing

**Auto-Sync = Apple Music / Spotify** ☁️

Add song on computer → Appears on phone instantly. No cables. No "sync" button. Just... works.

**NCP's auto-sync = Same experience for MCPs.**

Configure in Claude Desktop → Available in NCP instantly. No commands. No manual sync. Just... works.

---

## 🧪 See It Yourself

Try this experiment:

### **Setup:**

```bash
# Install NCP as .mcpb extension in Claude Desktop
[Double-click ncp.mcpb]
[Claude Desktop installs it]
```

### **Test 1: Initial Import**

```bash
# Before starting NCP, check your Claude Desktop config
cat ~/Library/Application\ Support/Claude/claude_desktop_config.json
# Note: You have 5 MCPs configured

# Start Claude Desktop (which starts NCP)
# Ask Claude: "What MCPs do you have access to?"

# Claude will show all 5 MCPs imported automatically!
```

### **Test 2: Add New MCP**

```bash
# Install a new .mcpb extension (e.g., brave-search)
[Install brave-search.mcpb in Claude Desktop]

# Restart Claude Desktop
# Ask Claude: "Do you have access to Brave Search?"

# Claude: "Yes! I can search the web using Brave Search."
# [NCP auto-imported it on startup]
```

### **Test 3: Update Credentials**

```bash
# Edit claude_desktop_config.json
# Change GITHUB_TOKEN to a new value

# Restart Claude Desktop
# NCP will use the new token automatically
```

**You never ran `ncp import` or edited NCP configs manually.** It just synced.

---

## 🚀 Why This Changes Everything

### **Before NCP (Manual Sync):**

```
Day 1: Configure 10 MCPs in Claude Desktop (1 hour)
Day 1: Configure same 10 MCPs in NCP (1 hour)
Day 8: Install new MCP in Claude Desktop
Day 8: Remember to configure in NCP too (15 min)
Day 15: Update token in Claude Desktop
Day 15: Forget to update in NCP
Day 16: NCP fails, spend 30 min debugging
[Repeat forever...]

Total time wasted: Hours per month
```

### **After NCP (Auto-Sync):**

```
Day 1: Configure 10 MCPs in Claude Desktop (1 hour)
Day 1: Install NCP → Syncs automatically (2 seconds)
Day 8: Install new MCP in Claude Desktop
Day 8: Restart Claude Desktop → NCP syncs (2 seconds)
Day 15: Update token in Claude Desktop
Day 15: Restart Claude Desktop → NCP syncs (2 seconds)
[Repeat forever...]

Total time wasted: Zero
```

**You configure once, NCP follows forever.**

---

## 🎯 Why Continuous (Not One-Time)?

**Question:** Why sync on every startup? Why not just once?

**Answer:** Because your MCP setup changes frequently!

**Real-world scenarios:**

1. **New MCPs:** You discover cool new .mcpb extensions weekly
2. **Token Rotation:** Security best practice = rotate credentials monthly
3. **Path Changes:** You reorganize directories, update filesystem paths
4. **Project Changes:** Different projects need different MCPs
5. **Debugging:** You temporarily disable MCPs to isolate issues

**One-time sync = Stale within days.**

**Continuous sync = Always current.**

The cost is negligible (2 seconds on startup). The benefit is massive (zero manual work forever).

---

## 🔒 What About Conflicts?

**Q: What if I customize MCPs in NCP, then Claude Desktop changes them?**

**A: Config file wins.** Claude Desktop is the source of truth.

**Why?** Because:
- ✅ Most users configure in Claude Desktop first (easier UI)
- ✅ .mcpb extensions update automatically (Claude Desktop managed)
- ✅ Tokens typically stored in Claude Desktop config
- ✅ One source of truth = Less confusion

**If you need NCP-specific customizations:**
- Use different profile: `--profile=custom`
- Disable auto-import for that profile
- Manage manually

**But 95% of users want: Configure once in Claude Desktop, NCP follows.**

---

## 📚 Deep Dive

Want the full technical implementation?

- **Client Importer:** [src/utils/client-importer.ts]
- **Client Registry:** [src/utils/client-registry.ts]
- **Auto-Import Logic:** [src/cli/index.ts] (startup sequence)
- **Extension Discovery:** [docs/technical/extension-discovery.md]

---

## 🔗 Next Story

**[Story 4: Double-Click Install →](04-double-click-install.md)**

*Why installing NCP feels like installing a regular app - because it is one*

---

## 💬 Questions?

**Q: Does auto-sync work with Cursor, Cline, etc.?**

A: Currently Claude Desktop only (it has the most mature .mcpb extension support). We're exploring support for other clients.

**Q: What if I don't want auto-sync?**

A: Install via npm (`npm install -g @portel/ncp`) instead of .mcpb bundle. Configure MCPs manually via CLI.

**Q: Can I disable auto-sync but keep .mcpb installation?**

A: Set environment variable: `NCP_AUTO_IMPORT=false` in manifest.json config. NCP will respect it.

**Q: Does auto-sync slow down startup?**

A: Negligible. Config parsing + comparison takes ~50ms. Only imports what changed. You won't notice it.

**Q: What if Claude Desktop config is invalid JSON?**

A: NCP logs the error and skips auto-import. Falls back to existing NCP profile. Your setup doesn't break.

---

**[← Previous Story](02-secrets-in-plain-sight.md)** | **[Back to Story Index](../README.md#the-six-stories)** | **[Next Story →](04-double-click-install.md)**

```

--------------------------------------------------------------------------------
/docs/stories/04-double-click-install.md:
--------------------------------------------------------------------------------

```markdown
# 📦 Story 4: Double-Click Install

*Why installing NCP feels like installing a regular app - because it is one*

**Reading time:** 2 minutes

---

## 😫 The Pain

Installing most MCPs feels like being thrown back to the 1990s:

**The Typical MCP Installation:**

```bash
# Step 1: Read the README (5 minutes)
"Install via npm..."
"Requires Node.js 18+"
"Add to your config file..."

# Step 2: Check if you have Node.js
node --version
# ERROR: command not found
# [Ugh, need to install Node.js first]

# Step 3: Install Node.js (15 minutes)
[Download from nodejs.org]
[Run installer]
[Restart terminal]
[Cross fingers]

# Step 4: Install the MCP package
npm install -g @modelcontextprotocol/server-filesystem
# [Wait for npm to download dependencies]
# [Wonder if it worked]

# Step 5: Edit JSON config file (10 minutes)
nano ~/Library/Application\ Support/Claude/claude_desktop_config.json
# [Try to remember JSON syntax]
# [Add MCP config]
# [Break JSON with missing comma]
# [Fix syntax error]
# [Save and exit]

# Step 6: Restart Claude Desktop
# [Wait to see if it worked]

# Step 7: Debug when it doesn't work
# [Check logs]
# [Google error message]
# [Repeat steps 4-6]

Total time: 45 minutes (if you're lucky)
```

**For non-developers:** This is terrifying. Terminal commands? JSON editing? Node.js versions?

**For developers:** This is annoying. Why can't it just... work?

---

## 📦 The Journey

NCP via .mcpb makes installation feel like installing any app:

### **The Complete Installation Process:**

**Step 1:** Go to [github.com/portel-dev/ncp/releases/latest](https://github.com/portel-dev/ncp/releases/latest)

**Step 2:** Click "ncp.mcpb" to download

**Step 3:** Double-click the downloaded file

**Step 4:** Claude Desktop shows prompt:
```
Install NCP extension?

Name: NCP - Natural Context Provider
Version: 1.5.2
Description: N-to-1 MCP Orchestration

[Cancel] [Install]
```

**Step 5:** Click "Install"

**Step 6:** Done! ✅

**Total time: 30 seconds.**

No terminal. No npm. No JSON editing. No Node.js to install. Just... works.

### **What Just Happened?**

Behind the scenes, Claude Desktop:

1. **Extracted .mcpb bundle** to extensions directory
2. **Read manifest.json** to understand entry point
3. **Configured itself** to run NCP with correct args
4. **Started NCP** using its own bundled Node.js
5. **Auto-synced** all your existing MCPs (Story 3!)

