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# Directory Structure

```
├── .dockerignore
├── .env.example
├── .gitignore
├── config
│   ├── .eslintrc.json
│   ├── .prettierignore
│   ├── .prettierrc
│   ├── README.md
│   └── tsconfig.dev.json
├── CONTRIBUTING.md
├── docker
│   ├── docker-compose.dev.yml
│   ├── docker-compose.yml
│   ├── Dockerfile.dev
│   └── README.md
├── Dockerfile
├── docs
│   ├── API.md
│   ├── DOCKER.md
│   ├── legacy-tools
│   │   ├── chat.ts
│   │   ├── extract.ts
│   │   ├── files.ts
│   │   ├── README.md
│   │   ├── refactor.ts
│   │   ├── repository.ts
│   │   ├── template.ts
│   │   └── transform.ts
│   ├── MONITORING.md
│   ├── README.md
│   └── SETUP.md
├── examples
│   ├── basic-usage.js
│   └── basic-usage.md
├── LICENSE
├── package-lock.json
├── package.json
├── README.md
├── scripts
│   ├── docker-build.sh
│   ├── docker-logs.sh
│   ├── docker-run.sh
│   ├── monitor.js
│   └── start-mcp.sh
├── src
│   ├── index.ts
│   ├── services
│   │   ├── github.ts
│   │   ├── openai.ts
│   │   └── refactor.ts
│   ├── tools
│   │   └── consolidated.ts
│   ├── types
│   │   ├── index.ts
│   │   └── responses.ts
│   └── utils
│       ├── config.ts
│       ├── file-processor.ts
│       ├── logger.ts
│       ├── monitoring.ts
│       ├── security.ts
│       └── validation.ts
├── tests
│   └── verify-installation.sh
└── tsconfig.json
```

# Files

--------------------------------------------------------------------------------
/config/.prettierrc:
--------------------------------------------------------------------------------

```
 1 | {
 2 |   "semi": true,
 3 |   "singleQuote": true,
 4 |   "tabWidth": 2,
 5 |   "trailingComma": "es5",
 6 |   "printWidth": 100,
 7 |   "bracketSpacing": true,
 8 |   "arrowParens": "avoid",
 9 |   "endOfLine": "lf",
10 |   "quoteProps": "as-needed",
11 |   "bracketSameLine": false,
12 |   "useTabs": false
13 | }
```

--------------------------------------------------------------------------------
/config/.prettierignore:
--------------------------------------------------------------------------------

```
 1 | # Build outputs
 2 | build/
 3 | dist/
 4 | *.tsbuildinfo
 5 | 
 6 | # Dependencies
 7 | node_modules/
 8 | 
 9 | # Logs
10 | *.log
11 | logs/
12 | 
13 | # Environment files
14 | .env*
15 | 
16 | # Documentation
17 | docs/
18 | *.md
19 | !README.md
20 | 
21 | # Test files
22 | tests/
23 | test-results/
24 | coverage/
25 | 
26 | # Config files
27 | *.json
28 | *.yml
29 | *.yaml
30 | 
31 | # Legacy files
32 | docs/legacy-tools/
```

--------------------------------------------------------------------------------
/config/.eslintrc.json:
--------------------------------------------------------------------------------

```json
 1 | {
 2 |   "root": true,
 3 |   "parser": "@typescript-eslint/parser",
 4 |   "parserOptions": {
 5 |     "ecmaVersion": 2022,
 6 |     "sourceType": "module"
 7 |   },
 8 |   "plugins": ["@typescript-eslint"],
 9 |   "extends": [
10 |     "eslint:recommended"
11 |   ],
12 |   "env": {
13 |     "node": true,
14 |     "es2022": true
15 |   },
16 |   "rules": {
17 |     "no-unused-vars": "off",
18 |     "@typescript-eslint/no-unused-vars": ["error", { "argsIgnorePattern": "^_" }],
19 |     "no-console": "off",
20 |     "prefer-const": "error",
21 |     "no-var": "error"
22 |   },
23 |   "ignorePatterns": [
24 |     "build/**",
25 |     "dist/**",
26 |     "node_modules/**",
27 |     "*.js",
28 |     "*.mjs",
29 |     "tests/**",
30 |     "docs/**"
31 |   ]
32 | }
```

--------------------------------------------------------------------------------
/.dockerignore:
--------------------------------------------------------------------------------

```
 1 | # Dependencies
 2 | node_modules/
 3 | npm-debug.log*
 4 | yarn-debug.log*
 5 | yarn-error.log*
 6 | 
 7 | # Build outputs
 8 | build/
 9 | dist/
10 | *.tsbuildinfo
11 | 
12 | # Environment variables
13 | .env
14 | .env.local
15 | .env.development.local
16 | .env.test.local
17 | .env.production.local
18 | 
19 | # IDE and editor files
20 | .vscode/
21 | .idea/
22 | *.swp
23 | *.swo
24 | *~
25 | 
26 | # OS generated files
27 | .DS_Store
28 | .DS_Store?
29 | ._*
30 | .Spotlight-V100
31 | .Trashes
32 | ehthumbs.db
33 | Thumbs.db
34 | 
35 | # Logs
36 | logs/
37 | *.log
38 | 
39 | # Runtime data
40 | pids/
41 | *.pid
42 | *.seed
43 | *.pid.lock
44 | 
45 | # Coverage directory
46 | coverage/
47 | *.lcov
48 | 
49 | # nyc test coverage
50 | .nyc_output
51 | 
52 | # Git
53 | .git
54 | .gitignore
55 | .gitattributes
56 | 
57 | # Documentation (exclude from production image)
58 | docs/
59 | examples/
60 | *.md
61 | !README.md
62 | 
63 | # Test files
64 | tests/
65 | test/
66 | *.test.js
67 | *.test.ts
68 | *.spec.js
69 | *.spec.ts
70 | 
71 | # Development files
72 | .prettierrc
73 | .eslintrc
74 | tsconfig.dev.json
75 | 
76 | # Docker files
77 | Dockerfile
78 | docker-compose.yml
79 | .dockerignore
```

--------------------------------------------------------------------------------
/.gitignore:
--------------------------------------------------------------------------------

```
  1 | # Dependencies
  2 | node_modules/
  3 | npm-debug.log*
  4 | yarn-debug.log*
  5 | yarn-error.log*
  6 | 
  7 | # Build outputs
  8 | build/
  9 | dist/
 10 | *.tsbuildinfo
 11 | 
 12 | # Environment variables
 13 | .env
 14 | .env.local
 15 | .env.development.local
 16 | .env.test.local
 17 | .env.production.local
 18 | 
 19 | # IDE and editor files
 20 | .vscode/
 21 | .idea/
 22 | *.swp
 23 | *.swo
 24 | *~
 25 | 
 26 | # OS generated files
 27 | .DS_Store
 28 | .DS_Store?
 29 | ._*
 30 | .Spotlight-V100
 31 | .Trashes
 32 | ehthumbs.db
 33 | Thumbs.db
 34 | 
 35 | # Logs
 36 | logs/
 37 | *.log
 38 | npm-debug.log*
 39 | yarn-debug.log*
 40 | yarn-error.log*
 41 | lerna-debug.log*
 42 | 
 43 | # Runtime data
 44 | pids/
 45 | *.pid
 46 | *.seed
 47 | *.pid.lock
 48 | 
 49 | # Coverage directory used by tools like istanbul
 50 | coverage/
 51 | *.lcov
 52 | 
 53 | # nyc test coverage
 54 | .nyc_output
 55 | 
 56 | # Dependency directories
 57 | jspm_packages/
 58 | 
 59 | # TypeScript cache
 60 | *.tsbuildinfo
 61 | .tsbuildinfo
 62 | 
 63 | # Optional npm cache directory
 64 | .npm
 65 | 
 66 | # Optional eslint cache
 67 | .eslintcache
 68 | 
 69 | # Microbundle cache
 70 | .rpt2_cache/
 71 | .rts2_cache_cjs/
 72 | .rts2_cache_es/
 73 | .rts2_cache_umd/
 74 | 
 75 | # Optional REPL history
 76 | .node_repl_history
 77 | 
 78 | # Output of 'npm pack'
 79 | *.tgz
 80 | 
 81 | # Yarn Integrity file
 82 | .yarn-integrity
 83 | 
 84 | # dotenv environment variables file
 85 | .env
 86 | .env.test
 87 | 
 88 | # parcel-bundler cache (https://parceljs.org/)
 89 | .cache
 90 | .parcel-cache
 91 | 
 92 | # Next.js build output
 93 | .next
 94 | 
 95 | # Nuxt.js build / generate output
 96 | .nuxt
 97 | dist
 98 | 
 99 | # Gatsby files
100 | .cache/
101 | public
102 | 
103 | # Storybook build outputs
104 | .out
105 | .storybook-out
106 | 
107 | # Temporary folders
108 | tmp/
109 | temp/
110 | 
111 | # API Keys and sensitive files
112 | *.key
113 | *.pem
114 | config/secrets.json
115 | 
116 | # Test results
117 | test-results/
118 | coverage/
119 | 
120 | # Test environment files
121 | **/test-env.js
122 | **/test-config.js
123 | 
124 | # Local development
125 | .local/
126 | local/
```

--------------------------------------------------------------------------------
/.env.example:
--------------------------------------------------------------------------------

```
 1 | # GitHub API Configuration
 2 | # Required for repository analysis
 3 | # Get your token from: https://github.com/settings/tokens
 4 | GITHUB_TOKEN=your_github_token_here
 5 | 
 6 | # Alternative GitHub API key (if different from token)
 7 | GITHUB_API_KEY=your_github_api_key_here
 8 | 
 9 | # OpenAI API Configuration (Optional)
10 | # Required for AI-powered features like chat, explanations, and suggestions
11 | # Get your key from: https://platform.openai.com/api-keys
12 | OPENAI_API_KEY=your_openai_api_key_here
13 | 
14 | # OpenRouter API Configuration (Alternative to OpenAI)
15 | # Provides access to multiple AI models
16 | # Get your key from: https://openrouter.ai/keys
17 | OPENROUTER_API_KEY=your_openrouter_api_key_here
18 | 
19 | # AI Model Configuration
20 | # Default model to use for AI features
21 | # Options: anthropic/claude-3.5-sonnet, openai/gpt-4o, etc.
22 | AI_MODEL=anthropic/claude-3.5-sonnet
23 | 
24 | # Server Configuration
25 | # Port for the MCP server (if running in standalone mode)
26 | MCP_PORT=3001
27 | 
28 | # Debug Configuration
29 | # Enable debug logging
30 | DEBUG=codecompass:*
31 | 
32 | # Cache Configuration
33 | # Cache duration in milliseconds
34 | CACHE_DURATION=3600000
35 | 
36 | # Rate Limiting
37 | # Maximum requests per minute
38 | RATE_LIMIT=100
39 | 
40 | # Security Configuration
41 | # Maximum file size for analysis (in bytes)
42 | MAX_FILE_SIZE=10485760
43 | 
44 | # Maximum total analysis size (in bytes)
45 | MAX_ANALYSIS_SIZE=524288000
46 | 
47 | # Enable/disable security checks
48 | ENABLE_SECURITY_CHECKS=true
49 | 
50 | # Performance Configuration
51 | # Maximum concurrent GitHub API requests
52 | MAX_CONCURRENT_REQUESTS=10
53 | 
54 | # Request timeout in milliseconds
55 | REQUEST_TIMEOUT=30000
56 | 
57 | # Memory limits
58 | # Maximum memory usage for analysis
59 | MAX_MEMORY_USAGE=2048
60 | 
61 | # Logging Configuration
62 | # Log level: error, warn, info, debug, trace
63 | LOG_LEVEL=info
64 | 
65 | # Log file path (optional)
66 | LOG_FILE=./logs/codecompass.log
67 | 
68 | # Feature Flags
69 | # Enable/disable specific features
70 | ENABLE_AI_FEATURES=true
71 | ENABLE_REFACTORING=true
72 | ENABLE_TEMPLATE_GENERATION=true
73 | ENABLE_COMPONENT_EXTRACTION=true
74 | 
75 | # Advanced Configuration
76 | # Custom user agent for GitHub API requests
77 | USER_AGENT=CodeCompass-MCP/1.0.0
78 | 
79 | # Custom base URL for GitHub API (for GitHub Enterprise)
80 | GITHUB_API_BASE_URL=https://api.github.com
81 | 
82 | # Webhook configuration (if using webhooks for updates)
83 | WEBHOOK_SECRET=your_webhook_secret_here
84 | 
85 | # Analytics configuration (optional)
86 | ANALYTICS_ENABLED=false
87 | ANALYTICS_API_KEY=your_analytics_key_here
```

--------------------------------------------------------------------------------
/docker/README.md:
--------------------------------------------------------------------------------

```markdown
 1 | # Docker Configuration
 2 | 
 3 | This directory contains Docker-related files for the CodeCompass MCP project.
 4 | 
 5 | ## Files
 6 | 
 7 | - `Dockerfile.dev` - Development Docker configuration
 8 | - `docker-compose.dev.yml` - Development Docker Compose setup  
 9 | - `docker-compose.yml` - Production Docker Compose setup
10 | 
11 | ## Usage
12 | 
13 | See the main [Docker documentation](../docs/DOCKER.md) for detailed usage instructions.
14 | 
15 | ## Quick Start
16 | 
17 | ```bash
18 | # Development
19 | docker-compose -f docker/docker-compose.dev.yml up
20 | 
21 | # Production  
22 | docker-compose -f docker/docker-compose.yml up
23 | ```
```

--------------------------------------------------------------------------------
/config/README.md:
--------------------------------------------------------------------------------

```markdown
 1 | # Configuration Files
 2 | 
 3 | This directory contains development configuration files for the CodeCompass MCP project.
 4 | 
 5 | ## Files
 6 | 
 7 | - `.eslintrc.json` - ESLint configuration for code linting
 8 | - `.prettierrc` - Prettier configuration for code formatting
 9 | - `.prettierignore` - Files to ignore during formatting
10 | - `tsconfig.dev.json` - TypeScript configuration for development
11 | 
12 | ## Usage
13 | 
14 | These configuration files are automatically used by the npm scripts:
15 | 
16 | ```bash
17 | npm run lint      # Uses .eslintrc.json
18 | npm run format    # Uses .prettierrc
19 | npm run build:dev # Uses tsconfig.dev.json
20 | ```
21 | 
22 | ## Main Configuration
23 | 
24 | The main TypeScript configuration is in the root `tsconfig.json` file.
```

--------------------------------------------------------------------------------
/docs/legacy-tools/README.md:
--------------------------------------------------------------------------------

```markdown
 1 | # Legacy Tool Definitions
 2 | 
 3 | This directory contains the original individual tool definition files that were used before consolidation.
 4 | 
 5 | ## Files
 6 | 
 7 | - `chat.ts` - Chat and AI interaction tools
 8 | - `extract.ts` - Component extraction tools  
 9 | - `files.ts` - File processing tools
10 | - `refactor.ts` - Code refactoring tools
11 | - `repository.ts` - Repository analysis tools
12 | - `template.ts` - Template generation tools
13 | - `transform.ts` - Code transformation tools
14 | 
15 | ## Status
16 | 
17 | These files are **no longer used** in the active codebase. All tool definitions have been consolidated into `src/tools/consolidated.ts` for better maintainability and performance.
18 | 
19 | ## Purpose
20 | 
21 | These files are preserved for:
22 | - Historical reference
23 | - Future modularization if needed
24 | - Tool definition examples
25 | - Documentation purposes
26 | 
27 | ## Note
28 | 
29 | Do not import these files in the active codebase. Use `src/tools/consolidated.ts` instead.
```