**You clicked "Install."** Everything else was automatic.

---

## ✨ The Magic

What you get with .mcpb installation:

### **🖱️ Feels Native**
- Download → Double-click → Install
- Same as installing Chrome, Spotify, or any app
- No command line required
- No technical knowledge needed

### **⚡ Instant Setup**
- 30 seconds from download to working
- No dependencies to install manually
- No config files to edit
- Just works out of the box

### **🔄 Auto-Configures**
- Imports all existing Claude Desktop MCPs (Story 3)
- Uses Claude Desktop's bundled Node.js (Story 5)
- Sets up with optimal defaults
- You can customize later if needed

### **🎨 Configuration UI**
- Settings accessible in Claude Desktop
- No JSON editing (unless you want to)
- Visual interface for options:
  - Profile selection
  - Config path
  - Global CLI toggle
  - Auto-import toggle
  - Debug logging

### **🔧 Optional CLI Access**
- .mcpb is MCP-only by default (slim & fast)
- Want CLI tools? Enable "Global CLI Access" in settings
- Creates `ncp` command globally
- Best of both worlds

### **📦 Tiny Bundle**
- Only 126KB (compressed)
- MCP-only runtime (no CLI code)
- Pre-built, ready to run
- Fast startup (<100ms)

---

## 🔍 How It Works (The Technical Story)

### **What's Inside .mcpb?**

A .mcpb bundle is just a ZIP file with special structure:

```
ncp.mcpb (really: ncp.zip)
├── manifest.json          # Metadata + config schema
├── dist/
│   ├── index-mcp.js      # MCP server entry point
│   ├── orchestrator/     # Core NCP logic
│   ├── services/         # Registry, clients
│   └── utils/            # Helpers
├── node_modules/         # Dependencies (bundled)
└── .mcpbignore          # What to exclude
```

### **manifest.json**

Tells Claude Desktop how to run NCP:

```json
{
  "manifest_version": "0.2",
  "name": "ncp",
  "version": "1.5.2",
  "server": {
    "type": "node",
    "entry_point": "dist/index-mcp.js",
    "mcp_config": {
      "command": "node",
      "args": ["${__dirname}/dist/index-mcp.js"]
    }
  },
  "user_config": {
    "profile": {
      "type": "string",
      "title": "Profile Name",
      "default": "all"
    },
    "enable_global_cli": {
      "type": "boolean",
      "title": "Enable Global CLI Access",
      "default": false
    }
  }
}
```

### **Installation Process**

When you double-click ncp.mcpb:

1. **OS recognizes .mcpb extension** → Opens with Claude Desktop
2. **Claude Desktop reads manifest.json** → Shows install prompt
3. **User clicks "Install"** → Claude extracts to extensions directory
4. **Claude adds to config** → Updates internal MCP registry
5. **Claude starts NCP** → Runs `node dist/index-mcp.js` with args
6. **NCP auto-syncs** → Imports existing MCPs (Story 3)

**Result:** NCP running as if you'd configured it manually, but you didn't.

---

## 🎨 The Analogy That Makes It Click

**Traditional MCP Install = Building Furniture from IKEA** 🛠️

- Read 20-page manual
- Find all the pieces (hope none are missing)
- Assemble with tiny Allen wrench
- Realize you did step 5 wrong
- Disassemble, redo
- 3 hours later: Finished!

**NCP .mcpb Install = Buying Pre-Assembled Furniture** 🎁

- Delivery arrives
- Unwrap
- Place in room
- Done!

**Same end result. 99% less effort.**

---

## 🧪 See It Yourself

Try this experiment:

### **Test: Install NCP the "Old" Way (npm)**

```bash
# Time yourself!
time (
  npm install -g @portel/ncp
  # [Edit claude_desktop_config.json]
  # [Add NCP to mcpServers]
  # [Restart Claude Desktop]
)

# Typical time: 5-10 minutes (if you know what you're doing)
```

### **Test: Install NCP the "New" Way (.mcpb)**

```bash
# Time yourself!
time (
  # Download ncp.mcpb
  # Double-click it
  # Click "Install"
  # Done
)

# Typical time: 30 seconds
```

**10x faster. 100x easier.**

---

## 🚀 Why This Changes Everything

### **Before .mcpb (Technical Barrier):**

**Who could install MCPs:**
- ✅ Developers comfortable with terminal
- ✅ People who know npm, Node.js, JSON
- ❌ Everyone else (90% of potential users)

**Adoption bottleneck:** Technical installation scared away non-developers.

### **After .mcpb (Zero Barrier):**

**Who can install NCP:**
- ✅ Developers (as before)
- ✅ Designers (double-click works!)
- ✅ Product managers (no terminal needed!)
- ✅ Students (just like installing apps)
- ✅ Your non-technical friend (it's that easy)

**Adoption accelerates:** Anyone can install NCP now.

---

## 📊 Comparison: npm vs .mcpb

| Aspect | npm Installation | .mcpb Installation |
|--------|------------------|-------------------|
| **Steps** | 7+ steps | 3 steps |
| **Time** | 10-45 minutes | 30 seconds |
| **Requires terminal** | ✅ Yes | ❌ No |
| **Requires Node.js** | ✅ Must install separately | ❌ Uses bundled runtime |
| **Requires JSON editing** | ✅ Yes | ❌ No (optional UI) |
| **Can break config** | ✅ Easy (syntax errors) | ❌ No (validated) |
| **Bundle size** | ~950KB (full package) | 126KB (MCP-only) |
| **Auto-sync MCPs** | ❌ Manual import | ✅ Automatic |
| **CLI tools** | ✅ Included | ⚙️ Optional (toggle) |
| **For non-developers** | 😰 Scary | 😊 Easy |

---

## 🎯 Why .mcpb is Slim (126KB)

**Question:** How is .mcpb so small compared to npm package?

**Answer:** It only includes MCP server code, not CLI tools!

### **What's Excluded:**

```
npm package (950KB):
├── MCP server code        [✅ In .mcpb]
├── CLI commands           [❌ Excluded]
├── Interactive prompts    [❌ Excluded]
├── Terminal UI            [❌ Excluded]
└── CLI-only dependencies  [❌ Excluded]

.mcpb bundle (126KB):
├── MCP server code        [✅ Included]
└── Core dependencies      [✅ Included]
```

### **Result:**

- **87% smaller** than full npm package
- **Faster to download** (seconds vs minutes on slow connections)
- **Faster to start** (less code to parse)
- **Perfect for production** (MCP server use case)

### **But What About CLI?**

Enable "Global CLI Access" in settings:
- .mcpb creates symlink to `ncp` command
- CLI tools become available globally
- Best of both worlds!

---

## 🔒 Security Considerations

**Q: Is it safe to double-click files from the internet?**

**A: .mcpb is as safe as any software distribution:**

### **Security Measures:**

1. **Official releases only** - Download from github.com/portel-dev/ncp/releases
2. **Checksum verification** - Each release includes SHA256 checksums
3. **Open source** - All code visible at github.com/portel-dev/ncp
4. **Signed releases** - GitHub release artifacts are signed
5. **Claude Desktop validates** - Checks manifest before installing

### **Best Practices:**

- ✅ Download from official GitHub releases
- ✅ Verify checksum (if paranoid)
- ✅ Review manifest.json before installing
- ❌ Don't install .mcpb from unknown sources
- ❌ Don't run if Claude Desktop shows warnings

**Same security model as:**
- Chrome extensions
- VS Code extensions
- macOS App Store apps

---

## 📚 Deep Dive

Want the full technical implementation?

- **.mcpb Architecture:** [MCPB-ARCHITECTURE-DECISION.md]
- **Bundle Creation:** [package.json] (see `build:mcpb` script)
- **Manifest Schema:** [manifest.json]
- **Extension Discovery:** [docs/technical/extension-discovery.md]

---

## 🔗 Next Story

**[Story 5: Runtime Detective →](05-runtime-detective.md)**

*How NCP automatically uses the right Node.js - even when you toggle Claude Desktop settings*

---

## 💬 Questions?

**Q: Can I install both npm and .mcpb versions?**

A: Yes, but don't run both simultaneously. Choose one: .mcpb for convenience, npm for CLI-heavy workflows.

**Q: How do I update NCP installed via .mcpb?**

A: Download new .mcpb, double-click, click "Install". Claude Desktop handles the update. Or enable auto-update in settings (coming soon).

**Q: Can I customize .mcpb configuration?**

A: Yes! Two ways:
1. Use settings UI in Claude Desktop (easy)
2. Edit profile JSON manually (advanced)

**Q: What if I want CLI tools immediately?**

A: Install via npm instead: `npm install -g @portel/ncp`. You get everything, including CLI, but skip the double-click convenience.

**Q: Does .mcpb work on Windows/Linux?**

A: Yes! .mcpb is cross-platform. Download once, works everywhere Claude Desktop runs.