--------------------------------------------------------------------------------
/docs/README.md:
--------------------------------------------------------------------------------

```markdown
  1 | # CodeCompass MCP Documentation
  2 | 
  3 | ## 🎯 **Purpose & Value Proposition**
  4 | 
  5 | CodeCompass MCP is an **enterprise-grade Model Context Protocol (MCP) Server** that provides intelligent repository analysis, code understanding, and AI-powered development assistance. It bridges development tools with comprehensive GitHub repository analysis capabilities, offering 18 specialized tools for code exploration, documentation generation, and architectural insights.
  6 | 
  7 | ## 🏗️ **Architecture Overview**
  8 | 
  9 | ### **Core Design Pattern: Service-Oriented Architecture**
 10 | ```typescript
 11 | // High-level flow
 12 | MCP Client → MCP Server → Service Layer → External APIs (GitHub, OpenRouter)
 13 | ```
 14 | 
 15 | The system implements a **Service-Oriented Architecture** with clear separation of concerns, enhanced error handling, and production-ready monitoring.
 16 | 
 17 | ### **Component Architecture**
 18 | 
 19 | #### 1. **MCP Server Layer** (`src/index.ts`)
 20 | ```typescript
 21 | // JSON-RPC MCP Protocol Handler
 22 | server.setRequestHandler(CallToolRequestSchema, async (request) => {
 23 |   const { name, arguments: args } = request.params;
 24 |   const requestId = monitoring.generateRequestId();
 25 |   
 26 |   // Routes to appropriate handlers with monitoring
 27 |   return await handleTool(name, args, requestId);
 28 | });
 29 | ```
 30 | 
 31 | **Key Responsibilities:**
 32 | - JSON-RPC protocol compliance
 33 | - Tool registration and routing (18 tools)
 34 | - Enhanced error handling with contextual messages
 35 | - Request monitoring and performance tracking
 36 | - Response size management with chunking
 37 | 
 38 | #### 2. **Service Layer** (`src/services/`)
 39 | ```typescript
 40 | // GitHub API integration
 41 | class GitHubService {
 42 |   async getRepositoryInfo(url: string): Promise<RepositoryInfo> {
 43 |     // Smart rate limiting and caching
 44 |     return await this.fetchWithRateLimit(url);
 45 |   }
 46 | }
 47 | 
 48 | // OpenRouter integration
 49 | class OpenAIService {
 50 |   async generateCodeReview(code: string, language: string): Promise<ReviewResult> {
 51 |     // AI-powered analysis with configurable models
 52 |     return await this.callOpenRouter(code, language);
 53 |   }
 54 | }
 55 | ```
 56 | 
 57 | **Design Features:**
 58 | - Rate limiting and API management
 59 | - Intelligent caching strategies
 60 | - Error recovery and retry logic
 61 | - Multi-provider AI integration
 62 | 
 63 | #### 3. **Configuration Management** (`src/utils/config.ts`)
 64 | ```typescript
 65 | // Centralized configuration with validation
 66 | interface Config {
 67 |   github: { token: string; apiUrl: string };
 68 |   openrouter: { apiKey: string; defaultModel: string };
 69 |   response: { maxTokens: number; chunkSizes: ChunkSizes };
 70 |   logging: { level: string; enableTimestamps: boolean };
 71 | }
 72 | 
 73 | // Environment-based configuration
 74 | const config = ConfigSchema.parse(loadConfigFromEnv());
 75 | ```
 76 | 
 77 | **Design Features:**
 78 | - Zod schema validation
 79 | - Environment variable mapping
 80 | - Smart defaults and warnings
 81 | - Type-safe configuration access
 82 | 
 83 | #### 4. **Monitoring & Observability** (`src/utils/monitoring.ts`)
 84 | ```typescript
 85 | // Real-time performance monitoring
 86 | class MonitoringService {
 87 |   startRequest(tool: string, requestId: string): void {
 88 |     this.metrics.requestCount++;
 89 |     this.trackPerformance(tool, requestId);
 90 |   }
 91 |   
 92 |   getHealthStatus(): HealthStatus {
 93 |     return {
 94 |       status: this.calculateOverallHealth(),
 95 |       checks: this.runHealthChecks(),
 96 |       insights: this.generateInsights()
 97 |     };
 98 |   }
 99 | }
100 | ```
101 | 
102 | **Key Features:**
103 | - Request tracking with correlation IDs
104 | - Performance metrics and insights
105 | - Health monitoring with thresholds
106 | - Real-time dashboard capabilities
107 | 
108 | ## 🔧 **Key Design Patterns**
109 | 
110 | ### **1. Strategy Pattern - Response Size Management**
111 | ```typescript
112 | function formatToolResponse(
113 |   response: ToolResponse<T>,
114 |   chunkMode: boolean = false,
115 |   chunkSize: string = 'medium'
116 | ) {
117 |   if (chunkMode) {
118 |     return chunkResponse(response, chunkSize);
119 |   } else {
120 |     return truncateResponse(response, maxTokens);
121 |   }
122 | }
123 | ```
124 | 
125 | ### **2. Command Pattern - Tool Registration**
126 | ```typescript
127 | const toolHandlers = {
128 |   'fetch_repository_data': handleFetchRepositoryData,
129 |   'search_repository': handleSearchRepository,
130 |   'ai_code_review': handleAICodeReview,
131 |   'health_check': handleHealthCheck
132 | };
133 | ```
134 | 
135 | ### **3. Factory Pattern - Error Response Creation**
136 | ```typescript
137 | function createResponse<T>(data: T, error?: any, metadata?: any): ToolResponse<T> {
138 |   if (error) {
139 |     return {
140 |       success: false,
141 |       error: {
142 |         code: error.code || ErrorCodes.PROCESSING_ERROR,
143 |         message: error.message,
144 |         suggestion: generateSuggestion(error),
145 |         timestamp: new Date().toISOString(),
146 |         context: metadata
147 |       }
148 |     };
149 |   }
150 |   return { success: true, data, metadata };
151 | }
152 | ```
153 | 
154 | ### **4. Observer Pattern - Request Monitoring**
155 | ```typescript
156 | // Automatic request tracking
157 | const monitoredHandler = monitorTool('tool_name', async (args) => {
158 |   // Tool logic with automatic performance tracking
159 |   return await processRequest(args);
160 | });
161 | ```
162 | 
163 | ## 🚀 **Usage Examples**
164 | 
165 | ### **Basic Repository Analysis**
166 | ```bash
167 | # Analyze repository structure and dependencies
168 | {
169 |   "name": "fetch_repository_data",
170 |   "arguments": {
171 |     "url": "https://github.com/owner/repo",
172 |     "options": {
173 |       "include_structure": true,
174 |       "include_dependencies": true,
175 |       "max_files": 50
176 |     }
177 |   }
178 | }
179 | ```
180 | 
181 | ### **AI-Powered Code Review**
182 | ```bash
183 | # Get intelligent code insights
184 | {
185 |   "name": "ai_code_review",
186 |   "arguments": {
187 |     "url": "https://github.com/owner/repo",
188 |     "file_paths": ["src/main.ts", "src/utils.ts"],
189 |     "review_focus": ["security", "performance", "maintainability"],
190 |     "options": {
191 |       "ai_model": "anthropic/claude-3.5-sonnet"
192 |     }
193 |   }
194 | }
195 | ```
196 | 
197 | ### **Batch File Processing**
198 | ```bash
199 | # Process multiple files with security validation
200 | {
201 |   "name": "get_file_content",
202 |   "arguments": {
203 |     "url": "https://github.com/owner/repo",
204 |     "file_paths": ["src/", "docs/", "tests/"],
205 |     "options": {
206 |       "max_concurrent": 10,
207 |       "include_metadata": true,
208 |       "continue_on_error": true
209 |     }
210 |   }
211 | }
212 | ```
213 | 
214 | ### **Health Monitoring**
215 | ```bash
216 | # Comprehensive system health check
217 | {
218 |   "name": "health_check",
219 |   "arguments": {
220 |     "checks": ["api-limits", "monitoring", "configuration"],
221 |     "options": {
222 |       "include_metrics": true,
223 |       "include_insights": true,
224 |       "include_logs": true
225 |     }
226 |   }
227 | }
228 | ```
229 | 
230 | ## 🐳 **Deployment Architecture**
231 | 
232 | ### **Docker-First Design**
233 | ```dockerfile
234 | # Production-ready container
235 | FROM node:18-alpine AS runtime
236 | RUN addgroup -g 1001 -S nodejs && \
237 |     adduser -S codecompass -u 1001
238 | USER codecompass
239 | WORKDIR /app
240 | 
241 | # Health check integration
242 | HEALTHCHECK --interval=30s --timeout=3s --start-period=5s --retries=3 \
243 |   CMD node -e "console.log('Health check passed')" || exit 1
244 | ```
245 | 
246 | **Key Features:**
247 | - Non-root execution for security
248 | - Multi-stage builds for optimization
249 | - Health check integration
250 | - Environment variable configuration
251 | - Resource limits and monitoring
252 | 
253 | ### **MCP Integration Commands**
254 | ```bash
255 | # Docker deployment
256 | ./scripts/docker-build.sh
257 | ./scripts/docker-run.sh --env-file .env
258 | 
259 | # Local development
260 | npm run dev
261 | 
262 | # Production monitoring
263 | ./scripts/monitor.js --watch
264 | ```
265 | 
266 | ## 💡 **Integration Patterns**
267 | 
268 | ### **For Your Projects**
269 | 
270 | #### **1. MCP Server Template**
271 | ```typescript
272 | // Adaptable MCP server structure
273 | class CustomMCPServer {
274 |   constructor() {
275 |     this.tools = this.registerTools();
276 |     this.monitoring = new MonitoringService();
277 |     this.config = getConfig();
278 |   }
279 |   
280 |   registerTools() {
281 |     return {
282 |       'custom_tool': {
283 |         description: 'Your custom functionality',
284 |         inputSchema: {
285 |           type: 'object',
286 |           properties: { /* your schema */ }
287 |         }
288 |       }
289 |     };
290 |   }
291 | }
292 | ```
293 | 
294 | #### **2. Service Integration Pattern**
295 | ```typescript
296 | // Reusable pattern for external API integration
297 | class ExternalAPIService {
298 |   constructor(private config: APIConfig) {
299 |     this.client = new APIClient(config);
300 |   }
301 |   
302 |   async makeRequest<T>(endpoint: string, data: any): Promise<T> {
303 |     const timer = createPerformanceTimer(`${this.name}-${endpoint}`);
304 |     try {
305 |       const result = await this.client.request(endpoint, data);
306 |       timer.end({ success: true });
307 |       return result;
308 |     } catch (error) {
309 |       timer.end({ success: false, error: error.message });
310 |       throw error;
311 |     }
312 |   }
313 | }
314 | ```
315 | 
316 | #### **3. Configuration Management**
317 | ```typescript
318 | // Environment-based configuration pattern
319 | import { z } from 'zod';
320 | 
321 | const ConfigSchema = z.object({
322 |   apiKey: z.string().min(1),
323 |   baseUrl: z.string().url(),
324 |   maxRetries: z.number().default(3)
325 | });
326 | 
327 | export function createConfig(): Config {
328 |   const envConfig = {
329 |     apiKey: process.env.API_KEY,
330 |     baseUrl: process.env.BASE_URL,
331 |     maxRetries: parseInt(process.env.MAX_RETRIES || '3')
332 |   };
333 |   
334 |   return ConfigSchema.parse(envConfig);
335 | }
336 | ```
337 | 
338 | ## 🔍 **Code Quality Insights**
339 | 
340 | ### **Strengths**
341 | - **Type Safety**: Full TypeScript implementation with strict types
342 | - **Error Handling**: Comprehensive error recovery with contextual messages
343 | - **Monitoring**: Real-time performance tracking and health checks
344 | - **Security**: Input validation and path traversal prevention
345 | - **Docker Integration**: Production-ready containerization
346 | - **Documentation**: Comprehensive API documentation and examples
347 | 
348 | ### **Advanced Features**
349 | ```typescript
350 | // Enhanced error handling with suggestions
351 | function createErrorResponse(error: Error, context?: ErrorContext): ErrorResponse {
352 |   const suggestions = generateContextualSuggestions(error, context);
353 |   return {
354 |     code: error.code,
355 |     message: error.message,
356 |     suggestion: suggestions.primary,
357 |     timestamp: new Date().toISOString(),
358 |     context: {
359 |       tool: context?.tool,
360 |       url: context?.url,
361 |       requestId: context?.requestId
362 |     }
363 |   };
364 | }
365 | 
366 | // Intelligent response chunking
367 | function chunkResponse<T>(response: T, chunkSize: ChunkSize): ChunkedResponse<T> {
368 |   const limits = getChunkLimits(chunkSize);
369 |   return {
370 |     data: truncateToLimits(response, limits),
371 |     metadata: {
372 |       chunkIndex: 0,
373 |       totalChunks: calculateTotalChunks(response, limits),
374 |       hasMore: hasMoreChunks(response, limits)
375 |     }
376 |   };
377 | }
378 | ```
379 | 
380 | ## 🎯 **Adaptation Strategies**
381 | 
382 | ### **For Different Use Cases**
383 | 1. **Extend the service layer** for new data sources
384 | 2. **Add custom tool implementations** following the established patterns
385 | 3. **Implement provider-specific configurations** for different APIs
386 | 
387 | ### **For Different Environments**
388 | 1. **Kubernetes deployment** with provided Helm charts
389 | 2. **Serverless adaptation** with AWS Lambda or Vercel
390 | 3. **Local development** with hot-reload support
391 | 
392 | ### **For Different Protocols**
393 | 1. **Abstract the protocol layer** (MCP → GraphQL, REST, etc.)
394 | 2. **Maintain the service architecture** core
395 | 3. **Adapt the tool registration** system for different schemas
396 | 
397 | ## 🎨 **Tool Categories**
398 | 
399 | ### **Core Data Tools (6 tools)**
400 | - `fetch_repository_data` - Comprehensive repository analysis
401 | - `search_repository` - Advanced search with regex support
402 | - `get_file_content` - Batch file processing with security
403 | - `analyze_code_structure` - Code structure analysis
404 | - `analyze_dependencies` - Dependency graph analysis
405 | - `calculate_metrics` - Code quality metrics
406 | 
407 | ### **Code Transformation Tools (4 tools)**
408 | - `transform_code` - Code transformation and migration
409 | - `extract_components` - Component extraction
410 | - `adapt_code_structure` - Structure adaptation
411 | - `generate_project_template` - Template generation
412 | 
413 | ### **Analysis Tools (3 tools)**
414 | - `analyze_architecture` - Architecture analysis
415 | - `compare_implementations` - Implementation comparison
416 | - `validate_code_quality` - Quality validation
417 | 
418 | ### **Utility Tools (2 tools)**
419 | - `batch_process` - Batch operation processing
420 | - `health_check` - System health monitoring
421 | 
422 | ### **AI-Enhanced Tools (3 tools)**
423 | - `ai_code_review` - AI-powered code review
424 | - `ai_explain_code` - AI code explanation
425 | - `ai_refactor_suggestions` - AI refactoring suggestions
426 | 
427 | ## 📊 **Performance Characteristics**
428 | 
429 | ### **Response Times**
430 | - **Health Check**: <100ms
431 | - **Repository Analysis**: 2-10s (depending on size)
432 | - **AI Operations**: 5-30s (model dependent)
433 | - **File Processing**: 1-5s (concurrent processing)
434 | 
435 | ### **Resource Usage**
436 | - **Memory**: 50-200MB (depending on repository size)
437 | - **CPU**: Minimal (I/O bound operations)
438 | - **Network**: Efficient with rate limiting and caching
439 | 
440 | ### **Scalability**
441 | - **Concurrent Requests**: Configurable limits
442 | - **Response Size**: Intelligent chunking
443 | - **Memory Management**: Efficient buffering
444 | - **Docker Support**: Horizontal scaling ready
445 | 
446 | This repository demonstrates excellent **architectural patterns** for building **enterprise-grade MCP servers** with **production-ready deployment** capabilities, **comprehensive monitoring**, and **intelligent error handling**.
447 | 
448 | ## 🔗 **Related Documentation**
449 | 
450 | - [Setup Guide](SETUP.md) - Installation and configuration
451 | - [API Reference](API.md) - Complete tool documentation
452 | - [Docker Guide](DOCKER.md) - Container deployment
453 | - [Monitoring Guide](MONITORING.md) - Observability and metrics
454 | - [Contributing Guide](../CONTRIBUTING.md) - Development guidelines
```

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/README.md:
--------------------------------------------------------------------------------

```markdown
  1 | # CodeCompass MCP
  2 | 
  3 | [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
  4 | [![Node.js Version](https://img.shields.io/badge/node-18%2B-brightgreen)](https://nodejs.org/)
  5 | [![Docker](https://img.shields.io/badge/docker-supported-blue)](https://www.docker.com/)
  6 | [![TypeScript](https://img.shields.io/badge/typescript-5.8%2B-blue)](https://www.typescriptlang.org/)
  7 | 
  8 | **Enterprise-grade Model Context Protocol (MCP) Server for intelligent repository analysis and AI-powered development assistance.**
  9 | 
 10 | Connect your development tools to comprehensive GitHub repository analysis with 11 streamlined tools, enhanced error handling, real-time monitoring, and production-ready deployment.
 11 | 
 12 | ## ✨ **Features**
 13 | 
 14 | - 🔍 **Comprehensive Repository Analysis** - Deep insights into code structure, dependencies, and architecture
 15 | - 🤖 **AI-Powered Code Review** - Intelligent code analysis with OpenRouter integration (400+ models)
 16 | - 🚀 **Production-Ready Deployment** - Docker containers with security best practices
 17 | - 📊 **Real-time Monitoring** - Performance metrics, health checks, and observability
 18 | - 🛡️ **Enterprise Security** - Input validation, path traversal prevention, and secure processing
 19 | - ⚡ **High Performance** - Intelligent chunking, concurrent processing, and response optimization
 20 | - 🔧 **Developer Experience** - Comprehensive documentation, examples, and debugging tools
 21 | 
 22 | ## 🚀 **Quick Start**
 23 | 
 24 | ### **Step-by-Step Docker Setup (Recommended)**
 25 | 
 26 | #### 1. **Clone and Navigate**
 27 | ```bash
 28 | git clone https://github.com/TheAlchemist6/codecompass-mcp.git
 29 | cd codecompass-mcp
 30 | ```
 31 | **Expected output:**
 32 | ```
 33 | Cloning into 'codecompass-mcp'...
 34 | remote: Enumerating objects: 53, done.
 35 | remote: Total 53 (delta 0), reused 0 (delta 0), pack-reused 53
 36 | Receiving objects: 100% (53/53), 259.84 KiB | 1.85 MiB/s, done.
 37 | ```
 38 | 
 39 | #### 2. **Configure Environment**
 40 | ```bash
 41 | cp .env.example .env
 42 | # Edit .env with your real API keys
 43 | nano .env  # or use your preferred editor
 44 | ```
 45 | 
 46 | **Required in `.env` file:**
 47 | ```bash
 48 | GITHUB_TOKEN=ghp_your_actual_github_token_here
 49 | OPENROUTER_API_KEY=sk-or-v1-your_actual_openrouter_key_here
 50 | ```
 51 | 
 52 | **🔑 Where to get API keys:**
 53 | - **GitHub Token**: [github.com/settings/tokens](https://github.com/settings/tokens) → Generate new token (classic) → Select `repo` scope
 54 | - **OpenRouter Key**: [openrouter.ai/keys](https://openrouter.ai/keys) → Create new API key
 55 | 
 56 | #### 3. **Build and Run**
 57 | ```bash
 58 | ./scripts/docker-build.sh
 59 | ./scripts/docker-run.sh --env-file .env
 60 | ```
 61 | **Expected output:**
 62 | ```
 63 | ✅ Build successful
 64 | Image information:
 65 | REPOSITORY        TAG       IMAGE ID       CREATED         SIZE
 66 | codecompass-mcp   latest    a1b2c3d4e5f6   2 seconds ago   278MB
 67 | 
 68 | 🚀 Starting CodeCompass MCP server...
 69 | ✅ Server started successfully
 70 | Health check: healthy
 71 | API limits: 5000/hour remaining
 72 | ```
 73 | 
 74 | #### 4. **Test Installation**
 75 | ```bash
 76 | # Test with health check
 77 | echo '{"jsonrpc": "2.0", "id": 1, "method": "tools/call", "params": {"name": "health_check"}}' | docker exec -i codecompass-mcp node build/index.js
 78 | ```
 79 | 
 80 | ### **Platform Support**
 81 | - ✅ **Linux** (Ubuntu 18.04+, CentOS 7+)
 82 | - ✅ **macOS** (10.14+, Intel & Apple Silicon)
 83 | - ✅ **Windows** (10/11 with Docker Desktop)
 84 | 
 85 | ### **Alternative Installation Methods**
 86 | 
 87 | #### **Local Development**
 88 | ```bash
 89 | # Install dependencies
 90 | npm install
 91 | 
 92 | # Set environment variables
 93 | export GITHUB_TOKEN=your_github_token
 94 | export OPENROUTER_API_KEY=your_openrouter_key
 95 | 
 96 | # Build and run
 97 | npm run build && npm run dev
 98 | ```
 99 | 
100 | #### **Global Installation**
101 | ```bash
102 | npm install -g codecompass-mcp
103 | codecompass-mcp --help
104 | ```
105 | 
106 | ## 🔧 **Configuration**
107 | 
108 | ### **Required Environment Variables**
109 | ```bash
110 | GITHUB_TOKEN=ghp_your_github_token_here        # GitHub API access
111 | OPENROUTER_API_KEY=sk-or-v1-your_key_here     # OpenRouter API access
112 | ```
113 | 
114 | ### **Optional Configuration**
115 | ```bash
116 | AI_MODEL=anthropic/claude-3.5-sonnet          # Default AI model
117 | MAX_RESPONSE_TOKENS=25000                      # Response size limit
118 | LOG_LEVEL=info                                 # Logging level
119 | NODE_ENV=production                            # Environment mode
120 | ```
121 | 
122 | ## 🛠️ **Available Tools**
123 | 
124 | ### **Core Data Tools (6 tools)**
125 | - **`get_repository_info`** - Repository metadata, statistics, and key information
126 | - **`get_file_tree`** - Complete directory structure and file listing with filtering
127 | - **`search_repository`** - Advanced search with regex patterns and filtering
128 | - **`get_file_content`** - Batch file processing with security validation and metadata
129 | - **`analyze_dependencies`** - Dependency graph analysis and vulnerability detection
130 | - **`analyze_codebase`** - Comprehensive structure, architecture, and metrics analysis
131 | 
132 | ### **AI-Enhanced Tools (3 tools)**
133 | - **`review_code`** - AI-powered code review with security, performance, and maintainability insights
134 | - **`explain_code`** - Natural language code explanations and documentation generation
135 | - **`suggest_improvements`** - Intelligent refactoring recommendations and modernization strategies
136 | 
137 | ### **Transformation Tools (1 tool)**
138 | - **`transform_code`** - Code transformation, modernization, and migration assistance
139 | 
140 | ### **Utility Tools (1 tool)**
141 | - **`health_check`** - System health monitoring and performance metrics
142 | 
143 | ## 🐳 **Docker Integration**
144 | 
145 | ### **Production Deployment**
146 | ```bash
147 | # Build production image
148 | ./scripts/docker-build.sh
149 | 
150 | # Run with environment file
151 | ./scripts/docker-run.sh --env-file .env
152 | 
153 | # View logs
154 | ./scripts/docker-logs.sh -f --timestamps
155 | ```
156 | 
157 | ### **Docker Compose**
158 | ```yaml
159 | version: '3.8'
160 | services:
161 |   codecompass-mcp:
162 |     build: .
163 |     container_name: codecompass-mcp
164 |     restart: unless-stopped
165 |     environment:
166 |       - GITHUB_TOKEN=${GITHUB_TOKEN}
167 |       - OPENROUTER_API_KEY=${OPENROUTER_API_KEY}
168 |       - NODE_ENV=production
169 |     healthcheck:
170 |       test: ["CMD", "node", "-e", "console.log('Health check')"]
171 |       interval: 30s
172 |       timeout: 10s
173 |       retries: 3
174 | ```
175 | 
176 | ### **MCP Client Integration**
177 | 
178 | #### **Claude Desktop Configuration**
179 | Add to your Claude Desktop configuration file:
180 | 
181 | **macOS**: `~/Library/Application Support/Claude/claude_desktop_config.json`
182 | **Windows**: `%APPDATA%\Claude\claude_desktop_config.json`
183 | 
184 | ```json
185 | {
186 |   "mcpServers": {
187 |     "codecompass": {
188 |       "command": "docker",
189 |       "args": [
190 |         "exec", "-i", "codecompass-mcp", 
191 |         "node", "build/index.js"
192 |       ],
193 |       "env": {
194 |         "GITHUB_TOKEN": "your_github_token_here",
195 |         "OPENROUTER_API_KEY": "your_openrouter_key_here"
196 |       }
197 |     }
198 |   }
199 | }
200 | ```
201 | 
202 | **Then restart Claude Desktop** and you'll see CodeCompass tools available in the UI.
203 | 
204 | #### **Claude Code CLI Integration**
205 | ```bash
206 | # Add MCP server to Claude Code
207 | claude mcp add codecompass-docker -s user -- \
208 |   docker exec -i codecompass-mcp node build/index.js
209 | ```
210 | 
211 | #### **Other MCP Clients**
212 | - **Cline** (VS Code): Add to MCP configuration
213 | - **Continue** (VS Code/JetBrains): Configure as MCP provider
214 | - **Custom clients**: Use `stdio` transport with `node build/index.js`
215 | 
216 | #### **Testing Integration**
217 | ```bash
218 | # Test the connection
219 | echo '{"jsonrpc": "2.0", "id": 1, "method": "tools/list"}' | docker exec -i codecompass-mcp node build/index.js
220 | 
221 | # Should return list of 11 tools
222 | ```
223 | 
224 | ## 📊 **Monitoring & Observability**
225 | 
226 | ### **Real-time Dashboard**
227 | ```bash
228 | # Interactive monitoring dashboard
229 | ./scripts/monitor.js --watch
230 | 
231 | # Export metrics
232 | ./scripts/monitor.js --export > metrics.json
233 | 
234 | # Health check
235 | curl -X POST http://localhost:3000/health
236 | ```
237 | 
238 | ### **Performance Metrics**
239 | - **Response Times**: <100ms for health checks, 2-10s for repository analysis
240 | - **Memory Usage**: 50-200MB depending on repository size
241 | - **Concurrent Processing**: Configurable limits with automatic scaling
242 | - **Error Tracking**: Comprehensive error monitoring with contextual suggestions
243 | 
244 | ### **Health Monitoring**
245 | ```json
246 | {
247 |   "name": "health_check",
248 |   "arguments": {
249 |     "checks": ["api-limits", "monitoring", "configuration"],
250 |     "options": {
251 |       "include_metrics": true,
252 |       "include_insights": true
253 |     }
254 |   }
255 | }
256 | ```
257 | 
258 | ## 🔍 **Usage Examples**
259 | 
260 | ### **Repository Analysis**
261 | ```json
262 | {
263 |   "name": "fetch_repository_data",
264 |   "arguments": {
265 |     "url": "https://github.com/microsoft/typescript",
266 |     "options": {
267 |       "include_structure": true,
268 |       "include_dependencies": true,
269 |       "max_files": 100,
270 |       "chunk_mode": true
271 |     }
272 |   }
273 | }
274 | ```
275 | 
276 | ### **AI Code Review**
277 | ```json
278 | {
279 |   "name": "ai_code_review",
280 |   "arguments": {
281 |     "url": "https://github.com/your-org/your-repo",
282 |     "file_paths": ["src/main.ts", "src/utils/"],
283 |     "review_focus": ["security", "performance", "maintainability"],
284 |     "options": {
285 |       "ai_model": "anthropic/claude-3.5-sonnet",
286 |       "severity_threshold": "medium"
287 |     }
288 |   }
289 | }
290 | ```
291 | 
292 | ### **Batch File Processing**
293 | ```json
294 | {
295 |   "name": "get_file_content",
296 |   "arguments": {
297 |     "url": "https://github.com/your-org/your-repo",
298 |     "file_paths": ["src/", "docs/", "tests/"],
299 |     "options": {
300 |       "max_concurrent": 10,
301 |       "include_metadata": true,
302 |       "continue_on_error": true
303 |     }
304 |   }
305 | }
306 | ```
307 | 
308 | ## 🏗️ **Architecture**
309 | 
310 | ### **Service-Oriented Design**
311 | ```
312 | MCP Client → MCP Server → Service Layer → External APIs
313 |             ↓
314 |          Monitoring & Logging
315 | ```
316 | 
317 | ### **Key Components**
318 | - **MCP Server**: JSON-RPC protocol handling with 11 streamlined tools
319 | - **Service Layer**: GitHub API, OpenRouter integration, and business logic
320 | - **Configuration**: Centralized, type-safe configuration with Zod validation
321 | - **Monitoring**: Real-time performance tracking and health monitoring
322 | - **Security**: Input validation, path traversal prevention, and secure processing
323 | 
324 | ## 🔒 **Security Features**
325 | 
326 | ### **Input Validation**
327 | - **Zod Schema Validation**: Type-safe input validation for all tools
328 | - **Path Traversal Prevention**: Comprehensive file path security checks
329 | - **Rate Limiting**: Configurable request rate limiting and throttling
330 | - **API Key Management**: Secure environment variable handling
331 | 
332 | ### **Container Security**
333 | - **Non-root Execution**: All containers run as unprivileged users
334 | - **Read-only Filesystems**: Security-focused container configuration
335 | - **Resource Limits**: Memory and CPU constraints for stability
336 | - **Health Checks**: Automated health monitoring and recovery
337 | 
338 | ## 🎯 **Performance Optimization**
339 | 
340 | ### **Intelligent Response Management**
341 | - **Chunking**: Large responses split into manageable chunks
342 | - **Truncation**: Smart truncation preserving data structure
343 | - **Concurrent Processing**: Parallel file processing with configurable limits
344 | - **Caching**: Intelligent caching strategies for frequently accessed data
345 | 
346 | ### **Resource Management**
347 | - **Memory Efficiency**: Optimized memory usage with automatic cleanup
348 | - **Request Tracking**: Correlation IDs for distributed tracing
349 | - **Performance Insights**: Automated performance analysis and recommendations
350 | - **Scalability**: Horizontal scaling ready with Docker containers
351 | 
352 | ## 📚 **Documentation**
353 | 
354 | ### **Complete Documentation Suite**
355 | - **[Setup Guide](docs/SETUP.md)** - Installation and configuration instructions
356 | - **[API Reference](docs/API.md)** - Complete tool documentation with examples
357 | - **[Docker Guide](docs/DOCKER.md)** - Container deployment and management
358 | - **[Monitoring Guide](docs/MONITORING.md)** - Observability and performance monitoring
359 | - **[Architecture Guide](docs/README.md)** - Technical architecture and patterns
360 | 
361 | ### **Examples and Templates**
362 | - **[Usage Examples](examples/)** - Real-world usage patterns and templates
363 | - **[Integration Examples](examples/integrations/)** - MCP client integration examples
364 | - **[Configuration Templates](examples/configs/)** - Production-ready configuration examples
365 | 
366 | ## 🤝 **Contributing**
367 | 
368 | We welcome contributions! Please see our [Contributing Guide](CONTRIBUTING.md) for details on:
369 | - Development setup and workflow
370 | - Code style and testing requirements
371 | - Pull request process and guidelines
372 | - Bug reporting and feature requests
373 | 
374 | ### **Development Setup**
375 | ```bash
376 | # Clone and setup
377 | git clone https://github.com/your-org/codecompass-mcp.git
378 | cd codecompass-mcp
379 | 
380 | # Install dependencies
381 | npm install
382 | 
383 | # Run tests
384 | npm test
385 | 
386 | # Start development server
387 | npm run dev:watch
388 | ```
389 | 
390 | ## 🔄 **Roadmap**
391 | 
392 | ### **Current Version (1.0.0)**
393 | - ✅ 11 streamlined, atomic tools with clear responsibilities
394 | - ✅ Production-ready Docker deployment
395 | - ✅ Real-time monitoring and observability
396 | - ✅ Enterprise security features
397 | - ✅ Complete documentation suite
398 | 
399 | ### **Future Enhancements**
400 | - 🔮 **Conversational Context Management** - Session state and conversation history
401 | - 🔮 **Advanced Caching** - Redis-based caching with intelligent invalidation
402 | - 🔮 **Plugin System** - Extensible architecture for custom tools
403 | - 🔮 **Multi-language Support** - Expanded language support beyond TypeScript/JavaScript
404 | - 🔮 **Kubernetes Integration** - Native Kubernetes deployment with Helm charts
405 | 
406 | ## 📄 **License**
407 | 
408 | This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.
409 | 
410 | ## 🙏 **Acknowledgments**
411 | 
412 | - **OpenRouter MCP** - Architecture patterns and best practices inspiration
413 | - **MCP Protocol** - Foundation for tool integration and communication
414 | - **Anthropic** - Claude AI integration and development support
415 | - **GitHub** - Repository analysis and API integration
416 | - **Docker** - Containerization and deployment infrastructure
417 | 
418 | ## 🆘 **Support**
419 | 
420 | ### **Getting Help**
421 | - **Documentation**: Check our comprehensive documentation in the `docs/` directory
422 | - **Issues**: Report bugs and request features on [GitHub Issues](https://github.com/your-org/codecompass-mcp/issues)
423 | - **Discussions**: Join community discussions on [GitHub Discussions](https://github.com/your-org/codecompass-mcp/discussions)
424 | 
425 | ### **Common Issues**
426 | - **API Key Setup**: See [Setup Guide](docs/SETUP.md#api-key-setup)
427 | - **Docker Issues**: Check [Docker Guide](docs/DOCKER.md#troubleshooting)
428 | - **Performance**: Review [Monitoring Guide](docs/MONITORING.md#performance-optimization)
429 | 
430 | ## 🚀 **Built With**
431 | 
432 | - **[TypeScript](https://www.typescriptlang.org/)** - Type-safe JavaScript development
433 | - **[Node.js](https://nodejs.org/)** - JavaScript runtime environment
434 | - **[Docker](https://www.docker.com/)** - Containerization platform
435 | - **[Zod](https://zod.dev/)** - TypeScript-first schema validation
436 | - **[MCP SDK](https://github.com/modelcontextprotocol/typescript-sdk)** - Model Context Protocol implementation
437 | 
438 | ---
439 | 
440 | **Made with 💜 by Myron Labs**
441 | 
442 | *Transform your development workflow with intelligent repository analysis and AI-powered code insights.*
```

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/CONTRIBUTING.md:
--------------------------------------------------------------------------------

```markdown
  1 | # Contributing to CodeCompass MCP
  2 | 
  3 | Thank you for your interest in contributing to CodeCompass MCP! This document provides guidelines and information for contributors.
  4 | 
  5 | ## 🤝 How to Contribute
  6 | 
  7 | ### Reporting Issues
  8 | 
  9 | 1. **Search existing issues** to avoid duplicates
 10 | 2. **Use the issue template** when creating new issues
 11 | 3. **Provide detailed information**:
 12 |    - Steps to reproduce
 13 |    - Expected vs actual behavior
 14 |    - Environment details (Node.js version, OS, etc.)
 15 |    - Error messages and logs
 16 | 
 17 | ### Suggesting Features
 18 | 
 19 | 1. **Check existing feature requests** in issues
 20 | 2. **Describe the use case** and problem being solved
 21 | 3. **Provide examples** of how the feature would be used
 22 | 4. **Consider implementation complexity** and maintenance burden
 23 | 
 24 | ### Pull Requests
 25 | 
 26 | 1. **Fork the repository** and create a feature branch
 27 | 2. **Follow the development setup** instructions below
 28 | 3. **Make your changes** with appropriate tests
 29 | 4. **Update documentation** if needed
 30 | 5. **Submit a pull request** with a clear description
 31 | 
 32 | ## 🛠️ Development Setup
 33 | 
 34 | ### Prerequisites
 35 | 
 36 | - Node.js 18+
 37 | - npm or yarn
 38 | - Git
 39 | 
 40 | ### Installation
 41 | 
 42 | ```bash
 43 | # Clone your fork
 44 | git clone https://github.com/yourusername/codecompass-mcp.git
 45 | cd codecompass-mcp
 46 | 
 47 | # Install dependencies
 48 | npm install
 49 | 
 50 | # Build the project
 51 | npm run build
 52 | 
 53 | # Run tests
 54 | npm test
 55 | ```
 56 | 
 57 | ### Development Workflow
 58 | 
 59 | ```bash
 60 | # Start development server
 61 | npm run dev
 62 | 
 63 | # Start development server with auto-restart
 64 | npm run dev:watch
 65 | 
 66 | # Run TypeScript type checking
 67 | npm run typecheck
 68 | 
 69 | # Run type checking in watch mode
 70 | npm run typecheck:watch
 71 | 
 72 | # Build for development (faster)
 73 | npm run build:dev
 74 | 
 75 | # Build with file watching
 76 | npm run build:watch
 77 | 
 78 | # Build for production
 79 | npm run build
 80 | 
 81 | # Run tests in watch mode
 82 | npm run test:watch
 83 | 
 84 | # Run linting
 85 | npm run lint
 86 | 
 87 | # Run linting with auto-fix
 88 | npm run lint:fix
 89 | 
 90 | # Format code
 91 | npm run format
 92 | 
 93 | # Check code formatting
 94 | npm run format:check
 95 | ```
 96 | 
 97 | ## 📁 Project Structure
 98 | 
 99 | ```
100 | codecompass-mcp/
101 | ├── src/
102 | │   ├── index.ts              # Main server entry point
103 | │   ├── services/             # Core services
104 | │   │   ├── github.ts         # GitHub API integration
105 | │   │   ├── openai.ts         # OpenRouter/AI integration
106 | │   │   └── refactor.ts       # Code transformation
107 | │   ├── tools/                # MCP tool definitions
108 | │   │   └── consolidated.ts   # All 18 tools
109 | │   ├── types/                # TypeScript type definitions
110 | │   │   ├── index.ts          # Core types
111 | │   │   └── responses.ts      # Response types
112 | │   └── utils/                # Utility functions
113 | ├── tests/                    # Test suites
114 | │   ├── integration/          # Integration tests
115 | │   └── unit/                 # Unit tests
116 | ├── docs/                     # Documentation
117 | └── examples/                 # Usage examples
118 | ```
119 | 
120 | ## 🔧 Adding New Tools
121 | 
122 | ### Tool Implementation
123 | 
124 | 1. **Add tool definition** in `src/tools/consolidated.ts`:
125 | ```typescript
126 | {
127 |   name: 'new_tool',
128 |   description: 'Description of what the tool does',
129 |   inputSchema: {
130 |     type: 'object',
131 |     properties: {
132 |       // Define input parameters
133 |     },
134 |     required: ['required_param']
135 |   }
136 | }
137 | ```
138 | 
139 | 2. **Add tool handler** in `src/index.ts`:
140 | ```typescript
141 | case 'new_tool':
142 |   return await handleNewTool(args);
143 | ```
144 | 
145 | 3. **Implement handler function**:
146 | ```typescript
147 | async function handleNewTool(args: any) {
148 |   try {
149 |     // Implementation logic
150 |     const result = await processNewTool(args);
151 |     const response = createResponse(result);
152 |     return formatToolResponse(response);
153 |   } catch (error) {
154 |     const response = createResponse(null, error);
155 |     return formatToolResponse(response);
156 |   }
157 | }
158 | ```
159 | 
160 | ### Tool Guidelines
161 | 
162 | - **Follow naming convention**: Use snake_case for tool names
163 | - **Provide clear descriptions**: Help users understand the tool's purpose
164 | - **Include comprehensive schemas**: Define all parameters and options
165 | - **Handle errors gracefully**: Use standardized error responses
166 | - **Add tests**: Include unit and integration tests
167 | - **Update documentation**: Add to API reference
168 | 
169 | ## 🧪 Testing
170 | 
171 | ### Test Structure
172 | 
173 | ```bash
174 | tests/
175 | ├── unit/                     # Unit tests
176 | │   ├── services/            # Service tests
177 | │   └── tools/               # Tool tests
178 | └── integration/             # Integration tests
179 |     ├── test-all-tools.js    # All tools test
180 |     └── test-ai-tools.js     # AI tools test
181 | ```
182 | 
183 | ### Writing Tests
184 | 
185 | ```typescript
186 | // Unit test example
187 | describe('GitHub Service', () => {
188 |   it('should fetch repository data', async () => {
189 |     const result = await githubService.getRepositoryInfo('https://github.com/test/repo');
190 |     expect(result).toBeDefined();
191 |     expect(result.name).toBe('repo');
192 |   });
193 | });
194 | 
195 | // Integration test example
196 | describe('fetch_repository_data tool', () => {
197 |   it('should return repository analysis', async () => {
198 |     const response = await callTool('fetch_repository_data', {
199 |       url: 'https://github.com/test/repo'
200 |     });
201 |     expect(response.success).toBe(true);
202 |     expect(response.data).toBeDefined();
203 |   });
204 | });
205 | ```
206 | 
207 | ### Test Commands
208 | 
209 | ```bash
210 | # Run all tests
211 | npm test
212 | 
213 | # Run unit tests only
214 | npm run test:unit
215 | 
216 | # Run integration tests only
217 | npm run test:integration
218 | 
219 | # Run tests with coverage
220 | npm run test:coverage
221 | 
222 | # Run tests in watch mode
223 | npm run test:watch
224 | ```
225 | 
226 | ## 📝 Code Style
227 | 
228 | ### TypeScript Guidelines
229 | 
230 | - Use **strict TypeScript** configuration
231 | - Define **interfaces** for all data structures
232 | - Use **type guards** for runtime validation
233 | - Avoid **`any`** type unless absolutely necessary
234 | 
235 | ### TypeScript Configuration
236 | 
237 | The project uses two TypeScript configurations:
238 | 
239 | - **`tsconfig.json`** - Production build with strict type checking
240 | - **`tsconfig.dev.json`** - Development build with optimizations
241 | 
242 | #### Key Features:
243 | - **Incremental builds** for faster compilation
244 | - **Source maps** for debugging
245 | - **Path mapping** for clean imports (`@/services/*`, `@/types/*`)
246 | - **Strict type checking** for code quality
247 | - **Node.js compatibility** with ES modules
248 | - **Declaration files** for TypeScript consumers
249 | 
250 | ### Formatting
251 | 
252 | - Use **Prettier** for code formatting
253 | - Follow **ESLint** rules for code quality
254 | - Use **2 spaces** for indentation
255 | - Max line length: **100 characters**
256 | 
257 | ### Naming Conventions
258 | 
259 | - **Variables**: `camelCase`
260 | - **Functions**: `camelCase`
261 | - **Classes**: `PascalCase`
262 | - **Constants**: `UPPER_SNAKE_CASE`
263 | - **Files**: `kebab-case.ts`
264 | - **MCP Tools**: `snake_case`
265 | 
266 | ## 📚 Documentation
267 | 
268 | ### Required Documentation
269 | 
270 | - **API Reference**: Update `docs/API.md` for new tools
271 | - **README**: Update main README for significant changes
272 | - **Code Comments**: Add JSDoc comments for public APIs
273 | - **Examples**: Provide usage examples for new features
274 | 
275 | ### Documentation Style
276 | 
277 | ```typescript
278 | /**
279 |  * Analyzes repository structure and complexity
280 |  * @param url - GitHub repository URL
281 |  * @param options - Analysis options
282 |  * @returns Promise<AnalysisResult>
283 |  * @throws {Error} When repository is not accessible
284 |  */
285 | async function analyzeRepository(url: string, options: AnalysisOptions): Promise<AnalysisResult> {
286 |   // Implementation
287 | }
288 | ```
289 | 
290 | ## 🔄 CI/CD and Automation
291 | 
292 | ### GitHub Actions
293 | 
294 | The project uses GitHub Actions for:
295 | - **Automated testing** on pull requests
296 | - **Code quality checks** (linting, formatting)
297 | - **Build verification** on multiple Node.js versions
298 | - **Security scanning** with CodeQL
299 | - **Automated releases** with semantic versioning
300 | 
301 | ### Pre-commit Hooks
302 | 
303 | ```bash
304 | # Install pre-commit hooks
305 | npm run prepare
306 | 
307 | # Hooks run automatically on commit:
308 | # - Code formatting
309 | # - Linting
310 | # - Type checking
311 | # - Test execution
312 | ```
313 | 
314 | ## 🚀 Release Process
315 | 
316 | ### Version Management
317 | 
318 | We use **semantic versioning** (semver):
319 | - **Major** (1.0.0): Breaking changes
320 | - **Minor** (1.1.0): New features, backward compatible
321 | - **Patch** (1.0.1): Bug fixes, backward compatible
322 | 
323 | ### Release Steps
324 | 
325 | 1. **Create release branch**: `git checkout -b release/v1.1.0`
326 | 2. **Update version**: `npm version minor`
327 | 3. **Update changelog**: Document changes in `CHANGELOG.md`
328 | 4. **Test thoroughly**: Run all tests and manual verification
329 | 5. **Submit PR**: Create pull request for release
330 | 6. **Merge and tag**: After approval, merge and create Git tag
331 | 7. **Publish**: Automated GitHub Actions handles npm publishing
332 | 
333 | ## 🛡️ Security
334 | 
335 | ### Security Guidelines
336 | 
337 | - **No hardcoded secrets**: Use environment variables
338 | - **Validate all inputs**: Use Zod schemas for validation
339 | - **Handle errors safely**: Don't expose sensitive information
340 | - **Keep dependencies updated**: Regular security audits
341 | 
342 | ### Reporting Security Issues
343 | 
344 | Please report security vulnerabilities to:
345 | - **Email**: [email protected]
346 | - **GitHub**: Use private security advisories
347 | - **Response time**: We aim to respond within 24 hours
348 | 
349 | ## 📊 Performance
350 | 
351 | ### Performance Guidelines
352 | 
353 | - **Cache API responses** when possible
354 | - **Implement rate limiting** for external APIs
355 | - **Use streaming** for large data processing
356 | - **Monitor memory usage** in long-running operations
357 | - **Optimize database queries** if adding persistence
358 | 
359 | ### Benchmarking
360 | 
361 | ```bash
362 | # Run performance tests
363 | npm run benchmark
364 | 
365 | # Profile memory usage
366 | npm run profile
367 | ```
368 | 
369 | ## 🤖 AI Integration
370 | 
371 | ### OpenRouter Integration
372 | 
373 | - **Model selection**: Use intelligent auto-selection
374 | - **Error handling**: Graceful fallbacks for API failures
375 | - **Cost optimization**: Prefer cost-effective models for batch operations
376 | - **Transparency**: Always log model usage and costs
377 | 
378 | ### Adding New AI Features
379 | 
380 | 1. **Update model characteristics** in `src/services/openai.ts`
381 | 2. **Add model selection logic** for new use cases
382 | 3. **Implement proper error handling** for AI failures
383 | 4. **Add cost warnings** for expensive operations
384 | 5. **Include model transparency** in responses
385 | 
386 | ## 📞 Getting Help
387 | 
388 | ### Community Resources
389 | 
390 | - **GitHub Issues**: Bug reports and feature requests
391 | - **GitHub Discussions**: General questions and ideas
392 | - **Documentation**: Comprehensive guides and API reference
393 | - **Examples**: Working code examples and patterns
394 | 
395 | ### Maintainer Contact
396 | 
397 | - **GitHub**: @alchemist6
398 | - **Email**: [email protected]
399 | - **Response time**: Usually within 24-48 hours
400 | 
401 | ## 📜 Code of Conduct
402 | 
403 | ### Our Standards
404 | 
405 | - **Be respectful**: Treat all contributors with respect
406 | - **Be inclusive**: Welcome people of all backgrounds
407 | - **Be constructive**: Provide helpful feedback
408 | - **Be collaborative**: Work together toward common goals
409 | 
410 | ### Enforcement
411 | 
412 | Violations of the code of conduct should be reported to the maintainers. All complaints will be reviewed and investigated promptly and fairly.
413 | 
414 | ---
415 | 
416 | **Thank you for contributing to CodeCompass MCP!** 🙏
417 | 
418 | Your contributions help make code analysis and AI-powered development tools accessible to everyone. Together, we're building something amazing! 🚀
```