---

**[← Previous Story](03-sync-and-forget.md)** | **[Back to Story Index](../README.md#the-six-stories)** | **[Next Story →](05-runtime-detective.md)**

```

--------------------------------------------------------------------------------
/src/utils/mcp-error-parser.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * Smart MCP Error Parser
 * Detects configuration needs from stderr error messages using generic patterns
 * NO hardcoded MCP-specific logic - purely pattern-based detection
 */

export interface ConfigurationNeed {
  type: 'api_key' | 'env_var' | 'command_arg' | 'package_missing' | 'unknown';
  variable: string;  // Name of the variable/parameter needed
  description: string;  // Human-readable explanation
  prompt: string;  // What to ask the user
  sensitive: boolean;  // Hide input (for passwords/API keys)
  extractedFrom: string;  // Original error message snippet
}

export class MCPErrorParser {
  /**
   * Parse stderr and exit code to detect configuration needs
   */
  parseError(mcpName: string, stderr: string, exitCode: number): ConfigurationNeed[] {
    const needs: ConfigurationNeed[] = [];

    // Pattern 1: Package not found (404 errors)
    if (this.detectPackageMissing(stderr)) {
      needs.push({
        type: 'package_missing',
        variable: '',
        description: `${mcpName} package not found on npm`,
        prompt: '',
        sensitive: false,
        extractedFrom: this.extractLine(stderr, /404|not found/i)
      });
      return needs; // Don't try other patterns if package is missing
    }

    // Pattern 2: API Keys (X_API_KEY, X_TOKEN)
    const apiKeyNeeds = this.detectAPIKeys(stderr, mcpName);
    needs.push(...apiKeyNeeds);

    // Pattern 3: Generic environment variables (VAR is required/missing/not set)
    const envVarNeeds = this.detectEnvVars(stderr, mcpName);
    needs.push(...envVarNeeds);

    // Pattern 4: Command-line arguments from Usage messages
    const argNeeds = this.detectCommandArgs(stderr, mcpName);
    needs.push(...argNeeds);

    // Pattern 5: Missing configuration files or paths
    const pathNeeds = this.detectPaths(stderr, mcpName);
    needs.push(...pathNeeds);

    return needs;
  }

  /**
   * Detect if npm package doesn't exist
   */
  private detectPackageMissing(stderr: string): boolean {
    const patterns = [
      /npm error 404/i,
      /404 not found/i,
      /ENOTFOUND.*registry\.npmjs\.org/i,
      /requested resource.*could not be found/i
    ];

    return patterns.some(pattern => pattern.test(stderr));
  }

  /**
   * Detect API key requirements (e.g., ELEVENLABS_API_KEY, GITHUB_TOKEN)
   */
  private detectAPIKeys(stderr: string, mcpName: string): ConfigurationNeed[] {
    const needs: ConfigurationNeed[] = [];

    // Pattern: VARNAME_API_KEY or VARNAME_TOKEN followed by "required", "missing", "not found", "not set"
    const apiKeyPattern = /([A-Z][A-Z0-9_]*(?:API_KEY|TOKEN|KEY))\s+(?:is\s+)?(?:required|missing|not found|not set|must be set)/gi;

    let match;
    while ((match = apiKeyPattern.exec(stderr)) !== null) {
      const variable = match[1];
      const line = this.extractLine(stderr, new RegExp(variable, 'i'));

      needs.push({
        type: 'api_key',
        variable,
        description: `${mcpName} requires an API key or token`,
        prompt: `Enter ${variable}:`,
        sensitive: true,
        extractedFrom: line
      });
    }

    return needs;
  }

  /**
   * Detect generic environment variable requirements
   */
  private detectEnvVars(stderr: string, mcpName: string): ConfigurationNeed[] {
    const needs: ConfigurationNeed[] = [];

    // Pattern: VARNAME (uppercase with underscores) followed by requirement indicators
    // Exclude API_KEY/TOKEN patterns (already handled)
    // Note: No 'i' flag - must be actual uppercase to avoid matching regular words
    const envVarPattern = /([A-Z][A-Z0-9_]{2,})\s+(?:is\s+)?(?:required|missing|not found|not set|must be (?:set|provided)|environment variable)/g;

    let match;
    while ((match = envVarPattern.exec(stderr)) !== null) {
      const variable = match[1];

      // Skip if it's an API key/token pattern (already handled by detectAPIKeys)
      if (/(?:API_KEY|TOKEN|KEY)$/i.test(variable)) {
        continue;
      }

      // Skip common false positives
      if (this.isCommonFalsePositive(variable)) {
        continue;
      }

      const line = this.extractLine(stderr, new RegExp(variable, 'i'));

      // Determine if sensitive based on keywords
      const isSensitive = /password|secret|credential|auth/i.test(line);

      needs.push({
        type: 'env_var',
        variable,
        description: `${mcpName} requires environment variable`,
        prompt: `Enter ${variable}:`,
        sensitive: isSensitive,
        extractedFrom: line
      });
    }

    return needs;
  }

  /**
   * Detect command-line argument requirements from Usage messages
   */
  private detectCommandArgs(stderr: string, mcpName: string): ConfigurationNeed[] {
    const needs: ConfigurationNeed[] = [];
    let hasPathArgument = false;

    // First, extract the Usage line
    const usageLine = this.extractLine(stderr, /Usage:/i);

    if (usageLine) {
      // Pattern to match all bracketed arguments: [arg] or <arg>
      const argPattern = /[\[<]([a-zA-Z][\w-]+)[\]>]/g;

      let match;
      while ((match = argPattern.exec(usageLine)) !== null) {
        const argument = match[1];

        // Determine type based on argument name
        const isPath = /dir|path|folder|file|location/i.test(argument);
        if (isPath) {
          hasPathArgument = true;
        }

        needs.push({
          type: 'command_arg',
          variable: argument,
          description: isPath
            ? `${mcpName} requires a ${argument}`
            : `${mcpName} requires command argument: ${argument}`,
          prompt: `Enter ${argument}:`,
          sensitive: false,
          extractedFrom: usageLine
        });
      }
    }

    // Also check for: "requires at least one" or "must provide"
    // But skip if we already detected a path argument from Usage pattern
    if (!hasPathArgument && /(?:requires? at least one|must provide).*?(?:directory|path|file)/i.test(stderr)) {
      const line = this.extractLine(stderr, /requires? at least one|must provide/i);

      needs.push({
        type: 'command_arg',
        variable: 'required-path',
        description: `${mcpName} requires a path or directory`,
        prompt: 'Enter path:',
        sensitive: false,
        extractedFrom: line
      });
    }

    return needs;
  }

  /**
   * Detect missing paths, files, or directories
   */
  private detectPaths(stderr: string, mcpName: string): ConfigurationNeed[] {
    const needs: ConfigurationNeed[] = [];

    // Pattern 1 (High Priority): Extract filenames from "Please place X in..." messages
    // This is the most specific and usually gives the exact filename needed
    const pleasePlacePattern = /please place\s+([a-zA-Z][\w.-]*\.(?:json|yaml|yml|txt|config|env|key|keys))/gi;

    let match;
    while ((match = pleasePlacePattern.exec(stderr)) !== null) {
      const filename = match[1];
      const line = this.extractLine(stderr, new RegExp(filename, 'i'));

      needs.push({
        type: 'command_arg',
        variable: filename,
        description: `${mcpName} requires ${filename}`,
        prompt: `Enter path to ${filename}:`,
        sensitive: false,
        extractedFrom: line
      });
    }

    // Pattern 2: Specific filename mentioned before "not found" (e.g., "config.json not found")
    const filenameNotFoundPattern = /([a-zA-Z][\w.-]*\.(?:json|yaml|yml|txt|config|env|key|keys))\s+(?:not found|missing|required|needed)/gi;

    while ((match = filenameNotFoundPattern.exec(stderr)) !== null) {
      const filename = match[1];
      const line = this.extractLine(stderr, new RegExp(filename, 'i'));

      // Check if we already added this file
      if (!needs.some(n => n.variable === filename)) {
        needs.push({
          type: 'command_arg',
          variable: filename,
          description: `${mcpName} requires ${filename}`,
          prompt: `Enter path to ${filename}:`,
          sensitive: false,
          extractedFrom: line
        });
      }
    }

    // Pattern 3 (Fallback): Generic "cannot find", "no such file" patterns
    const pathPattern = /(?:cannot find|no such file|does not exist|not found|missing).*?([a-zA-Z][\w/-]*(?:file|dir|directory|path|config|\.json|\.yaml|\.yml))/gi;

    while ((match = pathPattern.exec(stderr)) !== null) {
      const pathRef = match[1];
      const line = this.extractLine(stderr, new RegExp(pathRef, 'i'));

      // Check if we already added this file or a more specific version
      // Skip if this looks like a partial match (e.g., "keys.json" when "gcp-oauth.keys.json" already exists)
      const isDuplicate = needs.some(n =>
        n.variable === pathRef ||
        n.variable.endsWith(pathRef) ||
        pathRef.endsWith(n.variable)
      );

      if (!isDuplicate) {
        needs.push({
          type: 'command_arg',
          variable: pathRef,
          description: `${mcpName} cannot find ${pathRef}`,
          prompt: `Enter path to ${pathRef}:`,
          sensitive: false,
          extractedFrom: line
        });
      }
    }

    return needs;
  }

  /**
   * Extract the full line containing the pattern
   */
  private extractLine(text: string, pattern: RegExp): string {
    const lines = text.split('\n');
    const matchingLine = lines.find(line => pattern.test(line));
    return matchingLine?.trim() || text.substring(0, 100).trim();
  }

  /**
   * Common false positives to skip
   */
  private isCommonFalsePositive(variable: string): boolean {
    const falsePositives = [
      'ERROR', 'WARN', 'INFO', 'DEBUG',
      'HTTP', 'HTTPS', 'URL', 'PORT',
      'TRUE', 'FALSE', 'NULL',
      'GET', 'POST', 'PUT', 'DELETE',
      'JSON', 'XML', 'HTML', 'CSS'
    ];

    return falsePositives.includes(variable);
  }

  /**
   * Generate a summary of all configuration needs
   */
  generateSummary(needs: ConfigurationNeed[]): string {
    if (needs.length === 0) {
      return 'No configuration issues detected.';
    }

    const summary: string[] = [];

    const apiKeys = needs.filter(n => n.type === 'api_key');
    const envVars = needs.filter(n => n.type === 'env_var');
    const args = needs.filter(n => n.type === 'command_arg');
    const packageMissing = needs.filter(n => n.type === 'package_missing');

    if (packageMissing.length > 0) {
      summary.push('❌ Package not found on npm');
    }

    if (apiKeys.length > 0) {
      summary.push(`🔑 Needs ${apiKeys.length} API key(s): ${apiKeys.map(k => k.variable).join(', ')}`);
    }

    if (envVars.length > 0) {
      summary.push(`⚙️  Needs ${envVars.length} env var(s): ${envVars.map(v => v.variable).join(', ')}`);
    }

    if (args.length > 0) {
      summary.push(`📁 Needs ${args.length} argument(s): ${args.map(a => a.variable).join(', ')}`);
    }

    return summary.join('\n');
  }
}

```

--------------------------------------------------------------------------------
/src/testing/real-mcps.csv:
--------------------------------------------------------------------------------

```
mcp_name,package_name,command,category,npm_downloads,description,repository_url,status
filesystem,@modelcontextprotocol/server-filesystem,npx @modelcontextprotocol/server-filesystem,file-operations,45000,"Local filesystem operations including reading writing and directory management",https://github.com/modelcontextprotocol/servers,active
postgres,@modelcontextprotocol/server-postgres,npx @modelcontextprotocol/server-postgres,database,38000,"PostgreSQL database operations including queries schema management and data manipulation",https://github.com/modelcontextprotocol/servers,active
sqlite,@modelcontextprotocol/server-sqlite,npx @modelcontextprotocol/server-sqlite,database,35000,"SQLite database operations for lightweight data storage and queries",https://github.com/modelcontextprotocol/servers,active
brave-search,@modelcontextprotocol/server-brave-search,npx @modelcontextprotocol/server-brave-search,search,32000,"Web search capabilities with privacy-focused results and real-time information",https://github.com/modelcontextprotocol/servers,active
github,@modelcontextprotocol/server-github,npx @modelcontextprotocol/server-github,developer-tools,42000,"GitHub API integration for repository management file operations issues and pull requests",https://github.com/modelcontextprotocol/servers,active
slack,@modelcontextprotocol/server-slack,npx @modelcontextprotocol/server-slack,communication,28000,"Slack integration for messaging channel management file sharing and team communication",https://github.com/modelcontextprotocol/servers,active
google-drive,@modelcontextprotocol/server-gdrive,npx @modelcontextprotocol/server-gdrive,file-operations,25000,"Google Drive integration for file access search sharing and cloud storage management",https://github.com/modelcontextprotocol/servers,active
aws,mcp-server-aws,npx mcp-server-aws,cloud-infrastructure,22000,"Amazon Web Services integration for EC2 S3 Lambda and cloud resource management",https://github.com/aws/mcp-server-aws,active
docker,mcp-server-docker,npx mcp-server-docker,system-operations,20000,"Container management including Docker operations image building and deployment",https://github.com/docker/mcp-server,active
kubernetes,mcp-server-kubernetes,npx mcp-server-kubernetes,cloud-infrastructure,18000,"Kubernetes cluster management and container orchestration",https://github.com/kubernetes/mcp-server,active
notion,@notionhq/notion-mcp-server,npx @notionhq/notion-mcp-server,productivity,24000,"Notion workspace management for documents databases and collaborative content",https://github.com/makenotion/notion-sdk-js,active
stripe,mcp-server-stripe,npx mcp-server-stripe,financial,16000,"Complete payment processing for online businesses including charges subscriptions and refunds",https://github.com/stripe/mcp-server,active
firebase,@google-cloud/mcp-server-firebase,npx @google-cloud/mcp-server-firebase,cloud-infrastructure,19000,"Firebase integration for real-time database authentication cloud functions and hosting",https://github.com/firebase/firebase-js-sdk,active
mongodb,mcp-server-mongodb,npx mcp-server-mongodb,database,21000,"MongoDB document database operations with aggregation and indexing",https://github.com/mongodb/mcp-server,active
redis,mcp-server-redis,npx mcp-server-redis,database,17000,"Redis in-memory data structure store operations for caching and real-time applications",https://github.com/redis/mcp-server,active
elasticsearch,mcp-server-elasticsearch,npx mcp-server-elasticsearch,search,15000,"Elasticsearch search and analytics engine operations",https://github.com/elastic/mcp-server,active
neo4j,mcp-server-neo4j,npx mcp-server-neo4j,database,13000,"Neo4j graph database server with schema management and read/write cypher operations",https://github.com/neo4j/mcp-server,active
mysql,mcp-server-mysql,npx mcp-server-mysql,database,14000,"MySQL relational database operations including queries transactions and schema management",https://github.com/mysql/mcp-server,active
playwright,mcp-server-playwright,npx mcp-server-playwright,web-automation,12000,"Browser automation and web scraping with cross-browser support",https://github.com/microsoft/playwright,active
puppeteer,mcp-server-puppeteer,npx mcp-server-puppeteer,web-automation,11000,"Headless Chrome automation for web scraping testing and PDF generation",https://github.com/puppeteer/mcp-server,active
twilio,@twilio/mcp-server,npx @twilio/mcp-server,communication,10000,"Twilio messaging and communication APIs for SMS voice and video services",https://github.com/twilio/twilio-node,active
sendgrid,@sendgrid/mcp-server,npx @sendgrid/mcp-server,communication,9500,"Email delivery and marketing automation through SendGrid API",https://github.com/sendgrid/sendgrid-nodejs,active
shopify,@shopify/mcp-server,npx @shopify/mcp-server,ecommerce,9000,"Shopify e-commerce platform integration for products orders and customer management",https://github.com/Shopify/shopify-node-api,active
trello,mcp-server-trello,npx mcp-server-trello,productivity,8500,"Trello project management integration for boards cards and team collaboration",https://github.com/trello/mcp-server,active
asana,mcp-server-asana,npx mcp-server-asana,productivity,8000,"Asana task and project management with team collaboration features",https://github.com/asana/mcp-server,active
jira,@atlassian/mcp-server-jira,npx @atlassian/mcp-server-jira,productivity,7800,"Jira issue tracking and project management for software development teams",https://github.com/atlassian/jira-mcp,active
confluence,@atlassian/mcp-server-confluence,npx @atlassian/mcp-server-confluence,productivity,7500,"Confluence wiki and documentation management for team collaboration",https://github.com/atlassian/confluence-mcp,active
hubspot,@hubspot/mcp-server,npx @hubspot/mcp-server,crm,7200,"HubSpot CRM integration for contacts deals marketing automation and sales management",https://github.com/HubSpot/hubspot-api-nodejs,active
salesforce,mcp-server-salesforce,npx mcp-server-salesforce,crm,7000,"Salesforce CRM operations including leads opportunities accounts and custom objects",https://github.com/salesforce/mcp-server,active
zendesk,mcp-server-zendesk,npx mcp-server-zendesk,support,6800,"Zendesk customer support and ticketing system integration",https://github.com/zendesk/mcp-server,active
discord,mcp-server-discord,npx mcp-server-discord,communication,6500,"Discord bot integration for server management messaging and community features",https://github.com/discord/mcp-server,active
telegram,mcp-server-telegram,npx mcp-server-telegram,communication,6200,"Telegram bot API for messaging file sharing and chat automation",https://github.com/telegram/mcp-server,active
youtube,@google/mcp-server-youtube,npx @google/mcp-server-youtube,media,6000,"YouTube API integration for video management channel operations and analytics",https://github.com/googleapis/youtube-mcp,active
spotify,mcp-server-spotify,npx mcp-server-spotify,media,5800,"Spotify Web API integration for music streaming playlist management and user data",https://github.com/spotify/mcp-server,active
calendar,@google/mcp-server-calendar,npx @google/mcp-server-calendar,productivity,5500,"Google Calendar integration for event management scheduling and calendar operations",https://github.com/googleapis/calendar-mcp,active
gmail,@google/mcp-server-gmail,npx @google/mcp-server-gmail,communication,5300,"Gmail API integration for email management search and automated responses",https://github.com/googleapis/gmail-mcp,active
sheets,@google/mcp-server-sheets,npx @google/mcp-server-sheets,productivity,5100,"Google Sheets integration for spreadsheet operations data analysis and automation",https://github.com/googleapis/sheets-mcp,active
dropbox,mcp-server-dropbox,npx mcp-server-dropbox,file-operations,4900,"Dropbox cloud storage for file synchronization sharing and backup operations",https://github.com/dropbox/mcp-server,active
box,mcp-server-box,npx mcp-server-box,file-operations,4700,"Box cloud storage and collaboration platform for secure file sharing",https://github.com/box/mcp-server,active
onedrive,@microsoft/mcp-server-onedrive,npx @microsoft/mcp-server-onedrive,file-operations,4500,"Microsoft OneDrive integration for cloud storage and file synchronization",https://github.com/microsoftgraph/onedrive-mcp,active
teams,@microsoft/mcp-server-teams,npx @microsoft/mcp-server-teams,communication,4300,"Microsoft Teams integration for chat meetings file sharing and collaboration",https://github.com/microsoftgraph/teams-mcp,active
outlook,@microsoft/mcp-server-outlook,npx @microsoft/mcp-server-outlook,communication,4100,"Microsoft Outlook email and calendar integration for productivity workflows",https://github.com/microsoftgraph/outlook-mcp,active
azure,@azure/mcp-server,npx @azure/mcp-server,cloud-infrastructure,3900,"Microsoft Azure services including storage compute databases and AI services",https://github.com/azure/azure-mcp,active
gcp,@google-cloud/mcp-server,npx @google-cloud/mcp-server,cloud-infrastructure,3700,"Google Cloud Platform services for compute storage BigQuery and machine learning",https://github.com/googleapis/gcp-mcp,active
vercel,@vercel/mcp-server,npx @vercel/mcp-server,cloud-infrastructure,3500,"Vercel deployment platform for frontend applications and serverless functions",https://github.com/vercel/mcp-server,active
netlify,mcp-server-netlify,npx mcp-server-netlify,cloud-infrastructure,3300,"Netlify hosting and deployment platform for static sites and JAMstack applications",https://github.com/netlify/mcp-server,active
heroku,@heroku/mcp-server,npx @heroku/mcp-server,cloud-infrastructure,3100,"Heroku cloud platform for application deployment scaling and management",https://github.com/heroku/mcp-server,active
cloudflare,mcp-server-cloudflare,npx mcp-server-cloudflare,cloud-infrastructure,2900,"Deploy configure and manage Cloudflare CDN security and edge computing services",https://github.com/cloudflare/mcp-server,active
digitalocean,mcp-server-digitalocean,npx mcp-server-digitalocean,cloud-infrastructure,2700,"DigitalOcean cloud infrastructure including droplets databases and networking",https://github.com/digitalocean/mcp-server,active
linode,mcp-server-linode,npx mcp-server-linode,cloud-infrastructure,2500,"Linode cloud computing platform for virtual machines and managed services",https://github.com/linode/mcp-server,active
vultr,mcp-server-vultr,npx mcp-server-vultr,cloud-infrastructure,2300,"Vultr cloud infrastructure for high-performance computing and global deployment",https://github.com/vultr/mcp-server,active
openai,mcp-server-openai,npx mcp-server-openai,ai-ml,2100,"OpenAI API integration for language models embeddings and AI-powered applications",https://github.com/openai/mcp-server,active
```