--------------------------------------------------------------------------------
/scripts/start-mcp.sh:
--------------------------------------------------------------------------------

```bash
 1 | #!/bin/bash
 2 | 
 3 | # CodeCompass MCP Server Startup Script
 4 | # This script starts the CodeCompass MCP server with proper configuration
 5 | 
 6 | echo "🚀 Starting CodeCompass MCP Server..."
 7 | 
 8 | # Set environment variables
 9 | export NODE_ENV=production
10 | 
11 | # Optional: Set GitHub token if available (improves rate limits)
12 | # export GITHUB_TOKEN=your_github_token_here
13 | 
14 | # Change to the server directory
15 | cd "$(dirname "$0")"
16 | 
17 | # Start the server
18 | node build/index.js
19 | 
20 | echo "🛑 CodeCompass MCP Server stopped."
```

--------------------------------------------------------------------------------
/config/tsconfig.dev.json:
--------------------------------------------------------------------------------

```json
 1 | {
 2 |   "extends": "./tsconfig.json",
 3 |   "compilerOptions": {
 4 |     // Development-specific overrides
 5 |     "sourceMap": true,
 6 |     "inlineSourceMap": false,
 7 |     "inlineSources": false,
 8 |     "removeComments": false,
 9 |     
10 |     // Development build optimizations
11 |     "incremental": true,
12 |     "skipLibCheck": true,
13 |     
14 |     // Enhanced error reporting
15 |     "pretty": true,
16 |     "noErrorTruncation": true,
17 |     
18 |     // Watch mode configuration
19 |     "preserveWatchOutput": true
20 |   },
21 |   "include": [
22 |     "src/**/*",
23 |     "src/**/*.json"
24 |   ],
25 |   "exclude": [
26 |     "node_modules",
27 |     "build",
28 |     "tests/**/*.test.ts",
29 |     "tests/**/*.spec.ts",
30 |     "**/*.d.ts"
31 |   ]
32 | }
```

--------------------------------------------------------------------------------
/docker/docker-compose.dev.yml:
--------------------------------------------------------------------------------

```yaml
 1 | version: '3.8'
 2 | 
 3 | services:
 4 |   codecompass-mcp:
 5 |     build:
 6 |       context: .
 7 |       dockerfile: Dockerfile.dev
 8 |       args:
 9 |         NODE_ENV: development
10 |     environment:
11 |       - NODE_ENV=development
12 |       - LOG_LEVEL=debug
13 |     volumes:
14 |       # Mount source code for development
15 |       - .:/app
16 |       - /app/node_modules
17 |       # Mount for development logs
18 |       - ./logs:/app/logs
19 |     ports:
20 |       - "3000:3000"
21 |       - "9229:9229"  # Debug port
22 |     command: ["npm", "run", "dev"]
23 |     # Override health check for development
24 |     healthcheck:
25 |       test: ["CMD", "curl", "-f", "http://localhost:3000/health"]
26 |       interval: 30s
27 |       timeout: 10s
28 |       retries: 3
29 |       start_period: 40s
```

--------------------------------------------------------------------------------
/Dockerfile:
--------------------------------------------------------------------------------

```dockerfile
 1 | # Use official Node.js runtime as base image
 2 | FROM node:18-alpine
 3 | 
 4 | # Set working directory
 5 | WORKDIR /app
 6 | 
 7 | # Create non-root user for security
 8 | RUN addgroup -g 1001 -S nodejs && \
 9 |     adduser -S codecompass -u 1001
10 | 
11 | # Copy package files
12 | COPY package*.json ./
13 | 
14 | # Install all dependencies (including dev dependencies for build)
15 | RUN npm ci && \
16 |     npm cache clean --force
17 | 
18 | # Copy source code
19 | COPY . .
20 | 
21 | # Build the application
22 | RUN npm run build
23 | 
24 | # Remove dev dependencies after build
25 | RUN npm prune --production
26 | 
27 | # Set ownership of app directory
28 | RUN chown -R codecompass:nodejs /app
29 | 
30 | # Switch to non-root user
31 | USER codecompass
32 | 
33 | # Expose port for health checks (optional)
34 | EXPOSE 3000
35 | 
36 | # Add health check
37 | HEALTHCHECK --interval=30s --timeout=3s --start-period=5s --retries=3 \
38 |   CMD node -e "console.log('Health check passed')" || exit 1
39 | 
40 | # Set environment variables
41 | ENV NODE_ENV=production
42 | ENV LOG_LEVEL=info
43 | 
44 | # Start the application
45 | CMD ["node", "build/index.js"]
```

--------------------------------------------------------------------------------
/tsconfig.json:
--------------------------------------------------------------------------------

```json
 1 | {
 2 |   "compilerOptions": {
 3 |     // Target and Module Configuration
 4 |     "target": "ES2022",
 5 |     "module": "ESNext",
 6 |     "lib": ["ES2022"],
 7 |     "moduleResolution": "node",
 8 |     
 9 |     // Build Configuration
10 |     "outDir": "./build",
11 |     "rootDir": "./src",
12 |     "incremental": true,
13 |     "tsBuildInfoFile": "./build/.tsbuildinfo",
14 |     
15 |     // Type Checking
16 |     "strict": true,
17 |     "noImplicitAny": true,
18 |     "strictNullChecks": true,
19 |     "strictFunctionTypes": true,
20 |     "noImplicitReturns": true,
21 |     "noFallthroughCasesInSwitch": true,
22 |     "noUncheckedIndexedAccess": false,
23 |     "exactOptionalPropertyTypes": false,
24 |     
25 |     // Module Resolution
26 |     "esModuleInterop": true,
27 |     "allowSyntheticDefaultImports": true,
28 |     "resolveJsonModule": true,
29 |     "moduleDetection": "force",
30 |     
31 |     // Emit Configuration
32 |     "declaration": true,
33 |     "declarationMap": true,
34 |     "sourceMap": true,
35 |     "removeComments": false,
36 |     "importHelpers": true,
37 |     
38 |     // Advanced Options
39 |     "skipLibCheck": true,
40 |     "forceConsistentCasingInFileNames": true,
41 |     "allowUnusedLabels": false,
42 |     "allowUnreachableCode": false,
43 |     "noImplicitOverride": true,
44 |     
45 |     // Path Mapping
46 |     "baseUrl": ".",
47 |     "paths": {
48 |       "@/*": ["src/*"],
49 |       "@/types/*": ["src/types/*"],
50 |       "@/services/*": ["src/services/*"],
51 |       "@/tools/*": ["src/tools/*"],
52 |       "@/utils/*": ["src/utils/*"]
53 |     },
54 |     
55 |     // Node.js Compatibility
56 |     "types": ["node"],
57 |     "allowImportingTsExtensions": false
58 |   },
59 |   "include": [
60 |     "src/**/*",
61 |     "src/**/*.json"
62 |   ],
63 |   "exclude": [
64 |     "node_modules",
65 |     "build",
66 |     "tests",
67 |     "**/*.test.ts",
68 |     "**/*.spec.ts"
69 |   ],
70 |   "ts-node": {
71 |     "esm": true,
72 |     "experimentalSpecifierResolution": "node"
73 |   }
74 | }
```

--------------------------------------------------------------------------------
/docker/docker-compose.yml:
--------------------------------------------------------------------------------

```yaml
 1 | version: '3.8'
 2 | 
 3 | services:
 4 |   codecompass-mcp:
 5 |     build:
 6 |       context: .
 7 |       dockerfile: Dockerfile
 8 |     container_name: codecompass-mcp
 9 |     environment:
10 |       - NODE_ENV=production
11 |       - LOG_LEVEL=info
12 |       - GITHUB_TOKEN=${GITHUB_TOKEN}
13 |       - OPENROUTER_API_KEY=${OPENROUTER_API_KEY}
14 |       - OPENAI_MODEL=${OPENAI_MODEL:-anthropic/claude-3.5-sonnet}
15 |       - MAX_RESPONSE_TOKENS=${MAX_RESPONSE_TOKENS:-25000}
16 |       - MAX_FILE_CONTENT_LENGTH=${MAX_FILE_CONTENT_LENGTH:-1000}
17 |       - CACHE_ENABLED=${CACHE_ENABLED:-true}
18 |       - CACHE_TTL=${CACHE_TTL:-300000}
19 |       - MAX_FILES=${MAX_FILES:-100}
20 |       - MAX_FILE_SIZE=${MAX_FILE_SIZE:-1048576}
21 |       - MAX_PROCESSING_TIME=${MAX_PROCESSING_TIME:-60000}
22 |     volumes:
23 |       # Mount for persistent logs (optional)
24 |       - codecompass-logs:/app/logs
25 |       # Mount for configuration (optional)
26 |       - ./config:/app/config:ro
27 |     restart: unless-stopped
28 |     stdin_open: true
29 |     tty: true
30 |     # Health check
31 |     healthcheck:
32 |       test: ["CMD", "node", "-e", "console.log('Health check passed')"]
33 |       interval: 30s
34 |       timeout: 10s
35 |       retries: 3
36 |       start_period: 40s
37 |     # Resource limits
38 |     deploy:
39 |       resources:
40 |         limits:
41 |           cpus: '1.0'
42 |           memory: 512M
43 |         reservations:
44 |           cpus: '0.5'
45 |           memory: 256M
46 | 
47 |   # Optional: Add a logging service
48 |   codecompass-logs:
49 |     image: fluent/fluent-bit:latest
50 |     container_name: codecompass-logs
51 |     depends_on:
52 |       - codecompass-mcp
53 |     volumes:
54 |       - codecompass-logs:/var/log/codecompass
55 |       - ./docker/fluent-bit.conf:/fluent-bit/etc/fluent-bit.conf:ro
56 |     restart: unless-stopped
57 |     profiles:
58 |       - logging
59 | 
60 | volumes:
61 |   codecompass-logs:
62 |     driver: local
63 | 
64 | # Example usage:
65 | # 1. Basic deployment:
66 | #    docker-compose up -d
67 | #
68 | # 2. With logging:
69 | #    docker-compose --profile logging up -d
70 | #
71 | # 3. Development mode:
72 | #    docker-compose -f docker-compose.yml -f docker-compose.dev.yml up
```

--------------------------------------------------------------------------------
/package.json:
--------------------------------------------------------------------------------

```json
 1 | {
 2 |   "name": "codecompass-mcp",
 3 |   "version": "1.0.0",
 4 |   "description": "Advanced MCP server for GitHub repository analysis, code refactoring, and AI-powered code insights with OpenRouter integration",
 5 |   "main": "build/index.js",
 6 |   "type": "module",
 7 |   "scripts": {
 8 |     "build": "tsc",
 9 |     "build:dev": "tsc --project config/tsconfig.dev.json",
10 |     "build:watch": "tsc --watch --project config/tsconfig.dev.json",
11 |     "start": "node build/index.js",
12 |     "dev": "tsx src/index.ts",
13 |     "dev:watch": "tsx watch src/index.ts",
14 |     "test": "npm run test:unit",
15 |     "test:unit": "echo 'Unit tests not implemented yet'",
16 |     "test:verify": "bash tests/verify-installation.sh",
17 |     "clean": "rm -rf build/ && rm -f *.tsbuildinfo",
18 |     "prebuild": "npm run clean",
19 |     "typecheck": "tsc --noEmit",
20 |     "typecheck:watch": "tsc --noEmit --watch",
21 |     "lint": "eslint src/**/*.ts --config config/.eslintrc.json",
22 |     "lint:fix": "eslint src/**/*.ts --config config/.eslintrc.json --fix",
23 |     "format": "prettier --write src/**/*.ts --config config/.prettierrc",
24 |     "format:check": "prettier --check src/**/*.ts --config config/.prettierrc"
25 |   },
26 |   "keywords": [
27 |     "mcp",
28 |     "github",
29 |     "refactoring", 
30 |     "code-analysis",
31 |     "openrouter",
32 |     "ai-tools",
33 |     "code-review",
34 |     "repository-analysis",
35 |     "model-context-protocol",
36 |     "claude-desktop"
37 |   ],
38 |   "author": "Myron Labs Team",
39 |   "license": "MIT",
40 |   "repository": {
41 |     "type": "git",
42 |     "url": "https://github.com/codecompass/codecompass-mcp.git"
43 |   },
44 |   "bugs": {
45 |     "url": "https://github.com/codecompass/codecompass-mcp/issues"
46 |   },
47 |   "homepage": "https://github.com/codecompass/codecompass-mcp#readme",
48 |   "dependencies": {
49 |     "@modelcontextprotocol/sdk": "^0.6.0",
50 |     "@octokit/rest": "^22.0.0",
51 |     "zod": "^3.24.2",
52 |     "typescript": "^5.6.3",
53 |     "@types/node": "^20.16.11",
54 |     "nanoid": "^5.1.5",
55 |     "openai": "^4.67.1"
56 |   },
57 |   "devDependencies": {
58 |     "tsx": "^4.19.1",
59 |     "jest": "^29.7.0",
60 |     "@types/jest": "^29.5.13",
61 |     "eslint": "^8.57.0",
62 |     "@typescript-eslint/eslint-plugin": "^6.21.0",
63 |     "@typescript-eslint/parser": "^6.21.0",
64 |     "prettier": "^3.3.3"
65 |   },
66 |   "engines": {
67 |     "node": ">=18.0.0"
68 |   }
69 | }
```

--------------------------------------------------------------------------------
/tests/verify-installation.sh:
--------------------------------------------------------------------------------

```bash
 1 | #!/bin/bash
 2 | 
 3 | echo "🔍 CodeCompass MCP Server Installation Verification"
 4 | echo "=================================================="
 5 | 
 6 | # Check Node.js version
 7 | echo "1. Checking Node.js version..."
 8 | node_version=$(node --version)
 9 | echo "   Node.js version: $node_version"
10 | 
11 | if [[ "$node_version" < "v18" ]]; then
12 |     echo "   ❌ Node.js 18+ is required. Please upgrade."
13 |     exit 1
14 | else
15 |     echo "   ✅ Node.js version is compatible"
16 | fi
17 | 
18 | # Check if server is built
19 | echo
20 | echo "2. Checking if server is built..."
21 | if [ -f "build/index.js" ]; then
22 |     echo "   ✅ Server is built"
23 | else
24 |     echo "   ❌ Server not built. Running npm run build..."
25 |     npm run build
26 |     if [ $? -eq 0 ]; then
27 |         echo "   ✅ Build completed successfully"
28 |     else
29 |         echo "   ❌ Build failed"
30 |         exit 1
31 |     fi
32 | fi
33 | 
34 | # Check Claude Code configuration
35 | echo
36 | echo "3. Checking Claude Code configuration..."
37 | if [ -f "$HOME/.claude-code/mcp_servers.json" ]; then
38 |     echo "   ✅ Claude Code MCP configuration exists"
39 |     echo "   Configuration file: $HOME/.claude-code/mcp_servers.json"
40 | else
41 |     echo "   ❌ Claude Code MCP configuration not found"
42 |     echo "   Please make sure Claude Code is installed and configured"
43 | fi
44 | 
45 | # Test server startup
46 | echo
47 | echo "4. Testing server startup..."
48 | timeout 5s node build/index.js > /dev/null 2>&1
49 | exit_code=$?
50 | if [ $exit_code -eq 124 ]; then
51 |     echo "   ✅ Server starts successfully (timeout as expected)"
52 | elif [ $exit_code -eq 0 ]; then
53 |     echo "   ✅ Server starts successfully"
54 | else
55 |     echo "   ❌ Server failed to start (exit code: $exit_code)"
56 |     exit 1
57 | fi
58 | 
59 | # Check GitHub token (optional)
60 | echo
61 | echo "5. Checking GitHub token (optional)..."
62 | if [ -n "$GITHUB_TOKEN" ]; then
63 |     echo "   ✅ GitHub token is set (higher rate limits)"
64 | else
65 |     echo "   ⚠️  GitHub token not set (using public API limits)"
66 |     echo "   To set a token: export GITHUB_TOKEN=your_token_here"
67 | fi
68 | 
69 | echo
70 | echo "🎉 Installation verification complete!"
71 | echo
72 | echo "📋 Summary:"
73 | echo "   - Node.js: ✅ Compatible"
74 | echo "   - Server built: ✅ Ready"
75 | echo "   - Configuration: ✅ Configured"
76 | echo "   - Server startup: ✅ Working"
77 | echo "   - GitHub token: $([ -n "$GITHUB_TOKEN" ] && echo "✅ Set" || echo "⚠️ Not set")"
78 | echo
79 | echo "🚀 You can now use the CodeCompass MCP server with Claude Code!"
80 | echo
81 | echo "Usage examples:"
82 | echo "   - 'Analyze this repository: https://github.com/user/repo'"
83 | echo "   - 'Extract reusable components from this React project'"
84 | echo "   - 'Transform this code to use modern JavaScript features'"
85 | echo
86 | echo "For more information, see the README.md file."
```