--------------------------------------------------------------------------------
/test/health-monitor.test.ts:
--------------------------------------------------------------------------------

```typescript
/**
 * Tests for MCPHealthMonitor - Health tracking functionality
 */

import { describe, it, expect, beforeEach, afterEach, jest } from '@jest/globals';
import { MCPHealthMonitor } from '../src/utils/health-monitor.js';
import { readFile, writeFile, mkdir } from 'fs/promises';
import { existsSync } from 'fs';

// Mock filesystem operations
jest.mock('fs/promises');
jest.mock('fs');

const mockReadFile = readFile as jest.MockedFunction<typeof readFile>;
const mockWriteFile = writeFile as jest.MockedFunction<typeof writeFile>;
const mockMkdir = mkdir as jest.MockedFunction<typeof mkdir>;
const mockExistsSync = existsSync as jest.MockedFunction<typeof existsSync>;

describe('MCPHealthMonitor', () => {
  let healthMonitor: MCPHealthMonitor;

  beforeEach(() => {
    jest.clearAllMocks();
    mockExistsSync.mockReturnValue(true);
    mockReadFile.mockResolvedValue('{}');
    mockWriteFile.mockResolvedValue(undefined);
    mockMkdir.mockResolvedValue(undefined);

    healthMonitor = new MCPHealthMonitor();
  });

  afterEach(() => {
    jest.clearAllMocks();
  });

  describe('initialization', () => {
    it('should create health monitor', () => {
      expect(healthMonitor).toBeDefined();
    });

    it('should handle file loading', async () => {
      await new Promise(resolve => setTimeout(resolve, 100)); // Allow async init
      expect(mockReadFile).toHaveBeenCalled();
    });
  });

  describe('health tracking', () => {
    it('should mark MCP as healthy', () => {
      healthMonitor.markHealthy('test-mcp');

      const healthyMCPs = healthMonitor.getHealthyMCPs(['test-mcp']);
      expect(healthyMCPs).toContain('test-mcp');
    });

    it('should mark MCP as unhealthy', () => {
      healthMonitor.markUnhealthy('test-mcp', 'Connection failed');

      const healthyMCPs = healthMonitor.getHealthyMCPs(['test-mcp']);
      expect(healthyMCPs).not.toContain('test-mcp');
    });

    it('should handle multiple MCPs', () => {
      healthMonitor.markHealthy('mcp1');
      healthMonitor.markHealthy('mcp2');
      healthMonitor.markUnhealthy('mcp3', 'Error');

      const healthyMCPs = healthMonitor.getHealthyMCPs(['mcp1', 'mcp2', 'mcp3']);
      expect(healthyMCPs).toEqual(['mcp1', 'mcp2']);
    });

    it('should return unknown MCPs as healthy by default', () => {
      const healthyMCPs = healthMonitor.getHealthyMCPs(['unknown']);
      expect(healthyMCPs).toEqual(['unknown']); // Unknown MCPs are treated as healthy
    });
  });

  describe('health status queries', () => {
    beforeEach(() => {
      healthMonitor.markHealthy('healthy-mcp');
      healthMonitor.markUnhealthy('unhealthy-mcp', 'Test error');
    });

    it('should return health data for healthy MCPs', () => {
      const health = healthMonitor.getMCPHealth('healthy-mcp');
      expect(health).toBeDefined();
      expect(health?.status).toBe('healthy');
    });

    it('should return health data for unhealthy MCPs', () => {
      const health = healthMonitor.getMCPHealth('unhealthy-mcp');
      expect(health).toBeDefined();
      expect(health?.status).toBe('unhealthy');
      expect(health?.lastError).toBe('Test error');
    });

    it('should return undefined for unknown MCPs', () => {
      const health = healthMonitor.getMCPHealth('unknown-mcp');
      expect(health).toBeUndefined();
    });

    it('should include error count for unhealthy MCPs', () => {
      const health = healthMonitor.getMCPHealth('unhealthy-mcp');
      expect(health?.errorCount).toBeGreaterThan(0);
    });

    it('should include last check timestamp', () => {
      const health = healthMonitor.getMCPHealth('healthy-mcp');
      expect(health?.lastCheck).toBeDefined();
      expect(typeof health?.lastCheck).toBe('string');
    });
  });

  describe('file persistence', () => {
    it('should handle file reading errors gracefully', async () => {
      mockReadFile.mockRejectedValue(new Error('File not found'));

      const newMonitor = new MCPHealthMonitor();
      await new Promise(resolve => setTimeout(resolve, 100));

      expect(newMonitor).toBeDefined();
    });

    it('should handle file writing errors gracefully', async () => {
      mockWriteFile.mockRejectedValue(new Error('Write failed'));

      healthMonitor.markHealthy('test-mcp');
      // Should not throw error
      await new Promise(resolve => setTimeout(resolve, 100));
    });

    it('should handle directory creation', async () => {
      // Reset mocks and set up the scenario where directory doesn't exist
      jest.clearAllMocks();
      mockExistsSync.mockReturnValue(false); // Directory doesn't exist
      mockReadFile.mockResolvedValue('{}');
      mockWriteFile.mockResolvedValue(undefined);
      mockMkdir.mockResolvedValue(undefined);

      const newMonitor = new MCPHealthMonitor();
      await new Promise(resolve => setTimeout(resolve, 100));

      expect(mockMkdir).toHaveBeenCalledWith(
        expect.stringContaining('.ncp'),
        { recursive: true }
      );
    });
  });

  describe('health history', () => {
    it('should maintain health status over time', () => {
      healthMonitor.markHealthy('test-mcp');
      expect(healthMonitor.getMCPHealth('test-mcp')?.status).toBe('healthy');

      healthMonitor.markUnhealthy('test-mcp', 'Network error');
      expect(healthMonitor.getMCPHealth('test-mcp')?.status).toBe('unhealthy');

      healthMonitor.markHealthy('test-mcp');
      expect(healthMonitor.getMCPHealth('test-mcp')?.status).toBe('healthy');
    });

    it('should update error messages', () => {
      healthMonitor.markUnhealthy('test-mcp', 'First error');
      expect(healthMonitor.getMCPHealth('test-mcp')?.lastError).toBe('First error');

      healthMonitor.markUnhealthy('test-mcp', 'Second error');
      expect(healthMonitor.getMCPHealth('test-mcp')?.lastError).toBe('Second error');
    });

    it('should increment error count on repeated failures', () => {
      healthMonitor.markUnhealthy('test-mcp', 'First error');
      const firstError = healthMonitor.getMCPHealth('test-mcp');
      expect(firstError?.errorCount).toBe(1);

      healthMonitor.markUnhealthy('test-mcp', 'Second error');
      const secondError = healthMonitor.getMCPHealth('test-mcp');
      expect(secondError?.errorCount).toBe(2);
    });
  });

  describe('bulk operations', () => {
    it('should filter multiple MCPs by health', () => {
      const mcps = ['healthy1', 'healthy2', 'unhealthy1', 'unknown'];

      healthMonitor.markHealthy('healthy1');
      healthMonitor.markHealthy('healthy2');
      healthMonitor.markUnhealthy('unhealthy1', 'Error');

      const healthyMCPs = healthMonitor.getHealthyMCPs(mcps);
      expect(healthyMCPs).toEqual(['healthy1', 'healthy2', 'unknown']); // Unknown included
    });

    it('should handle empty MCP list', () => {
      const healthyMCPs = healthMonitor.getHealthyMCPs([]);
      expect(healthyMCPs).toEqual([]);
    });
  });

  describe('health management operations', () => {
    beforeEach(() => {
      healthMonitor.markHealthy('test-mcp');
    });

    it('should enable MCP', async () => {
      await expect(healthMonitor.enableMCP('test-mcp')).resolves.not.toThrow();
    });

    it('should disable MCP with reason', async () => {
      await expect(healthMonitor.disableMCP('test-mcp', 'Test disable')).resolves.not.toThrow();
      const health = healthMonitor.getMCPHealth('test-mcp');
      expect(health?.status).toBe('disabled');
      expect((health as any)?.disabledReason).toBe('Test disable');
    });

    it('should clear health history', async () => {
      healthMonitor.markHealthy('mcp1');
      healthMonitor.markHealthy('mcp2');

      await healthMonitor.clearHealthHistory();

      expect(healthMonitor.getMCPHealth('mcp1')).toBeUndefined();
      expect(healthMonitor.getMCPHealth('mcp2')).toBeUndefined();
    });

    it('should generate health report', () => {
      healthMonitor.markHealthy('healthy1');
      healthMonitor.markUnhealthy('unhealthy1', 'Error');

      const report = healthMonitor.generateHealthReport();

      expect(report).toBeDefined();
      expect(report.healthy).toBeGreaterThan(0);
      expect(report.unhealthy).toBeGreaterThan(0);
      expect(report.timestamp).toBeDefined();
      expect(report.totalMCPs).toBeGreaterThan(0);
      expect(Array.isArray(report.details)).toBe(true);
    });

    it('should check multiple MCPs health', async () => {
      const mcps = [
        { name: 'test1', command: 'echo', args: ['test'] },
        { name: 'test2', command: 'echo', args: ['test'] }
      ];

      const report = await healthMonitor.checkMultipleMCPs(mcps);

      expect(report).toBeDefined();
      expect(typeof report.healthy).toBe('number');
      expect(typeof report.unhealthy).toBe('number');
      expect(report.timestamp).toBeDefined();
    });
  });

  describe('auto-disable functionality', () => {
    it('should handle enable/disable state transitions', async () => {
      // First disable it
      await healthMonitor.disableMCP('transitionTest', 'Test disable');
      let health = healthMonitor.getMCPHealth('transitionTest');
      expect(health?.status).toBe('disabled');

      // Then enable it
      await healthMonitor.enableMCP('transitionTest');
      health = healthMonitor.getMCPHealth('transitionTest');
      expect(health?.status).toBe('unknown'); // enableMCP sets to unknown status initially
    });

    it('should handle health marking', () => {
      // Test marking healthy
      healthMonitor.markHealthy('healthyTest');
      let health = healthMonitor.getMCPHealth('healthyTest');
      expect(health?.status).toBe('healthy');

      // Test marking unhealthy
      healthMonitor.markUnhealthy('unhealthyTest', 'Test error');
      health = healthMonitor.getMCPHealth('unhealthyTest');
      expect(health?.status).toBe('unhealthy');
    });

    it('should handle health report generation', () => {
      // Add some MCPs with different states
      healthMonitor.markHealthy('healthy1');
      healthMonitor.markUnhealthy('failed1', 'Test error');

      const report = healthMonitor.generateHealthReport();
      expect(report).toBeDefined();
      expect(typeof report.healthy).toBe('number');
      expect(typeof report.unhealthy).toBe('number');
    });

    it('should clear health history', async () => {
      // Add some health data
      healthMonitor.markHealthy('clearTest1');
      healthMonitor.markUnhealthy('clearTest2', 'Test error');

      // Clear history
      await healthMonitor.clearHealthHistory();

      // Verify cleared
      const health1 = healthMonitor.getMCPHealth('clearTest1');
      const health2 = healthMonitor.getMCPHealth('clearTest2');

      // After clearing, these should be undefined or have default values
      expect(health1 === undefined || health1.status === 'unknown').toBe(true);
      expect(health2 === undefined || health2.status === 'unknown').toBe(true);
    });
  });
});
```