--------------------------------------------------------------------------------
/scripts/docker-logs.sh:
--------------------------------------------------------------------------------

```bash
  1 | #!/bin/bash
  2 | 
  3 | # CodeCompass MCP Docker Logs Script
  4 | # Utility script for viewing container logs
  5 | 
  6 | set -e
  7 | 
  8 | # Colors for output
  9 | RED='\033[0;31m'
 10 | GREEN='\033[0;32m'
 11 | YELLOW='\033[1;33m'
 12 | BLUE='\033[0;34m'
 13 | NC='\033[0m' # No Color
 14 | 
 15 | # Default values
 16 | CONTAINER_NAME="codecompass-mcp"
 17 | FOLLOW=false
 18 | TAIL_LINES=100
 19 | SHOW_TIMESTAMPS=false
 20 | 
 21 | # Function to display usage
 22 | show_usage() {
 23 |     echo "Usage: $0 [OPTIONS]"
 24 |     echo "Options:"
 25 |     echo "  -n, --name NAME        Container name (default: codecompass-mcp)"
 26 |     echo "  -f, --follow           Follow log output"
 27 |     echo "  -t, --tail LINES       Number of lines to show (default: 100)"
 28 |     echo "  --timestamps           Show timestamps"
 29 |     echo "  --all                  Show all logs (no tail limit)"
 30 |     echo "  -h, --help             Show this help message"
 31 |     echo ""
 32 |     echo "Examples:"
 33 |     echo "  $0                     # Show last 100 lines"
 34 |     echo "  $0 -f                  # Follow logs"
 35 |     echo "  $0 -t 50               # Show last 50 lines"
 36 |     echo "  $0 --all               # Show all logs"
 37 |     echo "  $0 --timestamps -f     # Follow with timestamps"
 38 | }
 39 | 
 40 | # Parse command line arguments
 41 | while [[ $# -gt 0 ]]; do
 42 |     case $1 in
 43 |         -n|--name)
 44 |             CONTAINER_NAME="$2"
 45 |             shift 2
 46 |             ;;
 47 |         -f|--follow)
 48 |             FOLLOW=true
 49 |             shift
 50 |             ;;
 51 |         -t|--tail)
 52 |             TAIL_LINES="$2"
 53 |             shift 2
 54 |             ;;
 55 |         --timestamps)
 56 |             SHOW_TIMESTAMPS=true
 57 |             shift
 58 |             ;;
 59 |         --all)
 60 |             TAIL_LINES="all"
 61 |             shift
 62 |             ;;
 63 |         -h|--help)
 64 |             show_usage
 65 |             exit 0
 66 |             ;;
 67 |         *)
 68 |             echo "Unknown option: $1"
 69 |             show_usage
 70 |             exit 1
 71 |             ;;
 72 |     esac
 73 | done
 74 | 
 75 | echo -e "${BLUE}CodeCompass MCP Docker Logs${NC}"
 76 | echo -e "${BLUE}===========================${NC}"
 77 | echo "Container: $CONTAINER_NAME"
 78 | echo ""
 79 | 
 80 | # Check if container exists
 81 | if ! docker ps -a --format "table {{.Names}}" | grep -q "^$CONTAINER_NAME$"; then
 82 |     echo -e "${RED}Error: Container '$CONTAINER_NAME' not found${NC}"
 83 |     echo "Available containers:"
 84 |     docker ps -a --format "table {{.Names}}\t{{.Status}}\t{{.Image}}"
 85 |     exit 1
 86 | fi
 87 | 
 88 | # Check if container is running
 89 | if ! docker ps --format "table {{.Names}}" | grep -q "^$CONTAINER_NAME$"; then
 90 |     echo -e "${YELLOW}Warning: Container '$CONTAINER_NAME' is not running${NC}"
 91 |     echo "Showing logs from stopped container..."
 92 |     echo ""
 93 | fi
 94 | 
 95 | # Build docker logs command
 96 | DOCKER_CMD="docker logs"
 97 | 
 98 | if [ "$SHOW_TIMESTAMPS" = true ]; then
 99 |     DOCKER_CMD="$DOCKER_CMD --timestamps"
100 | fi
101 | 
102 | if [ "$FOLLOW" = true ]; then
103 |     DOCKER_CMD="$DOCKER_CMD --follow"
104 | fi
105 | 
106 | if [ "$TAIL_LINES" != "all" ]; then
107 |     DOCKER_CMD="$DOCKER_CMD --tail $TAIL_LINES"
108 | fi
109 | 
110 | DOCKER_CMD="$DOCKER_CMD $CONTAINER_NAME"
111 | 
112 | echo -e "${YELLOW}Showing logs for container '$CONTAINER_NAME'${NC}"
113 | if [ "$FOLLOW" = true ]; then
114 |     echo -e "${YELLOW}Following logs... (Press Ctrl+C to stop)${NC}"
115 | fi
116 | echo ""
117 | 
118 | # Execute the command
119 | eval $DOCKER_CMD
```

--------------------------------------------------------------------------------
/scripts/docker-build.sh:
--------------------------------------------------------------------------------

```bash
  1 | #!/bin/bash
  2 | 
  3 | # CodeCompass MCP Docker Build Script
  4 | # Based on patterns from OpenRouter MCP repository
  5 | 
  6 | set -e
  7 | 
  8 | # Colors for output
  9 | RED='\033[0;31m'
 10 | GREEN='\033[0;32m'
 11 | YELLOW='\033[1;33m'
 12 | BLUE='\033[0;34m'
 13 | NC='\033[0m' # No Color
 14 | 
 15 | # Default values
 16 | IMAGE_NAME="codecompass-mcp"
 17 | TAG="latest"
 18 | DOCKERFILE="Dockerfile"
 19 | PUSH_TO_REGISTRY=false
 20 | REGISTRY=""
 21 | BUILD_ARGS=""
 22 | 
 23 | # Function to display usage
 24 | show_usage() {
 25 |     echo "Usage: $0 [OPTIONS]"
 26 |     echo "Options:"
 27 |     echo "  -t, --tag TAG          Set image tag (default: latest)"
 28 |     echo "  -f, --file FILE        Dockerfile to use (default: Dockerfile)"
 29 |     echo "  -p, --push             Push to registry after build"
 30 |     echo "  -r, --registry REG     Registry to push to"
 31 |     echo "  --build-arg KEY=VALUE  Build argument"
 32 |     echo "  --dev                  Use development Dockerfile"
 33 |     echo "  -h, --help             Show this help message"
 34 |     echo ""
 35 |     echo "Examples:"
 36 |     echo "  $0                     # Build with default settings"
 37 |     echo "  $0 --dev               # Build development image"
 38 |     echo "  $0 -t v1.0.0 --push    # Build and push v1.0.0"
 39 |     echo "  $0 --build-arg NODE_ENV=production"
 40 | }
 41 | 
 42 | # Parse command line arguments
 43 | while [[ $# -gt 0 ]]; do
 44 |     case $1 in
 45 |         -t|--tag)
 46 |             TAG="$2"
 47 |             shift 2
 48 |             ;;
 49 |         -f|--file)
 50 |             DOCKERFILE="$2"
 51 |             shift 2
 52 |             ;;
 53 |         -p|--push)
 54 |             PUSH_TO_REGISTRY=true
 55 |             shift
 56 |             ;;
 57 |         -r|--registry)
 58 |             REGISTRY="$2"
 59 |             shift 2
 60 |             ;;
 61 |         --build-arg)
 62 |             BUILD_ARGS="$BUILD_ARGS --build-arg $2"
 63 |             shift 2
 64 |             ;;
 65 |         --dev)
 66 |             DOCKERFILE="Dockerfile.dev"
 67 |             TAG="dev"
 68 |             shift
 69 |             ;;
 70 |         -h|--help)
 71 |             show_usage
 72 |             exit 0
 73 |             ;;
 74 |         *)
 75 |             echo "Unknown option: $1"
 76 |             show_usage
 77 |             exit 1
 78 |             ;;
 79 |     esac
 80 | done
 81 | 
 82 | # Construct full image name
 83 | FULL_IMAGE_NAME="${IMAGE_NAME}:${TAG}"
 84 | if [ -n "$REGISTRY" ]; then
 85 |     FULL_IMAGE_NAME="${REGISTRY}/${FULL_IMAGE_NAME}"
 86 | fi
 87 | 
 88 | echo -e "${BLUE}CodeCompass MCP Docker Build${NC}"
 89 | echo -e "${BLUE}=============================${NC}"
 90 | echo "Image: $FULL_IMAGE_NAME"
 91 | echo "Dockerfile: $DOCKERFILE"
 92 | echo "Build args: $BUILD_ARGS"
 93 | echo ""
 94 | 
 95 | # Check if Dockerfile exists
 96 | if [ ! -f "$DOCKERFILE" ]; then
 97 |     echo -e "${RED}Error: Dockerfile '$DOCKERFILE' not found${NC}"
 98 |     exit 1
 99 | fi
100 | 
101 | # Build the image
102 | echo -e "${YELLOW}Building Docker image...${NC}"
103 | docker build \
104 |     -t "$FULL_IMAGE_NAME" \
105 |     -f "$DOCKERFILE" \
106 |     $BUILD_ARGS \
107 |     .
108 | 
109 | if [ $? -eq 0 ]; then
110 |     echo -e "${GREEN}✓ Build successful${NC}"
111 |     
112 |     # Show image info
113 |     echo -e "${BLUE}Image information:${NC}"
114 |     docker images "$FULL_IMAGE_NAME"
115 |     
116 |     # Push to registry if requested
117 |     if [ "$PUSH_TO_REGISTRY" = true ]; then
118 |         echo -e "${YELLOW}Pushing to registry...${NC}"
119 |         docker push "$FULL_IMAGE_NAME"
120 |         
121 |         if [ $? -eq 0 ]; then
122 |             echo -e "${GREEN}✓ Push successful${NC}"
123 |         else
124 |             echo -e "${RED}✗ Push failed${NC}"
125 |             exit 1
126 |         fi
127 |     fi
128 |     
129 |     echo -e "${GREEN}✓ Docker build completed successfully${NC}"
130 |     echo ""
131 |     echo "To run the container:"
132 |     echo "  docker run -d --name codecompass-mcp $FULL_IMAGE_NAME"
133 |     echo ""
134 |     echo "To run with environment variables:"
135 |     echo "  docker run -d --name codecompass-mcp \\"
136 |     echo "    -e GITHUB_TOKEN=your_token \\"
137 |     echo "    -e OPENROUTER_API_KEY=your_key \\"
138 |     echo "    $FULL_IMAGE_NAME"
139 |     
140 | else
141 |     echo -e "${RED}✗ Build failed${NC}"
142 |     exit 1
143 | fi
```

--------------------------------------------------------------------------------
/docs/legacy-tools/repository.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { Tool } from '@modelcontextprotocol/sdk/types.js';
  2 | 
  3 | export const repositoryTools: Tool[] = [
  4 |   {
  5 |     name: 'analyze_repository',
  6 |     description: 'Perform comprehensive analysis of a GitHub repository including structure, dependencies, and refactoring potential',
  7 |     inputSchema: {
  8 |       type: 'object',
  9 |       properties: {
 10 |         url: {
 11 |           type: 'string',
 12 |           description: 'GitHub repository URL (e.g., https://github.com/owner/repo)',
 13 |         },
 14 |         options: {
 15 |           type: 'object',
 16 |           properties: {
 17 |             includeTests: {
 18 |               type: 'boolean',
 19 |               description: 'Include test files in analysis',
 20 |               default: true,
 21 |             },
 22 |             includeDocs: {
 23 |               type: 'boolean',
 24 |               description: 'Include documentation files in analysis',
 25 |               default: true,
 26 |             },
 27 |             maxFiles: {
 28 |               type: 'number',
 29 |               description: 'Maximum number of files to analyze',
 30 |               default: 100,
 31 |             },
 32 |             languages: {
 33 |               type: 'array',
 34 |               items: { type: 'string' },
 35 |               description: 'Specific languages to focus on (e.g., ["javascript", "typescript"])',
 36 |             },
 37 |           },
 38 |         },
 39 |       },
 40 |       required: ['url'],
 41 |     },
 42 |   },
 43 |   {
 44 |     name: 'get_repository_info',
 45 |     description: 'Get basic repository information including metadata, file structure, and key files',
 46 |     inputSchema: {
 47 |       type: 'object',
 48 |       properties: {
 49 |         url: {
 50 |           type: 'string',
 51 |           description: 'GitHub repository URL',
 52 |         },
 53 |         branch: {
 54 |           type: 'string',
 55 |           description: 'Specific branch to analyze (default: main/master)',
 56 |         },
 57 |       },
 58 |       required: ['url'],
 59 |     },
 60 |   },
 61 |   {
 62 |     name: 'get_file_tree',
 63 |     description: 'Get complete file tree structure of a repository with optional filtering',
 64 |     inputSchema: {
 65 |       type: 'object',
 66 |       properties: {
 67 |         url: {
 68 |           type: 'string',
 69 |           description: 'GitHub repository URL',
 70 |         },
 71 |         path: {
 72 |           type: 'string',
 73 |           description: 'Specific path to start from (default: root)',
 74 |         },
 75 |         maxDepth: {
 76 |           type: 'number',
 77 |           description: 'Maximum depth to traverse (default: unlimited)',
 78 |         },
 79 |         includeHidden: {
 80 |           type: 'boolean',
 81 |           description: 'Include hidden files and directories',
 82 |           default: false,
 83 |         },
 84 |         extensions: {
 85 |           type: 'array',
 86 |           items: { type: 'string' },
 87 |           description: 'Filter by file extensions (e.g., [".js", ".ts"])',
 88 |         },
 89 |       },
 90 |       required: ['url'],
 91 |     },
 92 |   },
 93 |   {
 94 |     name: 'analyze_dependencies',
 95 |     description: 'Analyze project dependencies and their relationships',
 96 |     inputSchema: {
 97 |       type: 'object',
 98 |       properties: {
 99 |         url: {
100 |           type: 'string',
101 |           description: 'GitHub repository URL',
102 |         },
103 |         includeDevDependencies: {
104 |           type: 'boolean',
105 |           description: 'Include development dependencies',
106 |           default: true,
107 |         },
108 |         analyzeSecurity: {
109 |           type: 'boolean',
110 |           description: 'Check for security vulnerabilities',
111 |           default: false,
112 |         },
113 |         suggestAlternatives: {
114 |           type: 'boolean',
115 |           description: 'Suggest alternative libraries',
116 |           default: false,
117 |         },
118 |       },
119 |       required: ['url'],
120 |     },
121 |   },
122 |   {
123 |     name: 'get_architecture_overview',
124 |     description: 'Get high-level architecture overview of the repository',
125 |     inputSchema: {
126 |       type: 'object',
127 |       properties: {
128 |         url: {
129 |           type: 'string',
130 |           description: 'GitHub repository URL',
131 |         },
132 |         focusAreas: {
133 |           type: 'array',
134 |           items: { type: 'string' },
135 |           description: 'Specific areas to focus on (e.g., ["frontend", "backend", "database"])',
136 |         },
137 |       },
138 |       required: ['url'],
139 |     },
140 |   },
141 |   {
142 |     name: 'identify_patterns',
143 |     description: 'Identify architectural patterns and design principles used in the repository',
144 |     inputSchema: {
145 |       type: 'object',
146 |       properties: {
147 |         url: {
148 |           type: 'string',
149 |           description: 'GitHub repository URL',
150 |         },
151 |         patternTypes: {
152 |           type: 'array',
153 |           items: { type: 'string' },
154 |           description: 'Types of patterns to look for (e.g., ["mvc", "observer", "factory"])',
155 |         },
156 |       },
157 |       required: ['url'],
158 |     },
159 |   },
160 | ];
```

--------------------------------------------------------------------------------
/docs/legacy-tools/files.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { Tool } from '@modelcontextprotocol/sdk/types.js';
  2 | 
  3 | export const fileTools: Tool[] = [
  4 |   {
  5 |     name: 'get_file_content',
  6 |     description: 'Retrieve the content of a specific file from a GitHub repository',
  7 |     inputSchema: {
  8 |       type: 'object',
  9 |       properties: {
 10 |         url: {
 11 |           type: 'string',
 12 |           description: 'GitHub repository URL',
 13 |         },
 14 |         filePath: {
 15 |           type: 'string',
 16 |           description: 'Path to the file within the repository',
 17 |         },
 18 |         branch: {
 19 |           type: 'string',
 20 |           description: 'Branch to read from (default: main/master)',
 21 |         },
 22 |         includeMetadata: {
 23 |           type: 'boolean',
 24 |           description: 'Include file metadata (size, last modified, etc.)',
 25 |           default: false,
 26 |         },
 27 |       },
 28 |       required: ['url', 'filePath'],
 29 |     },
 30 |   },
 31 |   {
 32 |     name: 'get_key_files',
 33 |     description: 'Extract and analyze key files from a repository (README, config files, main entry points)',
 34 |     inputSchema: {
 35 |       type: 'object',
 36 |       properties: {
 37 |         url: {
 38 |           type: 'string',
 39 |           description: 'GitHub repository URL',
 40 |         },
 41 |         fileTypes: {
 42 |           type: 'array',
 43 |           items: { type: 'string' },
 44 |           description: 'Types of key files to extract (e.g., ["config", "entry", "documentation"])',
 45 |         },
 46 |         maxSize: {
 47 |           type: 'number',
 48 |           description: 'Maximum file size to include (in bytes)',
 49 |           default: 50000,
 50 |         },
 51 |       },
 52 |       required: ['url'],
 53 |     },
 54 |   },
 55 |   {
 56 |     name: 'extract_functions',
 57 |     description: 'Extract specific functions or classes from files',
 58 |     inputSchema: {
 59 |       type: 'object',
 60 |       properties: {
 61 |         url: {
 62 |           type: 'string',
 63 |           description: 'GitHub repository URL',
 64 |         },
 65 |         filePath: {
 66 |           type: 'string',
 67 |           description: 'Path to the file containing the functions',
 68 |         },
 69 |         functionNames: {
 70 |           type: 'array',
 71 |           items: { type: 'string' },
 72 |           description: 'Names of functions to extract (optional - extracts all if not specified)',
 73 |         },
 74 |         includeDocumentation: {
 75 |           type: 'boolean',
 76 |           description: 'Include function documentation/comments',
 77 |           default: true,
 78 |         },
 79 |         includeDependencies: {
 80 |           type: 'boolean',
 81 |           description: 'Include function dependencies and imports',
 82 |           default: true,
 83 |         },
 84 |       },
 85 |       required: ['url', 'filePath'],
 86 |     },
 87 |   },
 88 |   {
 89 |     name: 'search_code',
 90 |     description: 'Search for specific code patterns, functions, or text within the repository',
 91 |     inputSchema: {
 92 |       type: 'object',
 93 |       properties: {
 94 |         url: {
 95 |           type: 'string',
 96 |           description: 'GitHub repository URL',
 97 |         },
 98 |         query: {
 99 |           type: 'string',
100 |           description: 'Search query (can be regex or plain text)',
101 |         },
102 |         searchType: {
103 |           type: 'string',
104 |           enum: ['text', 'regex', 'function', 'class', 'variable'],
105 |           description: 'Type of search to perform',
106 |           default: 'text',
107 |         },
108 |         fileExtensions: {
109 |           type: 'array',
110 |           items: { type: 'string' },
111 |           description: 'File extensions to search in (e.g., [".js", ".ts"])',
112 |         },
113 |         excludePaths: {
114 |           type: 'array',
115 |           items: { type: 'string' },
116 |           description: 'Paths to exclude from search (e.g., ["node_modules", "dist"])',
117 |         },
118 |         maxResults: {
119 |           type: 'number',
120 |           description: 'Maximum number of results to return',
121 |           default: 50,
122 |         },
123 |       },
124 |       required: ['url', 'query'],
125 |     },
126 |   },
127 |   {
128 |     name: 'get_file_dependencies',
129 |     description: 'Analyze dependencies and imports for a specific file',
130 |     inputSchema: {
131 |       type: 'object',
132 |       properties: {
133 |         url: {
134 |           type: 'string',
135 |           description: 'GitHub repository URL',
136 |         },
137 |         filePath: {
138 |           type: 'string',
139 |           description: 'Path to the file to analyze',
140 |         },
141 |         includeIndirect: {
142 |           type: 'boolean',
143 |           description: 'Include indirect dependencies',
144 |           default: false,
145 |         },
146 |         resolveModules: {
147 |           type: 'boolean',
148 |           description: 'Resolve module paths to actual files',
149 |           default: true,
150 |         },
151 |       },
152 |       required: ['url', 'filePath'],
153 |     },
154 |   },
155 |   {
156 |     name: 'analyze_file_complexity',
157 |     description: 'Analyze code complexity metrics for specific files',
158 |     inputSchema: {
159 |       type: 'object',
160 |       properties: {
161 |         url: {
162 |           type: 'string',
163 |           description: 'GitHub repository URL',
164 |         },
165 |         filePaths: {
166 |           type: 'array',
167 |           items: { type: 'string' },
168 |           description: 'Paths to files to analyze',
169 |         },
170 |         metrics: {
171 |           type: 'array',
172 |           items: { type: 'string' },
173 |           description: 'Complexity metrics to calculate (e.g., ["cyclomatic", "cognitive", "lines"])',
174 |         },
175 |       },
176 |       required: ['url', 'filePaths'],
177 |     },
178 |   },
179 |   {
180 |     name: 'get_file_history',
181 |     description: 'Get commit history and changes for specific files',
182 |     inputSchema: {
183 |       type: 'object',
184 |       properties: {
185 |         url: {
186 |           type: 'string',
187 |           description: 'GitHub repository URL',
188 |         },
189 |         filePath: {
190 |           type: 'string',
191 |           description: 'Path to the file',
192 |         },
193 |         maxCommits: {
194 |           type: 'number',
195 |           description: 'Maximum number of commits to retrieve',
196 |           default: 10,
197 |         },
198 |         includeDiff: {
199 |           type: 'boolean',
200 |           description: 'Include diff information',
201 |           default: false,
202 |         },
203 |       },
204 |       required: ['url', 'filePath'],
205 |     },
206 |   },
207 | ];
```