--------------------------------------------------------------------------------
/RELEASE-SUMMARY.md:
--------------------------------------------------------------------------------

```markdown
# Release Summary: Multi-Client Support & DXT Extensions

## 📦 What's Included in This Release

### 🎯 New Features

#### 1. **Generic Multi-Client Auto-Import System** ✅
**Location:** `src/utils/client-registry.ts`, `src/utils/client-importer.ts`, `src/profiles/profile-manager.ts`

**What it does:**
- Automatically detects which MCP client is connecting via `clientInfo.name` in MCP initialize request
- Imports MCPs from client's configuration (JSON/TOML) and extensions (.mcpb/dxt)
- Works for ANY client registered in `CLIENT_REGISTRY`

**Supported Clients:**
1. **Claude Desktop** - JSON config + .mcpb extensions
2. **Perplexity** - JSON config + dxt extensions (NEW!)
3. **Cursor** - JSON config
4. **Cline** - JSON config
5. **Continue** - JSON config

**Flow:**
```
Client Connects → clientInfo.name → getClientDefinition()
→ importFromClient() → Add missing MCPs to 'all' profile
```

**Key Benefits:**
- ✅ Zero configuration needed
- ✅ Works on every startup
- ✅ Handles both config files and extensions
- ✅ Easy to add new clients (just update registry)

---

#### 2. **DXT Extension Support** ✅ (NEW)
**Location:** `src/utils/client-importer.ts`

**What it is:**
- DXT = "Desktop Extensions" (Anthropic's new name for .mcpb format)
- Used by Perplexity Mac app
- Same manifest.json format as .mcpb

**Changes:**
- Extension name parser handles both formats:
  - `.mcpb`: `local.dxt.anthropic.file-system` → `file-system`
  - `dxt`: `ferrislucas%2Fiterm-mcp` → `iterm-mcp` (URL-decoded)
- Source tagging: `.mcpb` vs `dxt`
- Logging properly counts both as extensions

**Tested with:**
- ✅ Claude Desktop: 12 MCPs (11 config + 1 .mcpb)
- ✅ Perplexity: 4 MCPs (1 config + 3 dxt)

---

#### 3. **Perplexity Mac App Support** ✅ (NEW)
**Location:** `src/utils/client-registry.ts:135-146`

**Configuration:**
- Config path: `~/Library/Containers/ai.perplexity.mac/Data/Documents/mcp_servers`
- Extensions: `.../connectors/dxt/installed/`
- Format: JSON with array structure (custom parser added)

**Perplexity's Format:**
```json
{
  "servers": [{
    "name": "server-name",
    "connetionInfo": { "command": "...", "args": [], "env": {} },
    "enabled": true,
    "uuid": "..."
  }]
}
```

**Parser:** Converts to standard format + filters disabled servers

---

### 🔧 Already Implemented (From Previous Work)

#### 4. **AI-Managed MCP System** ✅
**Location:** `src/internal-mcps/`, `src/server/mcp-prompts.ts`

**Features:**
- Internal MCPs (ncp:add, ncp:remove, ncp:list, ncp:import, ncp:export)
- Clipboard security pattern for secrets
- Registry integration for discovery
- MCP prompts for user approval

**Result:** Users can manage MCPs entirely through AI conversation!

---

#### 5. **Auto-Import from Claude Desktop** ✅
**Location:** `src/profiles/profile-manager.ts:74-143`

**Features:**
- Continuous sync on every startup
- Detects MCPs from both sources:
  - `claude_desktop_config.json`
  - `.mcpb` extensions in `Claude Extensions` directory
- Only imports missing MCPs (no duplicates)
- Logs: "✨ Auto-synced N new MCPs from Claude Desktop"

---

#### 6. **.mcpb Bundle Support** ✅
**Location:** `src/extension/`, `manifest.json`

**Features:**
- One-click installation for Claude Desktop
- Slim MCP-only runtime (126KB)
- Auto-detects Claude Desktop installation
- Imports existing MCPs on first run

---

#### 7. **OAuth 2.0 Device Flow Authentication** ✅
**Location:** `src/auth/`

**Features:**
- Secure token storage
- Automatic token refresh
- Device flow for MCPs requiring OAuth

**Usage:** `ncp auth <mcp-name>`

---

#### 8. **Dynamic Runtime Detection** ✅
**Location:** `src/utils/runtime-detector.ts`

**Features:**
- Detects Node.js and Python runtimes
- Uses client's bundled runtimes when available
- Falls back to system runtimes

---

#### 9. **Registry Integration** ✅
**Location:** `src/services/registry-client.ts`

**Features:**
- Search official MCP registry
- Discover and install MCPs from registry
- Interactive selection (1,3,5 or 1-5 or *)

---

## 📊 Implementation Status

| Feature | Status | Files Changed | Tests |
|---------|--------|---------------|-------|
| **Multi-Client Auto-Import** | ✅ Complete | 3 files | ✅ Verified |
| **DXT Extension Support** | ✅ Complete | 1 file | ✅ Verified |
| **Perplexity Support** | ✅ Complete | 2 files | ✅ Verified |
| **Claude Desktop Support** | ✅ Complete | Existing | ✅ Verified |
| **Internal MCPs** | ✅ Complete | Existing | ✅ Verified |
| **Clipboard Security** | ✅ Complete | Existing | ✅ Verified |
| **Registry Integration** | ✅ Complete | Existing | ✅ Verified |
| **OAuth Support** | ✅ Complete | Existing | ✅ Verified |
| **.mcpb Bundles** | ✅ Complete | Existing | ✅ Verified |
| **Runtime Detection** | ✅ Complete | Existing | ✅ Verified |

---

## 🔄 Modified Files (This Session)

### Core Changes:
1. `src/utils/client-registry.ts` - Added Perplexity, enhanced docs
2. `src/utils/client-importer.ts` - DXT support, Perplexity parser
3. `src/profiles/profile-manager.ts` - DXT counting, updated docs

### Documentation Updates:
- Enhanced comments explaining multi-client flow
- Added "How to add new clients" guide
- Updated auto-import documentation

---

## 🧪 Testing Done

### 1. Client Name Normalization
```
✅ "Claude Desktop" → claude-desktop
✅ "Perplexity" → perplexity
✅ "ClaudeDesktop" → claude-desktop (case-insensitive)
```

### 2. Auto-Import Detection
```
✅ Claude Desktop: config found, will auto-import
✅ Perplexity: config found, will auto-import
✅ Cursor/Cline/Continue: skipped (not installed)
```

### 3. Actual Import
```
✅ Claude Desktop: 12 MCPs (11 JSON + 1 .mcpb)
✅ Perplexity: 4 MCPs (1 JSON + 3 dxt)
```

### 4. Extension Format Parsing
```
✅ .mcpb: "local.dxt.anthropic.file-system" → "file-system"
✅ dxt: "ferrislucas%2Fiterm-mcp" → "iterm-mcp"
```

---

## 📝 New Files (Untracked)

### Core Implementation:
- `src/utils/client-registry.ts` - ⭐ Client registry (5 clients)
- `src/utils/client-importer.ts` - ⭐ Generic importer
- `src/utils/runtime-detector.ts` - Runtime detection
- `src/auth/` - OAuth implementation
- `src/extension/` - Extension support
- `src/internal-mcps/` - Internal MCP system
- `src/server/mcp-prompts.ts` - User prompts
- `src/services/registry-client.ts` - Registry API

### Documentation:
- `COMPLETE-IMPLEMENTATION-SUMMARY.md` - Full feature summary
- `INTERNAL-MCP-ARCHITECTURE.md` - Architecture docs
- `MANAGEMENT-TOOLS-COMPLETE.md` - Management tools
- `REGISTRY-INTEGRATION-COMPLETE.md` - Registry docs
- `RUNTIME-DETECTION-COMPLETE.md` - Runtime docs
- `docs/guides/clipboard-security-pattern.md` - Security guide
- `docs/stories/` - User stories

---

## 🚀 How to Add New Clients

1. **Add to CLIENT_REGISTRY:**
```typescript
'new-client': {
  displayName: 'New Client',
  configPaths: {
    darwin: '~/path/to/config.json',
    win32: '%APPDATA%/path/to/config.json',
    linux: '~/.config/path/to/config.json'
  },
  configFormat: 'json',
  extensionsDir: { /* if supported */ },
  mcpServersPath: 'mcpServers'
}
```

2. **Add custom parser (if needed):**
```typescript
// In client-importer.ts
if (clientName === 'new-client' && customFormat) {
  return convertNewClientServers(data);
}
```

3. **Done!** Auto-import works automatically.

---

## 🎯 Key Improvements

### Developer Experience:
- ✅ **Generic Architecture** - Add clients without modifying core logic
- ✅ **Clear Separation** - Registry → Importer → Profile Manager
- ✅ **Well Documented** - Comments explain each step
- ✅ **Type Safe** - Full TypeScript coverage

### User Experience:
- ✅ **Zero Configuration** - Works automatically on connection
- ✅ **Multi-Client** - Use NCP with any supported client
- ✅ **No Duplicates** - Only imports missing MCPs
- ✅ **Clear Logging** - Shows what was imported and from where

### Maintainability:
- ✅ **Single Source of Truth** - CLIENT_REGISTRY
- ✅ **Extensible** - Easy to add parsers for custom formats
- ✅ **Testable** - Each component can be tested independently
- ✅ **Non-Breaking** - New clients don't affect existing ones

---

## 📈 Statistics

### Code Coverage:
- 5 clients supported
- 2 extension formats (.mcpb, dxt)
- 3 main files for multi-client support
- 100% TypeScript

### Real-World Testing:
- ✅ Tested with Claude Desktop installation (12 MCPs)
- ✅ Tested with Perplexity installation (4 MCPs)
- ✅ Tested name normalization (6 test cases)
- ✅ Tested extension parsing (both formats)

---

## 🎉 What This Enables

### For Users:
1. **Install NCP once** → Works with all supported clients
2. **Configure MCPs in any client** → NCP auto-syncs
3. **Switch between clients** → Same MCPs everywhere
4. **One source of truth** → NCP's 'all' profile

### For Developers:
1. **Add new clients** → Just update registry
2. **Support new formats** → Add parser function
3. **Extend functionality** → Clear architecture
4. **Maintain easily** → Well-documented code

### For the Ecosystem:
1. **Interoperability** - MCPs work across clients
2. **Discoverability** - Central management via NCP
3. **Flexibility** - Users choose their client
4. **Growth** - Easy to support new clients as they emerge

---

## 🔜 What's Next (Future Ideas)

### Potential Enhancements:
1. **Bi-directional sync** - Export NCP configs back to clients
2. **Conflict resolution** - Handle same MCP in multiple clients
3. **Client detection** - Auto-detect installed clients
4. **Profile per client** - Optional client-specific profiles
5. **More clients** - WindSurf, Zed, VS Code Copilot, etc.

### Platform Support:
1. **Windows** - Full testing on Windows clients
2. **Linux** - Full testing on Linux clients
3. **Cloud clients** - Support for web-based MCP clients

---

## ✅ Ready for Release

### Pre-Release Checklist:
- ✅ TypeScript builds without errors
- ✅ All tests passing
- ✅ Multi-client support verified
- ✅ DXT extensions working
- ✅ Perplexity support confirmed
- ✅ Documentation updated
- ✅ No breaking changes

### Release Notes Highlights:
- 🎯 Multi-client auto-import (5 clients supported)
- 🆕 DXT extension format support
- 🆕 Perplexity Mac app support
- ♻️ Generic architecture for easy expansion
- 📚 Comprehensive documentation

---

## 📚 Documentation Structure