--------------------------------------------------------------------------------
/examples/basic-usage.js:
--------------------------------------------------------------------------------

```javascript
  1 | #!/usr/bin/env node
  2 | 
  3 | /**
  4 |  * Basic usage example for CodeCompass MCP Server
  5 |  * 
  6 |  * This example demonstrates how to use the CodeCompass MCP server
  7 |  * to analyze a GitHub repository and perform basic refactoring operations.
  8 |  */
  9 | 
 10 | import { MCPClient } from '@modelcontextprotocol/sdk/client/index.js';
 11 | import { StdioClientTransport } from '@modelcontextprotocol/sdk/client/stdio.js';
 12 | import { spawn } from 'child_process';
 13 | 
 14 | async function main() {
 15 |   // Start the MCP server
 16 |   const serverProcess = spawn('node', ['../build/index.js'], {
 17 |     stdio: ['pipe', 'pipe', 'pipe'],
 18 |   });
 19 | 
 20 |   // Create MCP client
 21 |   const transport = new StdioClientTransport({
 22 |     reader: serverProcess.stdout,
 23 |     writer: serverProcess.stdin,
 24 |   });
 25 | 
 26 |   const client = new MCPClient({
 27 |     name: 'codecompass-example',
 28 |     version: '1.0.0',
 29 |   });
 30 | 
 31 |   try {
 32 |     await client.connect(transport);
 33 | 
 34 |     console.log('🚀 Connected to CodeCompass MCP Server');
 35 |     console.log('📊 Starting repository analysis...\n');
 36 | 
 37 |     // Example 1: Analyze a popular React repository
 38 |     console.log('=== Example 1: Repository Analysis ===');
 39 |     const repoUrl = 'https://github.com/facebook/react';
 40 |     
 41 |     const analysis = await client.request({
 42 |       method: 'tools/call',
 43 |       params: {
 44 |         name: 'analyze_repository',
 45 |         arguments: {
 46 |           url: repoUrl,
 47 |           options: {
 48 |             includeTests: true,
 49 |             includeDocs: true,
 50 |             maxFiles: 20, // Limit for demo
 51 |           },
 52 |         },
 53 |       },
 54 |     });
 55 | 
 56 |     console.log('✅ Analysis complete:');
 57 |     console.log(`- Repository: ${JSON.parse(analysis.content[0].text).info.name}`);
 58 |     console.log(`- Language: ${JSON.parse(analysis.content[0].text).info.language}`);
 59 |     console.log(`- Files: ${JSON.parse(analysis.content[0].text).info.fileCount}`);
 60 |     console.log(`- Dependencies: ${JSON.parse(analysis.content[0].text).dependencies.length}`);
 61 |     console.log();
 62 | 
 63 |     // Example 2: Extract reusable components
 64 |     console.log('=== Example 2: Component Extraction ===');
 65 |     const components = await client.request({
 66 |       method: 'tools/call',
 67 |       params: {
 68 |         name: 'extract_reusable_components',
 69 |         arguments: {
 70 |           url: repoUrl,
 71 |           componentTypes: ['ui-components', 'hooks', 'utilities'],
 72 |         },
 73 |       },
 74 |     });
 75 | 
 76 |     const componentList = JSON.parse(components.content[0].text);
 77 |     console.log(`✅ Found ${componentList.length} reusable components:`);
 78 |     componentList.slice(0, 5).forEach((comp, i) => {
 79 |       console.log(`${i + 1}. ${comp.name} (${comp.type}) - Reusability: ${comp.reusabilityScore}%`);
 80 |     });
 81 |     console.log();
 82 | 
 83 |     // Example 3: Get file content
 84 |     console.log('=== Example 3: File Content Analysis ===');
 85 |     const fileContent = await client.request({
 86 |       method: 'tools/call',
 87 |       params: {
 88 |         name: 'get_file_content',
 89 |         arguments: {
 90 |           url: repoUrl,
 91 |           filePath: 'package.json',
 92 |         },
 93 |       },
 94 |     });
 95 | 
 96 |     const packageJson = JSON.parse(fileContent.content[0].text);
 97 |     console.log('✅ Package.json analysis:');
 98 |     console.log(`- Name: ${JSON.parse(packageJson).name}`);
 99 |     console.log(`- Version: ${JSON.parse(packageJson).version}`);
100 |     console.log(`- Description: ${JSON.parse(packageJson).description}`);
101 |     console.log();
102 | 
103 |     // Example 4: Code refactoring
104 |     console.log('=== Example 4: Code Refactoring ===');
105 |     const sampleCode = `
106 | var userName = "John Doe";
107 | var userEmail = "[email protected]";
108 | function getUserInfo() {
109 |   return userName + " - " + userEmail;
110 | }
111 | `;
112 | 
113 |     const refactoredCode = await client.request({
114 |       method: 'tools/call',
115 |       params: {
116 |         name: 'modernize_code',
117 |         arguments: {
118 |           code: sampleCode,
119 |           language: 'javascript',
120 |           targetVersion: 'ES2022',
121 |         },
122 |       },
123 |     });
124 | 
125 |     console.log('✅ Code modernization:');
126 |     console.log('Original:');
127 |     console.log(sampleCode);
128 |     console.log('Refactored:');
129 |     console.log(JSON.parse(refactoredCode.content[0].text).refactoredCode);
130 |     console.log();
131 | 
132 |     // Example 5: AI-powered chat (if OpenAI key is configured)
133 |     console.log('=== Example 5: AI-Powered Repository Chat ===');
134 |     try {
135 |       const chatResponse = await client.request({
136 |         method: 'tools/call',
137 |         params: {
138 |           name: 'chat_with_repository',
139 |           arguments: {
140 |             url: repoUrl,
141 |             message: 'What are the main architectural patterns used in this React codebase?',
142 |           },
143 |         },
144 |       });
145 | 
146 |       console.log('✅ AI Response:');
147 |       console.log(chatResponse.content[0].text);
148 |     } catch (error) {
149 |       console.log('⚠️  AI features require OpenAI API key configuration');
150 |     }
151 |     console.log();
152 | 
153 |     // Example 6: Generate project template
154 |     console.log('=== Example 6: Template Generation ===');
155 |     const template = await client.request({
156 |       method: 'tools/call',
157 |       params: {
158 |         name: 'generate_boilerplate',
159 |         arguments: {
160 |           url: repoUrl,
161 |           templateType: 'starter',
162 |           options: {
163 |             name: 'my-react-app',
164 |             framework: 'react',
165 |             includeTests: true,
166 |             includeDocs: true,
167 |           },
168 |         },
169 |       },
170 |     });
171 | 
172 |     const templateData = JSON.parse(template.content[0].text);
173 |     console.log('✅ Generated template:');
174 |     console.log(`- Name: ${templateData.name}`);
175 |     console.log(`- Files: ${templateData.files.length}`);
176 |     console.log(`- Dependencies: ${templateData.dependencies.length}`);
177 |     console.log();
178 | 
179 |     console.log('🎉 All examples completed successfully!');
180 |     console.log('💡 Try modifying the examples to explore different repositories and options.');
181 | 
182 |   } catch (error) {
183 |     console.error('❌ Error:', error.message);
184 |     console.error('💡 Make sure you have a valid GitHub token configured in your environment');
185 |   } finally {
186 |     await client.close();
187 |     serverProcess.kill();
188 |   }
189 | }
190 | 
191 | // Handle errors and cleanup
192 | process.on('SIGINT', () => {
193 |   console.log('\n👋 Goodbye!');
194 |   process.exit(0);
195 | });
196 | 
197 | process.on('unhandledRejection', (error) => {
198 |   console.error('❌ Unhandled error:', error);
199 |   process.exit(1);
200 | });
201 | 
202 | // Run the example
203 | main().catch(console.error);
```

--------------------------------------------------------------------------------
/scripts/docker-run.sh:
--------------------------------------------------------------------------------

```bash
  1 | #!/bin/bash
  2 | 
  3 | # CodeCompass MCP Docker Run Script
  4 | # Based on patterns from OpenRouter MCP repository
  5 | 
  6 | set -e
  7 | 
  8 | # Colors for output
  9 | RED='\033[0;31m'
 10 | GREEN='\033[0;32m'
 11 | YELLOW='\033[1;33m'
 12 | BLUE='\033[0;34m'
 13 | NC='\033[0m' # No Color
 14 | 
 15 | # Default values
 16 | CONTAINER_NAME="codecompass-mcp"
 17 | IMAGE_NAME="codecompass-mcp:latest"
 18 | DETACH=true
 19 | REMOVE_EXISTING=false
 20 | INTERACTIVE=false
 21 | PORT_MAPPING=""
 22 | ENV_FILE=""
 23 | MOUNT_VOLUMES=""
 24 | NETWORK="bridge"
 25 | 
 26 | # Function to display usage
 27 | show_usage() {
 28 |     echo "Usage: $0 [OPTIONS]"
 29 |     echo "Options:"
 30 |     echo "  -n, --name NAME        Container name (default: codecompass-mcp)"
 31 |     echo "  -i, --image IMAGE      Image to run (default: codecompass-mcp:latest)"
 32 |     echo "  -p, --port PORT        Port mapping (e.g., 8080:8080)"
 33 |     echo "  -e, --env KEY=VALUE    Environment variable"
 34 |     echo "  --env-file FILE        Environment file"
 35 |     echo "  -v, --volume SRC:DEST  Volume mapping"
 36 |     echo "  --network NETWORK      Network to use (default: bridge)"
 37 |     echo "  --interactive          Run in interactive mode"
 38 |     echo "  --foreground           Run in foreground (not detached)"
 39 |     echo "  --remove-existing      Remove existing container if it exists"
 40 |     echo "  -h, --help             Show this help message"
 41 |     echo ""
 42 |     echo "Examples:"
 43 |     echo "  $0                                    # Run with defaults"
 44 |     echo "  $0 --interactive                     # Run interactively"
 45 |     echo "  $0 --foreground --remove-existing    # Run in foreground, remove existing"
 46 |     echo "  $0 -e GITHUB_TOKEN=token -e OPENROUTER_API_KEY=key"
 47 |     echo "  $0 --env-file .env                   # Use environment file"
 48 |     echo "  $0 -v /host/data:/app/data          # Mount volume"
 49 | }
 50 | 
 51 | # Parse command line arguments
 52 | ENV_VARS=""
 53 | while [[ $# -gt 0 ]]; do
 54 |     case $1 in
 55 |         -n|--name)
 56 |             CONTAINER_NAME="$2"
 57 |             shift 2
 58 |             ;;
 59 |         -i|--image)
 60 |             IMAGE_NAME="$2"
 61 |             shift 2
 62 |             ;;
 63 |         -p|--port)
 64 |             PORT_MAPPING="$PORT_MAPPING -p $2"
 65 |             shift 2
 66 |             ;;
 67 |         -e|--env)
 68 |             ENV_VARS="$ENV_VARS -e $2"
 69 |             shift 2
 70 |             ;;
 71 |         --env-file)
 72 |             ENV_FILE="$2"
 73 |             shift 2
 74 |             ;;
 75 |         -v|--volume)
 76 |             MOUNT_VOLUMES="$MOUNT_VOLUMES -v $2"
 77 |             shift 2
 78 |             ;;
 79 |         --network)
 80 |             NETWORK="$2"
 81 |             shift 2
 82 |             ;;
 83 |         --interactive)
 84 |             INTERACTIVE=true
 85 |             DETACH=false
 86 |             shift
 87 |             ;;
 88 |         --foreground)
 89 |             DETACH=false
 90 |             shift
 91 |             ;;
 92 |         --remove-existing)
 93 |             REMOVE_EXISTING=true
 94 |             shift
 95 |             ;;
 96 |         -h|--help)
 97 |             show_usage
 98 |             exit 0
 99 |             ;;
100 |         *)
101 |             echo "Unknown option: $1"
102 |             show_usage
103 |             exit 1
104 |             ;;
105 |     esac
106 | done
107 | 
108 | echo -e "${BLUE}CodeCompass MCP Docker Run${NC}"
109 | echo -e "${BLUE}==========================${NC}"
110 | echo "Container: $CONTAINER_NAME"
111 | echo "Image: $IMAGE_NAME"
112 | echo "Network: $NETWORK"
113 | echo "Detached: $DETACH"
114 | echo "Interactive: $INTERACTIVE"
115 | echo ""
116 | 
117 | # Check if image exists
118 | if ! docker images --format "table {{.Repository}}:{{.Tag}}" | grep -q "$IMAGE_NAME"; then
119 |     echo -e "${RED}Error: Image '$IMAGE_NAME' not found${NC}"
120 |     echo "Build the image first with: ./scripts/docker-build.sh"
121 |     exit 1
122 | fi
123 | 
124 | # Remove existing container if requested
125 | if [ "$REMOVE_EXISTING" = true ]; then
126 |     if docker ps -a --format "table {{.Names}}" | grep -q "^$CONTAINER_NAME$"; then
127 |         echo -e "${YELLOW}Removing existing container...${NC}"
128 |         docker rm -f "$CONTAINER_NAME" 2>/dev/null || true
129 |     fi
130 | fi
131 | 
132 | # Check if container already exists
133 | if docker ps -a --format "table {{.Names}}" | grep -q "^$CONTAINER_NAME$"; then
134 |     echo -e "${YELLOW}Container '$CONTAINER_NAME' already exists${NC}"
135 |     
136 |     # Check if it's running
137 |     if docker ps --format "table {{.Names}}" | grep -q "^$CONTAINER_NAME$"; then
138 |         echo -e "${GREEN}Container is already running${NC}"
139 |         echo "Use 'docker logs $CONTAINER_NAME' to see logs"
140 |         echo "Use 'docker exec -it $CONTAINER_NAME /bin/bash' to connect"
141 |         exit 0
142 |     else
143 |         echo -e "${YELLOW}Starting existing container...${NC}"
144 |         docker start "$CONTAINER_NAME"
145 |         echo -e "${GREEN}✓ Container started${NC}"
146 |         exit 0
147 |     fi
148 | fi
149 | 
150 | # Build docker run command
151 | DOCKER_CMD="docker run"
152 | 
153 | if [ "$DETACH" = true ]; then
154 |     DOCKER_CMD="$DOCKER_CMD -d"
155 | fi
156 | 
157 | if [ "$INTERACTIVE" = true ]; then
158 |     DOCKER_CMD="$DOCKER_CMD -it"
159 | fi
160 | 
161 | DOCKER_CMD="$DOCKER_CMD --name $CONTAINER_NAME"
162 | DOCKER_CMD="$DOCKER_CMD --network $NETWORK"
163 | 
164 | if [ -n "$PORT_MAPPING" ]; then
165 |     DOCKER_CMD="$DOCKER_CMD $PORT_MAPPING"
166 | fi
167 | 
168 | if [ -n "$ENV_VARS" ]; then
169 |     DOCKER_CMD="$DOCKER_CMD $ENV_VARS"
170 | fi
171 | 
172 | if [ -n "$ENV_FILE" ]; then
173 |     if [ -f "$ENV_FILE" ]; then
174 |         DOCKER_CMD="$DOCKER_CMD --env-file $ENV_FILE"
175 |     else
176 |         echo -e "${RED}Error: Environment file '$ENV_FILE' not found${NC}"
177 |         exit 1
178 |     fi
179 | fi
180 | 
181 | if [ -n "$MOUNT_VOLUMES" ]; then
182 |     DOCKER_CMD="$DOCKER_CMD $MOUNT_VOLUMES"
183 | fi
184 | 
185 | DOCKER_CMD="$DOCKER_CMD $IMAGE_NAME"
186 | 
187 | if [ "$INTERACTIVE" = true ]; then
188 |     DOCKER_CMD="$DOCKER_CMD /bin/bash"
189 | fi
190 | 
191 | echo -e "${YELLOW}Running container...${NC}"
192 | echo "Command: $DOCKER_CMD"
193 | echo ""
194 | 
195 | # Execute the command
196 | eval $DOCKER_CMD
197 | 
198 | if [ $? -eq 0 ]; then
199 |     echo -e "${GREEN}✓ Container started successfully${NC}"
200 |     
201 |     if [ "$DETACH" = true ]; then
202 |         echo ""
203 |         echo "Container '$CONTAINER_NAME' is running in the background"
204 |         echo ""
205 |         echo "Useful commands:"
206 |         echo "  docker logs $CONTAINER_NAME          # View logs"
207 |         echo "  docker logs -f $CONTAINER_NAME       # Follow logs"
208 |         echo "  docker exec -it $CONTAINER_NAME /bin/bash  # Connect to container"
209 |         echo "  docker stop $CONTAINER_NAME          # Stop container"
210 |         echo "  docker rm $CONTAINER_NAME            # Remove container"
211 |         echo ""
212 |         echo "Health check:"
213 |         echo "  docker exec $CONTAINER_NAME node -e \"console.log('Server is running')\""
214 |     fi
215 | else
216 |     echo -e "${RED}✗ Failed to start container${NC}"
217 |     exit 1
218 | fi
```

--------------------------------------------------------------------------------
/src/types/responses.ts:
--------------------------------------------------------------------------------

```typescript
  1 | /**
  2 |  * Standardized response types for CodeCompass MCP Server
  3 |  * Based on MCP protocol and best practices from real-world implementations
  4 |  */
  5 | 
  6 | export interface ToolResponse<T = any> {
  7 |   success: boolean;
  8 |   data?: T;
  9 |   error?: {
 10 |     code: string;
 11 |     message: string;
 12 |     details?: any;
 13 |     suggestion?: string;
 14 |     timestamp?: string;
 15 |     context?: {
 16 |       tool?: string;
 17 |       url?: string;
 18 |       query?: string;
 19 |     };
 20 |   };
 21 |   metadata?: {
 22 |     processing_time: number;
 23 |     rate_limit_remaining?: number;
 24 |     cache_hit?: boolean;
 25 |     continuation_id?: string;
 26 |   };
 27 | }
 28 | 
 29 | export interface RepositoryData {
 30 |   info: {
 31 |     name: string;
 32 |     description: string | null;
 33 |     owner: string;
 34 |     stars: number;
 35 |     language: string | null;
 36 |     languages: Record<string, number>;
 37 |     license?: string;
 38 |     defaultBranch: string;
 39 |     createdAt: string;
 40 |     updatedAt: string;
 41 |   };
 42 |   structure: {
 43 |     fileCount: number;
 44 |     lineCount: number;
 45 |     fileTree: FileNode[];
 46 |     keyFiles: Record<string, string>;
 47 |   };
 48 |   dependencies: {
 49 |     external: DependencyInfo[];
 50 |     internal: Record<string, string[]>;
 51 |     security: SecurityIssue[];
 52 |   };
 53 | }
 54 | 
 55 | export interface FileNode {
 56 |   name: string;
 57 |   path: string;
 58 |   type: 'file' | 'directory';
 59 |   size?: number;
 60 |   children?: FileNode[];
 61 |   language?: string;
 62 |   complexity?: number;
 63 | }
 64 | 
 65 | export interface DependencyInfo {
 66 |   name: string;
 67 |   version: string;
 68 |   type: 'dependency' | 'devDependency' | 'peerDependency';
 69 |   source: string;
 70 |   security?: {
 71 |     vulnerabilities: number;
 72 |     risk: 'low' | 'medium' | 'high';
 73 |   };
 74 | }
 75 | 
 76 | export interface SecurityIssue {
 77 |   type: 'high' | 'medium' | 'low';
 78 |   description: string;
 79 |   file: string;
 80 |   line?: number;
 81 |   suggestion: string;
 82 | }
 83 | 
 84 | export interface CodeStructure {
 85 |   functions: FunctionInfo[];
 86 |   classes: ClassInfo[];
 87 |   imports: ImportInfo[];
 88 |   exports: ExportInfo[];
 89 |   complexity: {
 90 |     cyclomatic: number;
 91 |     cognitive: number;
 92 |     maintainability: number;
 93 |   };
 94 | }
 95 | 
 96 | export interface FunctionInfo {
 97 |   name: string;
 98 |   signature: string;
 99 |   startLine: number;
100 |   endLine: number;
101 |   complexity: number;
102 |   parameters: ParameterInfo[];
103 |   returnType?: string;
104 |   documentation?: string;
105 | }
106 | 
107 | export interface ClassInfo {
108 |   name: string;
109 |   methods: FunctionInfo[];
110 |   properties: PropertyInfo[];
111 |   extends?: string;
112 |   implements?: string[];
113 | }
114 | 
115 | export interface ImportInfo {
116 |   source: string;
117 |   imports: string[];
118 |   type: 'import' | 'require' | 'dynamic';
119 |   isExternal: boolean;
120 | }
121 | 
122 | export interface ExportInfo {
123 |   name: string;
124 |   type: 'function' | 'class' | 'variable' | 'default';
125 |   isDefault: boolean;
126 | }
127 | 
128 | export interface ParameterInfo {
129 |   name: string;
130 |   type?: string;
131 |   optional: boolean;
132 |   defaultValue?: string;
133 | }
134 | 
135 | export interface PropertyInfo {
136 |   name: string;
137 |   type?: string;
138 |   visibility: 'public' | 'private' | 'protected';
139 |   static: boolean;
140 | }
141 | 
142 | export interface TransformedCode {
143 |   originalCode: string;
144 |   transformedCode: string;
145 |   changes: CodeChange[];
146 |   warnings: string[];
147 |   instructions: string[];
148 | }
149 | 
150 | export interface CodeChange {
151 |   type: 'add' | 'remove' | 'modify' | 'move';
152 |   file: string;
153 |   line?: number;
154 |   description: string;
155 |   before?: string;
156 |   after?: string;
157 | }
158 | 
159 | export interface ExtractedComponent {
160 |   name: string;
161 |   type: 'component' | 'hook' | 'utility' | 'service' | 'type';
162 |   path: string;
163 |   code: string;
164 |   dependencies: string[];
165 |   reusabilityScore: number;
166 |   complexity: number;
167 |   documentation: string;
168 |   examples: string[];
169 | }
170 | 
171 | export interface ProjectTemplate {
172 |   name: string;
173 |   description: string;
174 |   type: 'starter' | 'library' | 'microservice' | 'fullstack';
175 |   files: TemplateFile[];
176 |   dependencies: string[];
177 |   devDependencies: string[];
178 |   scripts: Record<string, string>;
179 |   configuration: Record<string, any>;
180 |   instructions: string[];
181 | }
182 | 
183 | export interface TemplateFile {
184 |   path: string;
185 |   content: string;
186 |   type: 'source' | 'config' | 'test' | 'docs';
187 |   language?: string;
188 |   executable?: boolean;
189 | }
190 | 
191 | export interface ArchitectureAnalysis {
192 |   patterns: DetectedPattern[];
193 |   frameworks: string[];
194 |   structure: ProjectStructure;
195 |   entryPoints: string[];
196 |   configFiles: string[];
197 |   conventions: string[];
198 | }
199 | 
200 | export interface DetectedPattern {
201 |   name: string;
202 |   confidence: number;
203 |   files: string[];
204 |   description: string;
205 |   examples: string[];
206 | }
207 | 
208 | export interface ProjectStructure {
209 |   type: 'monorepo' | 'single-package' | 'multi-package';
210 |   folders: Record<string, string>;
211 |   conventions: string[];
212 | }
213 | 
214 | export interface CodeMetrics {
215 |   complexity: {
216 |     cyclomatic: number;
217 |     cognitive: number;
218 |     maintainability: number;
219 |   };
220 |   quality: {
221 |     score: number;
222 |     issues: QualityIssue[];
223 |   };
224 |   size: {
225 |     lines: number;
226 |     files: number;
227 |     functions: number;
228 |     classes: number;
229 |   };
230 |   dependencies: {
231 |     external: number;
232 |     internal: number;
233 |     circular: string[];
234 |   };
235 | }
236 | 
237 | export interface QualityIssue {
238 |   type: 'complexity' | 'duplication' | 'maintainability' | 'security';
239 |   severity: 'low' | 'medium' | 'high';
240 |   description: string;
241 |   file: string;
242 |   line?: number;
243 |   suggestion: string;
244 | }
245 | 
246 | export interface SearchResult {
247 |   query: string;
248 |   results: SearchMatch[];
249 |   totalMatches: number;
250 |   filesSearched: number;
251 |   searchTime: number;
252 | }
253 | 
254 | export interface SearchMatch {
255 |   file: string;
256 |   line: number;
257 |   content: string;
258 |   context: string[];
259 |   type: 'exact' | 'partial' | 'regex';
260 | }
261 | 
262 | export interface BatchOperation {
263 |   operations: BatchOperationItem[];
264 |   results: BatchOperationResult[];
265 |   totalTime: number;
266 |   successCount: number;
267 |   failureCount: number;
268 | }
269 | 
270 | export interface BatchOperationItem {
271 |   type: string;
272 |   params: any;
273 |   id: string;
274 | }
275 | 
276 | export interface BatchOperationResult {
277 |   id: string;
278 |   success: boolean;
279 |   data?: any;
280 |   error?: string;
281 |   processingTime: number;
282 | }
283 | 
284 | // Error codes for consistent error handling
285 | export const ErrorCodes = {
286 |   INVALID_INPUT: 'INVALID_INPUT',
287 |   REPOSITORY_NOT_FOUND: 'REPOSITORY_NOT_FOUND',
288 |   RATE_LIMIT_EXCEEDED: 'RATE_LIMIT_EXCEEDED',
289 |   AUTHENTICATION_FAILED: 'AUTHENTICATION_FAILED',
290 |   FILE_NOT_FOUND: 'FILE_NOT_FOUND',
291 |   PARSE_ERROR: 'PARSE_ERROR',
292 |   PROCESSING_ERROR: 'PROCESSING_ERROR',
293 |   NETWORK_ERROR: 'NETWORK_ERROR',
294 |   TIMEOUT: 'TIMEOUT',
295 |   INTERNAL_ERROR: 'INTERNAL_ERROR',
296 | } as const;
297 | 
298 | export type ErrorCode = typeof ErrorCodes[keyof typeof ErrorCodes];
```

--------------------------------------------------------------------------------
/src/utils/config.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { z } from 'zod';
  2 | 
  3 | // Configuration schema with validation
  4 | const ConfigSchema = z.object({
  5 |   // GitHub Configuration
  6 |   github: z.object({
  7 |     token: z.string().optional(),
  8 |     apiUrl: z.string().default('https://api.github.com'),
  9 |     maxRetries: z.number().default(3),
 10 |     retryDelay: z.number().default(1000),
 11 |     rateLimitBuffer: z.number().default(10),
 12 |   }),
 13 |   
 14 |   // OpenRouter/AI Configuration
 15 |   openrouter: z.object({
 16 |     apiKey: z.string().optional(),
 17 |     apiUrl: z.string().default('https://openrouter.ai/api/v1'),
 18 |     defaultModel: z.string().default('anthropic/claude-3.5-sonnet'),
 19 |     maxRetries: z.number().default(3),
 20 |     timeout: z.number().default(30000),
 21 |   }),
 22 |   
 23 |   // Response Management
 24 |   response: z.object({
 25 |     maxTokens: z.number().default(25000),
 26 |     maxFileContentLength: z.number().default(1000),
 27 |     chunkSizes: z.object({
 28 |       small: z.object({
 29 |         tokens: z.number().default(10000),
 30 |         fileContent: z.number().default(500),
 31 |         filesPerChunk: z.number().default(10),
 32 |       }),
 33 |       medium: z.object({
 34 |         tokens: z.number().default(20000),
 35 |         fileContent: z.number().default(1000),
 36 |         filesPerChunk: z.number().default(20),
 37 |       }),
 38 |       large: z.object({
 39 |         tokens: z.number().default(40000),
 40 |         fileContent: z.number().default(2000),
 41 |         filesPerChunk: z.number().default(40),
 42 |       }),
 43 |     }),
 44 |   }),
 45 |   
 46 |   // Cache Configuration
 47 |   cache: z.object({
 48 |     enabled: z.boolean().default(true),
 49 |     ttl: z.number().default(300000), // 5 minutes
 50 |     maxSize: z.number().default(100),
 51 |   }),
 52 |   
 53 |   // Logging Configuration
 54 |   logging: z.object({
 55 |     level: z.enum(['debug', 'info', 'warn', 'error']).default('info'),
 56 |     enableTimestamps: z.boolean().default(true),
 57 |     enableColors: z.boolean().default(true),
 58 |   }),
 59 |   
 60 |   // Processing Limits
 61 |   limits: z.object({
 62 |     maxFiles: z.number().default(100),
 63 |     maxFileSize: z.number().default(1024 * 1024), // 1MB
 64 |     maxProcessingTime: z.number().default(60000), // 1 minute
 65 |     maxConcurrentRequests: z.number().default(5),
 66 |   }),
 67 | });
 68 | 
 69 | export type Config = z.infer<typeof ConfigSchema>;
 70 | 
 71 | // Environment variable mappings
 72 | const ENV_MAPPINGS = {
 73 |   'GITHUB_TOKEN': 'github.token',
 74 |   'GITHUB_API_URL': 'github.apiUrl',
 75 |   'OPENROUTER_API_KEY': 'openrouter.apiKey',
 76 |   'OPENROUTER_API_URL': 'openrouter.apiUrl',
 77 |   'OPENAI_MODEL': 'openrouter.defaultModel',
 78 |   'MAX_RESPONSE_TOKENS': 'response.maxTokens',
 79 |   'MAX_FILE_CONTENT_LENGTH': 'response.maxFileContentLength',
 80 |   'CACHE_ENABLED': 'cache.enabled',
 81 |   'CACHE_TTL': 'cache.ttl',
 82 |   'LOG_LEVEL': 'logging.level',
 83 |   'MAX_FILES': 'limits.maxFiles',
 84 |   'MAX_FILE_SIZE': 'limits.maxFileSize',
 85 |   'MAX_PROCESSING_TIME': 'limits.maxProcessingTime',
 86 | };
 87 | 
 88 | // Helper to set nested object property
 89 | function setNestedProperty(obj: any, path: string, value: any) {
 90 |   const keys = path.split('.');
 91 |   let current = obj;
 92 |   
 93 |   for (let i = 0; i < keys.length - 1; i++) {
 94 |     const key = keys[i];
 95 |     if (!(key in current)) {
 96 |       current[key] = {};
 97 |     }
 98 |     current = current[key];
 99 |   }
100 |   
101 |   const finalKey = keys[keys.length - 1];
102 |   current[finalKey] = value;
103 | }
104 | 
105 | // Helper to parse environment variable value
106 | function parseEnvValue(value: string): any {
107 |   // Try to parse as number
108 |   if (/^\d+$/.test(value)) {
109 |     return parseInt(value, 10);
110 |   }
111 |   
112 |   // Try to parse as boolean
113 |   if (value.toLowerCase() === 'true') return true;
114 |   if (value.toLowerCase() === 'false') return false;
115 |   
116 |   // Return as string
117 |   return value;
118 | }
119 | 
120 | // Load configuration from environment variables
121 | function loadConfigFromEnv(): Partial<Config> {
122 |   const config: any = {};
123 |   
124 |   for (const [envKey, configPath] of Object.entries(ENV_MAPPINGS)) {
125 |     const envValue = process.env[envKey];
126 |     if (envValue) {
127 |       setNestedProperty(config, configPath, parseEnvValue(envValue));
128 |     }
129 |   }
130 |   
131 |   return config;
132 | }
133 | 
134 | // Create and validate configuration
135 | export function createConfig(): Config {
136 |   const envConfig = loadConfigFromEnv();
137 |   
138 |   // Provide defaults for missing configuration sections
139 |   const configWithDefaults = {
140 |     github: {
141 |       token: process.env.GITHUB_TOKEN || '',
142 |       ...envConfig.github
143 |     },
144 |     openrouter: {
145 |       apiKey: process.env.OPENROUTER_API_KEY || '',
146 |       defaultModel: 'anthropic/claude-3.5-sonnet',
147 |       ...envConfig.openrouter
148 |     },
149 |     response: {
150 |       maxTokens: 25000,
151 |       maxFileContentLength: 5000,
152 |       chunkSizes: {
153 |         small: { filesPerChunk: 5, fileContent: 1000 },
154 |         medium: { filesPerChunk: 10, fileContent: 2000 },
155 |         large: { filesPerChunk: 20, fileContent: 5000 }
156 |       },
157 |       ...envConfig.response
158 |     },
159 |     cache: {
160 |       enabled: true,
161 |       ttl: 3600,
162 |       ...envConfig.cache
163 |     },
164 |     logging: {
165 |       level: 'info',
166 |       enableTimestamps: true,
167 |       enableColors: true,
168 |       ...envConfig.logging
169 |     },
170 |     limits: {
171 |       maxFiles: 100,
172 |       maxFileSize: 10 * 1024 * 1024, // 10MB
173 |       maxProcessingTime: 30000, // 30 seconds
174 |       maxConcurrentRequests: 10,
175 |       ...envConfig.limits
176 |     }
177 |   };
178 |   
179 |   // Validate the configuration
180 |   const config = ConfigSchema.parse(configWithDefaults);
181 |   
182 |   // Validate required fields for functionality
183 |   const warnings: string[] = [];
184 |   
185 |   if (!config.github.token && !config.openrouter.apiKey) {
186 |     warnings.push('Warning: Neither GITHUB_TOKEN nor OPENROUTER_API_KEY is set. Some features may be limited.');
187 |   }
188 |   
189 |   if (warnings.length > 0) {
190 |     console.warn(warnings.join('\n'));
191 |   }
192 |   
193 |   return config;
194 | }
195 | 
196 | // Global configuration instance
197 | let globalConfig: Config | null = null;
198 | 
199 | export function getConfig(): Config {
200 |   if (!globalConfig) {
201 |     globalConfig = createConfig();
202 |   }
203 |   return globalConfig;
204 | }
205 | 
206 | // Configuration validation helper
207 | export function validateConfig(config: Partial<Config>): boolean {
208 |   try {
209 |     ConfigSchema.parse(config);
210 |     return true;
211 |   } catch (error) {
212 |     console.error('Configuration validation error:', error);
213 |     return false;
214 |   }
215 | }
216 | 
217 | // Get model aliases for user-friendly names
218 | export function getModelAliases(): Record<string, string> {
219 |   return {
220 |     'claude-3-sonnet': 'anthropic/claude-3.5-sonnet',
221 |     'claude-3-opus': 'anthropic/claude-3-opus',
222 |     'claude-3-haiku': 'anthropic/claude-3-haiku',
223 |     'gpt-4': 'openai/gpt-4',
224 |     'gpt-4-turbo': 'openai/gpt-4-turbo',
225 |     'gpt-4o': 'openai/gpt-4o',
226 |     'gpt-4o-mini': 'openai/gpt-4o-mini',
227 |     'gemini-pro': 'google/gemini-pro',
228 |     'gemini-1.5-pro': 'google/gemini-1.5-pro',
229 |   };
230 | }
231 | 
232 | // Resolve model alias to full model name
233 | export function resolveModelAlias(model: string): string {
234 |   const aliases = getModelAliases();
235 |   return aliases[model] || model;
236 | }
```

--------------------------------------------------------------------------------
/src/types/index.ts:
--------------------------------------------------------------------------------

```typescript
  1 | export interface FileNode {
  2 |   name: string;
  3 |   path: string;
  4 |   type: 'file' | 'directory';
  5 |   children?: FileNode[];
  6 |   size?: number;
  7 |   sha?: string;
  8 | }
  9 | 
 10 | export interface GitHubRepoInfo {
 11 |   name: string;
 12 |   description: string | null;
 13 |   owner: string;
 14 |   stars: number;
 15 |   language: string | null;
 16 |   languages: Record<string, number>;
 17 |   fileCount: number;
 18 |   lineCount: number;
 19 |   fileTree: FileNode[];
 20 |   keyFiles: Record<string, string>;
 21 |   license?: string;
 22 |   defaultBranch: string;
 23 |   createdAt: string;
 24 |   updatedAt: string;
 25 | }
 26 | 
 27 | export interface DependencyInfo {
 28 |   name: string;
 29 |   version: string;
 30 |   type: 'dependency' | 'devDependency' | 'peerDependency';
 31 |   source: string; // package.json, requirements.txt, etc.
 32 | }
 33 | 
 34 | export interface RepositoryAnalysis {
 35 |   info: GitHubRepoInfo;
 36 |   dependencies: DependencyInfo[];
 37 |   architecture: ArchitectureAnalysis;
 38 |   codeQuality: CodeQualityMetrics;
 39 |   refactoringPotential: RefactoringPotential;
 40 | }
 41 | 
 42 | export interface ArchitectureAnalysis {
 43 |   patterns: string[];
 44 |   frameworks: string[];
 45 |   structure: ProjectStructure;
 46 |   entryPoints: string[];
 47 |   configFiles: string[];
 48 |   testFiles: string[];
 49 |   documentationFiles: string[];
 50 | }
 51 | 
 52 | export interface ProjectStructure {
 53 |   type: 'monorepo' | 'single-package' | 'multi-package';
 54 |   folders: {
 55 |     src?: string;
 56 |     tests?: string;
 57 |     docs?: string;
 58 |     config?: string;
 59 |     build?: string;
 60 |     public?: string;
 61 |   };
 62 | }
 63 | 
 64 | export interface CodeQualityMetrics {
 65 |   complexity: number;
 66 |   maintainability: number;
 67 |   testCoverage?: number;
 68 |   duplicateCode: number;
 69 |   codeSmells: string[];
 70 | }
 71 | 
 72 | export interface RefactoringPotential {
 73 |   extractableComponents: ExtractableComponent[];
 74 |   reusableUtilities: ReusableUtility[];
 75 |   configurationFiles: string[];
 76 |   boilerplateCode: string[];
 77 |   modernizationOpportunities: ModernizationOpportunity[];
 78 | }
 79 | 
 80 | export interface ExtractableComponent {
 81 |   name: string;
 82 |   path: string;
 83 |   type: 'component' | 'hook' | 'utility' | 'service' | 'model';
 84 |   dependencies: string[];
 85 |   complexity: number;
 86 |   reusabilityScore: number;
 87 |   description: string;
 88 | }
 89 | 
 90 | export interface ReusableUtility {
 91 |   name: string;
 92 |   path: string;
 93 |   functions: string[];
 94 |   description: string;
 95 |   dependencies: string[];
 96 | }
 97 | 
 98 | export interface ModernizationOpportunity {
 99 |   type: 'syntax' | 'dependency' | 'pattern' | 'performance';
100 |   description: string;
101 |   files: string[];
102 |   suggestion: string;
103 |   impact: 'low' | 'medium' | 'high';
104 | }
105 | 
106 | export interface RefactorOptions {
107 |   targetFramework?: string;
108 |   targetLanguage?: string;
109 |   namingConvention?: NamingConvention;
110 |   modernizationLevel?: 'minimal' | 'moderate' | 'aggressive';
111 |   removeProjectSpecific?: boolean;
112 |   extractComponents?: boolean;
113 |   optimizeForPerformance?: boolean;
114 |   addTypeScript?: boolean;
115 | }
116 | 
117 | export interface NamingConvention {
118 |   variables: 'camelCase' | 'snake_case' | 'kebab-case' | 'PascalCase';
119 |   functions: 'camelCase' | 'snake_case' | 'kebab-case' | 'PascalCase';
120 |   classes: 'PascalCase' | 'camelCase' | 'snake_case';
121 |   files: 'camelCase' | 'snake_case' | 'kebab-case' | 'PascalCase';
122 |   folders: 'camelCase' | 'snake_case' | 'kebab-case' | 'PascalCase';
123 | }
124 | 
125 | export interface RefactorResult {
126 |   originalCode: string;
127 |   refactoredCode: string;
128 |   changes: RefactorChange[];
129 |   warnings: string[];
130 |   dependencies: string[];
131 |   instructions: string[];
132 | }
133 | 
134 | export interface RefactorChange {
135 |   type: 'add' | 'remove' | 'modify' | 'move';
136 |   file: string;
137 |   line?: number;
138 |   description: string;
139 |   oldValue?: string;
140 |   newValue?: string;
141 | }
142 | 
143 | export interface TemplateOptions {
144 |   name: string;
145 |   description: string;
146 |   framework?: string;
147 |   language?: string;
148 |   includeTests?: boolean;
149 |   includeDocs?: boolean;
150 |   includeConfig?: boolean;
151 | }
152 | 
153 | export interface GeneratedTemplate {
154 |   name: string;
155 |   description: string;
156 |   files: TemplateFile[];
157 |   dependencies: string[];
158 |   scripts: Record<string, string>;
159 |   instructions: string[];
160 | }
161 | 
162 | export interface TemplateFile {
163 |   path: string;
164 |   content: string;
165 |   type: 'source' | 'config' | 'test' | 'documentation';
166 |   language?: string;
167 | }
168 | 
169 | export interface ComponentLibrary {
170 |   name: string;
171 |   description: string;
172 |   components: LibraryComponent[];
173 |   utilities: LibraryUtility[];
174 |   types: LibraryType[];
175 |   styles: LibraryStyle[];
176 |   documentation: string;
177 |   packageJson: any;
178 | }
179 | 
180 | export interface LibraryComponent {
181 |   name: string;
182 |   path: string;
183 |   props: ComponentProp[];
184 |   examples: string[];
185 |   documentation: string;
186 |   dependencies: string[];
187 | }
188 | 
189 | export interface ComponentProp {
190 |   name: string;
191 |   type: string;
192 |   required: boolean;
193 |   description: string;
194 |   defaultValue?: string;
195 | }
196 | 
197 | export interface LibraryUtility {
198 |   name: string;
199 |   path: string;
200 |   functions: UtilityFunction[];
201 |   documentation: string;
202 | }
203 | 
204 | export interface UtilityFunction {
205 |   name: string;
206 |   parameters: FunctionParameter[];
207 |   returnType: string;
208 |   description: string;
209 |   examples: string[];
210 | }
211 | 
212 | export interface FunctionParameter {
213 |   name: string;
214 |   type: string;
215 |   required: boolean;
216 |   description: string;
217 |   defaultValue?: string;
218 | }
219 | 
220 | export interface LibraryType {
221 |   name: string;
222 |   definition: string;
223 |   description: string;
224 |   examples: string[];
225 | }
226 | 
227 | export interface LibraryStyle {
228 |   name: string;
229 |   path: string;
230 |   content: string;
231 |   type: 'css' | 'scss' | 'styled-components' | 'tailwind';
232 | }
233 | 
234 | export interface ChatContext {
235 |   repositoryUrl: string;
236 |   currentFile?: string;
237 |   selectedCode?: string;
238 |   conversationHistory: ChatMessage[];
239 |   refactoringGoals?: string[];
240 | }
241 | 
242 | export interface ChatMessage {
243 |   role: 'user' | 'assistant' | 'system';
244 |   content: string;
245 |   timestamp: Date;
246 | }
247 | 
248 | export interface RefactoringPlan {
249 |   overview: string;
250 |   phases: RefactoringPhase[];
251 |   estimatedTimeHours: number;
252 |   risks: string[];
253 |   recommendations: string[];
254 | }
255 | 
256 | export interface RefactoringPhase {
257 |   name: string;
258 |   description: string;
259 |   tasks: RefactoringTask[];
260 |   estimatedTimeHours: number;
261 |   dependencies: string[];
262 | }
263 | 
264 | export interface RefactoringTask {
265 |   name: string;
266 |   description: string;
267 |   type: 'extract' | 'transform' | 'modernize' | 'optimize' | 'test';
268 |   files: string[];
269 |   estimatedTimeHours: number;
270 |   priority: 'low' | 'medium' | 'high';
271 | }
272 | 
273 | export interface ArchitectureExplanation {
274 |   overview: string;
275 |   patterns: PatternExplanation[];
276 |   structure: StructureExplanation;
277 |   dataFlow: DataFlowExplanation;
278 |   dependencies: DependencyExplanation[];
279 |   recommendations: string[];
280 | }
281 | 
282 | export interface PatternExplanation {
283 |   name: string;
284 |   description: string;
285 |   usage: string;
286 |   files: string[];
287 |   benefits: string[];
288 |   drawbacks: string[];
289 | }
290 | 
291 | export interface StructureExplanation {
292 |   type: string;
293 |   description: string;
294 |   folders: FolderExplanation[];
295 |   conventions: string[];
296 | }
297 | 
298 | export interface FolderExplanation {
299 |   name: string;
300 |   purpose: string;
301 |   files: string[];
302 |   conventions: string[];
303 | }
304 | 
305 | export interface DataFlowExplanation {
306 |   overview: string;
307 |   entryPoints: string[];
308 |   dataStores: string[];
309 |   apiEndpoints: string[];
310 |   eventHandlers: string[];
311 | }
312 | 
313 | export interface DependencyExplanation {
314 |   name: string;
315 |   version: string;
316 |   purpose: string;
317 |   usage: string;
318 |   alternatives: string[];
319 |   removalComplexity: 'low' | 'medium' | 'high';
320 | }
321 | 
322 | export interface ValidationResult {
323 |   isValid: boolean;
324 |   errors: string[];
325 |   warnings: string[];
326 | }
327 | 
328 | export interface SecurityCheck {
329 |   passed: boolean;
330 |   issues: SecurityIssue[];
331 |   recommendations: string[];
332 | }
333 | 
334 | export interface SecurityIssue {
335 |   type: 'high' | 'medium' | 'low';
336 |   description: string;
337 |   file: string;
338 |   line?: number;
339 |   suggestion: string;
340 | }
```

--------------------------------------------------------------------------------
/docs/MONITORING.md:
--------------------------------------------------------------------------------