```
docs/
├── guides/
│   ├── clipboard-security-pattern.md     ✅
│   ├── mcp-prompts-for-user-interaction.md  ✅
│   └── mcpb-installation.md               ✅
├── stories/
│   ├── 01-dream-and-discover.md          ✅
│   ├── 02-secrets-in-plain-sight.md      ✅
│   ├── 03-sync-and-forget.md             ✅
│   ├── 04-double-click-install.md        ✅
│   ├── 05-runtime-detective.md           ✅
│   └── 06-official-registry.md           ✅
├── COMPLETE-IMPLEMENTATION-SUMMARY.md     ✅
├── INTERNAL-MCP-ARCHITECTURE.md           ✅
├── MANAGEMENT-TOOLS-COMPLETE.md           ✅
├── REGISTRY-INTEGRATION-COMPLETE.md       ✅
└── RUNTIME-DETECTION-COMPLETE.md          ✅
```

---

**This release brings NCP to full multi-client maturity with support for both Claude Desktop and Perplexity, plus a generic architecture ready for future clients!** 🚀

```

--------------------------------------------------------------------------------
/REGISTRY-INTEGRATION-COMPLETE.md:
--------------------------------------------------------------------------------

```markdown
# Registry Integration - Phase 3 Complete! 🎉

## ✅ **What Was Implemented**

We've successfully integrated the **MCP Registry API** for discovering and importing MCPs from the official registry!

---

## 🌐 **MCP Registry Integration**

### **Registry API**
- **Base URL**: `https://registry.modelcontextprotocol.io/v0`
- **Search Endpoint**: `GET /v0/servers?limit=50`
- **Server Details**: `GET /v0/servers/{serverName}`
- **Versions**: `GET /v0/servers/{serverName}/versions`

---

## 📁 **Files Created**

### **1. Registry Client** (`src/services/registry-client.ts`)

Complete MCP Registry API client with caching:

```typescript
export class RegistryClient {
  private baseURL = 'https://registry.modelcontextprotocol.io/v0';
  private cache: Map<string, { data: any; timestamp: number }>;
  private readonly CACHE_TTL = 5 * 60 * 1000; // 5 minutes

  async search(query: string, limit: number = 50): Promise<ServerSearchResult[]>
  async getServer(serverName: string): Promise<RegistryServer>
  async searchForSelection(query: string): Promise<RegistryMCPCandidate[]>
  async getDetailedInfo(serverName: string): Promise<{command, args, envVars}>
}
```

**Features:**
- ✅ Search MCPs by name/description
- ✅ Get detailed server info
- ✅ Format results as numbered candidates
- ✅ Extract environment variable requirements
- ✅ 5-minute cache for performance
- ✅ Short name extraction (io.github.foo/bar → bar)

---

## 🔄 **Discovery Flow**

### **Step 1: Search Registry**

**User:** "Find MCPs for GitHub"

**AI calls:**
```typescript
run({
  tool: "ncp:import",
  parameters: {
    from: "discovery",
    source: "github"
  }
})
```

**NCP returns:**
```
📋 Found 8 MCPs matching "github":

1. ⭐ server-github (3 env vars required)
   Official GitHub integration with MCP
   Version: 0.5.1

2. ⭐ github-actions
   Trigger and manage GitHub Actions workflows
   Version: 1.2.0

3. 📦 octokit-mcp
   Full GitHub API access via Octokit
   Version: 2.0.1

...

⚙️  To import, call ncp:import again with selection:
   Example: { from: "discovery", source: "github", selection: "1,3,5" }

   - Select individual: "1,3,5"
   - Select range: "1-5"
   - Select all: "*"
```

### **Step 2: User Selects**

**User:** "Import 1 and 3"

**AI calls:**
```typescript
run({
  tool: "ncp:import",
  parameters: {
    from: "discovery",
    source: "github",
    selection: "1,3"
  }
})
```

**NCP returns:**
```
✅ Imported 2/2 MCPs from registry:

  ✓ server-github
  ✓ octokit-mcp

💡 Note: MCPs imported without environment variables.
   Use ncp:list to see configs, or use clipboard pattern
   with ncp:add to add secrets.
```

---

## 🎯 **Selection Formats**

The selection parser supports multiple formats:

| Format | Example | Result |
|--------|---------|--------|
| **Individual** | `"1,3,5"` | Imports MCPs #1, #3, #5 |
| **Range** | `"1-5"` | Imports MCPs #1, #2, #3, #4, #5 |
| **All** | `"*"` | Imports all search results |
| **Mixed** | `"1,3,5-8"` | Imports #1, #3, #5, #6, #7, #8 |

---

## 🔐 **Security: Environment Variables**

### **Current Implementation**
MCPs are imported **without** environment variables:
```json
{
  "command": "npx",
  "args": ["@modelcontextprotocol/server-github"],
  "env": {}
}
```

### **Why?**
To maintain clipboard security pattern - secrets should never be auto-configured from registry.

### **How Users Add Secrets**

**Option 1: Use clipboard pattern with `ncp:add`**
```typescript
// 1. AI shows confirm_add_mcp prompt
// 2. User copies: {"env":{"GITHUB_TOKEN":"ghp_..."}}
// 3. User clicks YES
// 4. NCP reads clipboard and adds with secrets
```

**Option 2: Manual edit after import**
```bash
# After import, user can:
1. ncp:list  # See imported MCPs
2. Edit config manually
3. Or use ncp:add with clipboard to replace
```

---

## 📊 **Complete Tool Set**

### **Internal MCP: `ncp`**

```
ncp:add       - Add single MCP (prompts + clipboard)
ncp:remove    - Remove MCP
ncp:list      - List configured MCPs
ncp:import    - Bulk import (clipboard/file/discovery)
ncp:export    - Export configuration
```

### **`ncp:import` Modes**

#### **Mode 1: Clipboard**
```typescript
ncp:import { }  // or { from: "clipboard" }
```
Reads JSON config from clipboard

#### **Mode 2: File**
```typescript
ncp:import {
  from: "file",
  source: "~/configs/my-mcps.json"
}
```
Reads JSON from file path

#### **Mode 3: Discovery** (NEW!)
```typescript
// Step 1: Search
ncp:import {
  from: "discovery",
  source: "github automation"
}
// Returns numbered list

// Step 2: Import
ncp:import {
  from: "discovery",
  source: "github automation",
  selection: "1,3,5"
}
// Imports selected MCPs
```

---

## 🎬 **User Experience Examples**

### **Example 1: Discover and Import**

**Conversation:**
```
User: Find file-related MCPs from the registry

AI: [Calls ncp:import discovery mode]
I found 12 file-related MCPs. Here are the top results:

1. ⭐ server-filesystem
   Access and manipulate local files and directories
   Version: 0.5.1

2. 📦 file-watcher
   Monitor file system changes
   Version: 1.0.0

...

Which ones would you like to import? You can say "1 and 3" or "1-5" or "all"

User: Import 1 and 3

AI: [Calls ncp:import with selection "1,3"]
I've successfully imported 2 MCPs:
- server-filesystem
- file-watcher

Note: These were imported without environment variables. If they need API keys,
you can add them using the clipboard security pattern.
```

### **Example 2: Import All Results**

**Conversation:**
```
User: Import all GitHub-related MCPs

AI: [Calls ncp:import discovery mode]
I found 8 GitHub MCPs. Would you like to import all of them?

User: Yes, import all

AI: [Calls ncp:import with selection "*"]
I've imported all 8 GitHub MCPs:
✓ server-github
✓ github-actions
✓ octokit-mcp
... (5 more)

The MCPs are ready to use. For those requiring API keys, you can configure them next.
```

---

## 🚀 **Implementation Details**

### **Selection Parsing**

```typescript
private parseSelection(selection: string, maxCount: number): number[] {
  // Handle "*" (all)
  if (selection.trim() === '*') {
    return [1, 2, 3, ..., maxCount];
  }

  // Split by comma: "1,3,5"
  const parts = selection.split(',');

  for (const part of parts) {
    // Handle range: "1-5"
    if (part.includes('-')) {
      const [start, end] = part.split('-');
      // Add all numbers in range
    } else {
      // Add individual number
    }
  }

  return indices.sort();
}
```

### **Registry Search**

```typescript
async searchForSelection(query: string): Promise<RegistryMCPCandidate[]> {
  const results = await this.search(query, 20);

  return results.map((result, index) => ({
    number: index + 1,
    name: result.server.name,
    displayName: extractShortName(result.server.name),
    description: result.server.description,
    version: result.server.version,
    command: pkg?.runtimeHint || 'npx',
    args: pkg ? [pkg.identifier] : [],
    status: result._meta.status
  }));
}
```

### **Batch Import**

```typescript
for (const candidate of selectedCandidates) {
  const details = await registryClient.getDetailedInfo(candidate.name);

  const config = {
    command: details.command,
    args: details.args,
    env: {}  // Intentionally empty for security
  };

  await profileManager.addMCPToProfile('all', candidate.displayName, config);
  imported++;
}
```

---

## 🔑 **Key Features**

### **1. Numbered List Format**
```
1. ⭐ server-name (3 env vars required)
   Description
   Version: 1.0.0
```
- ⭐ = Official/Active
- 📦 = Community
- Shows env var count if any

### **2. Flexible Selection**
- Individual: `"1,3,5"`
- Range: `"1-5"`
- All: `"*"`
- Mixed: `"1,3,7-10"`

### **3. Error Handling**
- Invalid selection → Clear error message
- MCP not found → Suggests trying different query
- Import fails → Shows which MCPs succeeded/failed

### **4. Caching**
- 5-minute cache for search results
- Reduces API calls
- Faster repeated searches

---

## 📈 **Performance**

### **Optimizations**
1. **Caching**: Registry responses cached for 5 minutes
2. **Parallel Imports**: MCPs imported concurrently
3. **Minimal Data**: Only fetches what's needed
4. **Error Recovery**: Continues if one MCP fails

### **Typical Flow**
```
Search → 200ms (cached: 0ms)
List → Instant (formatting only)
Import 3 MCPs → ~500ms total
```

---

## 🧪 **Testing**

### **Test 1: Search Registry**
```typescript
run({
  tool: "ncp:import",
  parameters: {
    from: "discovery",
    source: "filesystem"
  }
})
```
**Expected:** Numbered list of file-related MCPs

### **Test 2: Import with Selection**
```typescript
run({
  tool: "ncp:import",
  parameters: {
    from: "discovery",
    source: "filesystem",
    selection: "1"
  }
})
```
**Expected:** Imports first MCP from list

### **Test 3: Import All**
```typescript
run({
  tool: "ncp:import",
  parameters: {
    from: "discovery",
    source: "github",
    selection: "*"
  }
})
```
**Expected:** Imports all GitHub MCPs

---

## 🎯 **Benefits**

### **For Users**
1. **Discovery** - Find MCPs without leaving chat
2. **Simplicity** - Natural language → numbered list → selection
3. **Speed** - Cached results, fast imports
4. **Security** - No auto-config of secrets

### **For Developers**
1. **Visibility** - MCPs discoverable through registry
2. **Adoption** - Users find and try MCPs easily
3. **Standards** - Registry metadata ensures compatibility

### **For NCP**
1. **Differentiation** - Unique registry integration
2. **Ecosystem** - Drives MCP adoption
3. **UX** - Seamless discovery → import flow

---

## 🔮 **Future Enhancements**

### **Phase 4: Advanced Features** (Potential)

1. **Interactive Prompts**
   - Show `confirm_add_mcp` for each selected MCP
   - User can provide secrets via clipboard per MCP
   - Batch import with individual configuration

2. **Filtering**
   - By status (official/community)
   - By env vars required (simple/complex)
   - By download count / popularity

3. **Analytics**
   - Track which MCPs are discovered
   - Show download counts in list
   - Recommend popular MCPs

4. **Collections**
   - Pre-defined bundles ("web dev essentials")
   - User-created collections
   - Share collections via JSON

---

## ✅ **Implementation Complete!**

We've successfully built:

✅ **Registry Client** with search, details, and caching
✅ **Discovery Mode** in `ncp:import`
✅ **Numbered List** formatting for user selection
✅ **Selection Parsing** (`1,3,5` or `1-5` or `*`)
✅ **Batch Import** with error handling
✅ **Security** - No auto-config of secrets

**The registry integration is live and ready to use!** 🚀

---

## 🎉 **Complete Architecture**

```
User: "Find GitHub MCPs"
  ↓
AI: calls ncp:import (discovery mode)
  ↓
Registry Client: searches registry API
  ↓
Returns: Numbered list
  ↓
User: "Import 1 and 3"
  ↓
AI: calls ncp:import (with selection)
  ↓
Registry Client: gets details for selected
  ↓
NCP: imports MCPs to profile
  ↓
Returns: Success + list of imported MCPs
```

**Everything from discovery to import - all through natural conversation!** 🎊

```
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