```markdown
  1 | # Monitoring and Logging Guide
  2 | 
  3 | CodeCompass MCP includes comprehensive monitoring and logging capabilities inspired by enterprise-grade systems and OpenRouter MCP patterns.
  4 | 
  5 | ## Overview
  6 | 
  7 | The monitoring system provides:
  8 | - **Real-time Metrics**: Request counts, response times, error rates, memory usage
  9 | - **Performance Insights**: Slowest tools, error-prone operations, peak usage analysis
 10 | - **Structured Logging**: JSON and console formats with contextual information
 11 | - **Health Checks**: System status monitoring with configurable thresholds
 12 | - **Interactive Dashboard**: Real-time command-line monitoring interface
 13 | 
 14 | ## Quick Start
 15 | 
 16 | ### View Current Status
 17 | 
 18 | ```bash
 19 | # Single health check
 20 | npm run monitor
 21 | 
 22 | # Interactive dashboard (refreshes every 5 seconds)
 23 | npm run monitor -- --watch
 24 | 
 25 | # Export metrics to JSON
 26 | npm run monitor -- --export > metrics.json
 27 | ```
 28 | 
 29 | ### Using the Health Check Tool
 30 | 
 31 | ```bash
 32 | # Basic health check
 33 | curl -X POST http://localhost:3000/health \
 34 |   -H "Content-Type: application/json" \
 35 |   -d '{"name": "health_check"}'
 36 | 
 37 | # Comprehensive health check with insights
 38 | curl -X POST http://localhost:3000/health \
 39 |   -H "Content-Type: application/json" \
 40 |   -d '{
 41 |     "name": "health_check",
 42 |     "arguments": {
 43 |       "checks": ["api-limits", "system-health", "monitoring", "configuration"],
 44 |       "options": {
 45 |         "include_metrics": true,
 46 |         "include_insights": true,
 47 |         "include_logs": true
 48 |       }
 49 |     }
 50 |   }'
 51 | ```
 52 | 
 53 | ## Monitoring Features
 54 | 
 55 | ### 1. System Metrics
 56 | 
 57 | The monitoring system tracks:
 58 | 
 59 | - **Memory Usage**: Heap usage, RSS, external memory
 60 | - **Request Metrics**: Total requests, error count, response times
 61 | - **Tool Usage**: Per-tool statistics and performance
 62 | - **Uptime**: Server uptime and availability
 63 | 
 64 | ### 2. Performance Insights
 65 | 
 66 | Automatic analysis provides:
 67 | 
 68 | - **Slowest Tools**: Tools with highest average response times
 69 | - **Error-Prone Operations**: Tools with highest error rates
 70 | - **Peak Usage Hours**: Hourly request distribution
 71 | - **Recommendations**: Actionable performance improvements
 72 | 
 73 | ### 3. Health Status
 74 | 
 75 | Multi-level health checks:
 76 | 
 77 | - **Healthy**: All systems operating normally
 78 | - **Degraded**: Some performance issues detected
 79 | - **Unhealthy**: Critical issues requiring attention
 80 | 
 81 | Health checks monitor:
 82 | - Memory usage (threshold: 80%)
 83 | - Error rate (threshold: 5%)
 84 | - Recent errors (threshold: 5 per 5 minutes)
 85 | - Average response time (threshold: 5 seconds)
 86 | 
 87 | ## Logging System
 88 | 
 89 | ### Log Levels
 90 | 
 91 | - **DEBUG**: Detailed diagnostic information
 92 | - **INFO**: General operational messages
 93 | - **WARN**: Warning conditions
 94 | - **ERROR**: Error conditions requiring attention
 95 | 
 96 | ### Log Formats
 97 | 
 98 | #### Console Format (Development)
 99 | ```
100 | 2023-12-08T10:30:45.123Z INFO  [req-123] Request started: fetch_repository_data
101 | 2023-12-08T10:30:46.456Z INFO  [req-123] Request completed: fetch_repository_data (1333ms)
102 | ```
103 | 
104 | #### JSON Format (Production)
105 | ```json
106 | {
107 |   "timestamp": "2023-12-08T10:30:45.123Z",
108 |   "level": "INFO",
109 |   "message": "Request started: fetch_repository_data",
110 |   "context": {
111 |     "tool": "fetch_repository_data",
112 |     "requestId": "req-123"
113 |   },
114 |   "requestId": "req-123"
115 | }
116 | ```
117 | 
118 | ### Configuration
119 | 
120 | Set log level via environment variable:
121 | ```bash
122 | export LOG_LEVEL=debug  # debug, info, warn, error
123 | export NODE_ENV=production  # Enables JSON logging
124 | ```
125 | 
126 | ## Monitoring Dashboard
127 | 
128 | The interactive dashboard provides real-time visibility into:
129 | 
130 | ### System Overview
131 | - Uptime and memory usage
132 | - Request statistics and error rates
133 | - Response time percentiles
134 | 
135 | ### Tool Performance
136 | - Usage statistics per tool
137 | - Average response times
138 | - Error rates by tool
139 | 
140 | ### Recent Activity
141 | - Last 10 requests with status
142 | - Recent log entries
143 | - Error details
144 | 
145 | ### Performance Insights
146 | - Slowest tools analysis
147 | - Error-prone operations
148 | - Peak usage patterns
149 | - Automated recommendations
150 | 
151 | ## Using the Monitoring API
152 | 
153 | ### Programmatic Access
154 | 
155 | ```javascript
156 | import { monitoring } from './src/utils/monitoring.js';
157 | 
158 | // Get current metrics
159 | const metrics = monitoring.getMetrics();
160 | 
161 | // Get health status
162 | const health = monitoring.getHealthStatus();
163 | 
164 | // Get performance insights
165 | const insights = monitoring.getPerformanceInsights();
166 | 
167 | // Export all data
168 | const exportData = monitoring.exportMetrics();
169 | ```
170 | 
171 | ### Request Tracking
172 | 
173 | ```javascript
174 | // Manual request tracking
175 | const requestId = monitoring.generateRequestId();
176 | const startTime = Date.now();
177 | 
178 | monitoring.startRequest('my_tool', requestId);
179 | 
180 | try {
181 |   // Your tool logic here
182 |   const result = await myTool();
183 |   monitoring.completeRequest('my_tool', startTime, true, undefined, requestId);
184 |   return result;
185 | } catch (error) {
186 |   monitoring.completeRequest('my_tool', startTime, false, error.message, requestId);
187 |   throw error;
188 | }
189 | ```
190 | 
191 | ### Tool Monitoring Wrapper
192 | 
193 | ```javascript
194 | import { monitorTool } from './src/utils/monitoring.js';
195 | 
196 | // Wrap any function with automatic monitoring
197 | const monitoredFunction = monitorTool('my_tool', async (param) => {
198 |   // Your tool logic
199 |   return result;
200 | });
201 | ```
202 | 
203 | ## Performance Optimization
204 | 
205 | ### Monitoring Overhead
206 | 
207 | The monitoring system is designed for minimal overhead:
208 | - Metrics collection: ~0.1ms per request
209 | - Memory usage: ~1MB for 1000 requests
210 | - CPU impact: <1% under normal load
211 | 
212 | ### Buffer Management
213 | 
214 | - Request metrics: Limited to 1000 recent entries
215 | - Log buffer: Limited to 1000 recent entries
216 | - Automatic cleanup prevents memory leaks
217 | 
218 | ## Docker Integration
219 | 
220 | Monitoring works seamlessly with Docker:
221 | 
222 | ```bash
223 | # View logs from container
224 | ./scripts/docker-logs.sh -f --timestamps
225 | 
226 | # Monitor container health
227 | docker exec codecompass-mcp node scripts/monitor.js
228 | 
229 | # Export metrics from container
230 | docker exec codecompass-mcp node scripts/monitor.js --export
231 | ```
232 | 
233 | ## Production Deployment
234 | 
235 | ### Environment Variables
236 | 
237 | ```bash
238 | # Enable JSON logging
239 | NODE_ENV=production
240 | 
241 | # Set log level
242 | LOG_LEVEL=info
243 | 
244 | # Optional: Enable file logging
245 | LOG_FILE=/var/log/codecompass-mcp.log
246 | ```
247 | 
248 | ### External Monitoring
249 | 
250 | The monitoring system integrates with external systems:
251 | 
252 | ```bash
253 | # Prometheus metrics endpoint (if implemented)
254 | curl http://localhost:3000/metrics
255 | 
256 | # Health check endpoint
257 | curl http://localhost:3000/health
258 | 
259 | # JSON metrics export
260 | curl http://localhost:3000/metrics.json
261 | ```
262 | 
263 | ## Troubleshooting
264 | 
265 | ### Common Issues
266 | 
267 | 1. **High Memory Usage**
268 |    - Check metrics buffer size
269 |    - Review tool usage patterns
270 |    - Consider request rate limiting
271 | 
272 | 2. **Slow Response Times**
273 |    - Analyze slowest tools
274 |    - Implement caching where appropriate
275 |    - Use chunking for large responses
276 | 
277 | 3. **High Error Rates**
278 |    - Review error logs
279 |    - Check API rate limits
280 |    - Verify configuration
281 | 
282 | ### Debug Mode
283 | 
284 | Enable debug logging for detailed troubleshooting:
285 | 
286 | ```bash
287 | export LOG_LEVEL=debug
288 | npm run dev
289 | ```
290 | 
291 | ## Best Practices
292 | 
293 | ### 1. Regular Monitoring
294 | 
295 | - Check dashboard during development
296 | - Monitor health checks in production
297 | - Set up alerts for critical thresholds
298 | 
299 | ### 2. Performance Analysis
300 | 
301 | - Review weekly performance reports
302 | - Identify trending issues
303 | - Optimize based on insights
304 | 
305 | ### 3. Log Management
306 | 
307 | - Rotate log files in production
308 | - Use structured logging for analysis
309 | - Set appropriate log levels
310 | 
311 | ### 4. Capacity Planning
312 | 
313 | - Monitor resource usage trends
314 | - Plan for peak usage periods
315 | - Scale based on metrics
316 | 
317 | ## Integration Examples
318 | 
319 | ### CI/CD Health Checks
320 | 
321 | ```yaml
322 | # GitHub Actions example
323 | - name: Health Check
324 |   run: |
325 |     npm run monitor -- --export > metrics.json
326 |     # Parse and validate metrics
327 |     node scripts/validate-health.js
328 | ```
329 | 
330 | ### Load Testing
331 | 
332 | ```bash
333 | # Monitor during load testing
334 | npm run monitor -- --watch &
335 | # Run load tests
336 | npm run load-test
337 | ```
338 | 
339 | ### Custom Dashboards
340 | 
341 | The monitoring system can integrate with:
342 | - Grafana for visualization
343 | - Prometheus for metrics collection
344 | - ELK stack for log analysis
345 | - New Relic for APM
346 | 
347 | ## API Reference
348 | 
349 | ### Health Check Tool
350 | 
351 | ```json
352 | {
353 |   "name": "health_check",
354 |   "arguments": {
355 |     "checks": ["api-limits", "system-health", "monitoring", "configuration"],
356 |     "options": {
357 |       "include_metrics": true,
358 |       "include_insights": true,
359 |       "include_logs": true
360 |     }
361 |   }
362 | }
363 | ```
364 | 
365 | ### Monitoring Scripts
366 | 
367 | ```bash
368 | # Basic monitoring
369 | node scripts/monitor.js
370 | 
371 | # Watch mode
372 | node scripts/monitor.js --watch
373 | 
374 | # Export mode
375 | node scripts/monitor.js --export
376 | 
377 | # Reset metrics
378 | node scripts/monitor.js --reset
379 | ```
380 | 
381 | ## Support
382 | 
383 | For monitoring-related issues:
384 | 1. Check the debug logs
385 | 2. Review the performance insights
386 | 3. Consult the troubleshooting guide
387 | 4. Report issues with metrics export
388 | 
389 | The monitoring system is designed to be self-diagnosing and provides actionable insights for performance optimization and issue resolution.
```

--------------------------------------------------------------------------------
/src/utils/logger.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { getConfig } from './config.js';
  2 | 
  3 | // Log levels
  4 | export enum LogLevel {
  5 |   DEBUG = 0,
  6 |   INFO = 1,
  7 |   WARN = 2,
  8 |   ERROR = 3,
  9 | }
 10 | 
 11 | // Log entry interface
 12 | export interface LogEntry {
 13 |   timestamp: string;
 14 |   level: LogLevel;
 15 |   message: string;
 16 |   context?: Record<string, any>;
 17 |   error?: Error;
 18 |   duration?: number;
 19 |   requestId?: string;
 20 | }
 21 | 
 22 | // Logger configuration
 23 | interface LoggerConfig {
 24 |   level: LogLevel;
 25 |   enableTimestamps: boolean;
 26 |   enableColors: boolean;
 27 |   enableJson: boolean;
 28 |   enableFile: boolean;
 29 |   logFile?: string;
 30 | }
 31 | 
 32 | // Color codes for console output
 33 | const COLORS = {
 34 |   reset: '\x1b[0m',
 35 |   bright: '\x1b[1m',
 36 |   dim: '\x1b[2m',
 37 |   red: '\x1b[31m',
 38 |   green: '\x1b[32m',
 39 |   yellow: '\x1b[33m',
 40 |   blue: '\x1b[34m',
 41 |   magenta: '\x1b[35m',
 42 |   cyan: '\x1b[36m',
 43 |   white: '\x1b[37m',
 44 |   gray: '\x1b[90m',
 45 | };
 46 | 
 47 | // Log level colors
 48 | const LEVEL_COLORS = {
 49 |   [LogLevel.DEBUG]: COLORS.gray,
 50 |   [LogLevel.INFO]: COLORS.blue,
 51 |   [LogLevel.WARN]: COLORS.yellow,
 52 |   [LogLevel.ERROR]: COLORS.red,
 53 | };
 54 | 
 55 | // Log level names
 56 | const LEVEL_NAMES = {
 57 |   [LogLevel.DEBUG]: 'DEBUG',
 58 |   [LogLevel.INFO]: 'INFO',
 59 |   [LogLevel.WARN]: 'WARN',
 60 |   [LogLevel.ERROR]: 'ERROR',
 61 | };
 62 | 
 63 | class Logger {
 64 |   private config: LoggerConfig;
 65 |   private logBuffer: LogEntry[] = [];
 66 |   private requestCounter = 0;
 67 | 
 68 |   constructor() {
 69 |     const appConfig = getConfig();
 70 |     this.config = {
 71 |       level: this.parseLogLevel(appConfig.logging.level),
 72 |       enableTimestamps: appConfig.logging.enableTimestamps,
 73 |       enableColors: appConfig.logging.enableColors,
 74 |       enableJson: process.env.NODE_ENV === 'production',
 75 |       enableFile: process.env.LOG_FILE !== undefined,
 76 |       logFile: process.env.LOG_FILE,
 77 |     };
 78 |   }
 79 | 
 80 |   private parseLogLevel(level: string): LogLevel {
 81 |     switch (level.toLowerCase()) {
 82 |       case 'debug': return LogLevel.DEBUG;
 83 |       case 'info': return LogLevel.INFO;
 84 |       case 'warn': return LogLevel.WARN;
 85 |       case 'error': return LogLevel.ERROR;
 86 |       default: return LogLevel.INFO;
 87 |     }
 88 |   }
 89 | 
 90 |   private shouldLog(level: LogLevel): boolean {
 91 |     return level >= this.config.level;
 92 |   }
 93 | 
 94 |   private formatTimestamp(): string {
 95 |     return new Date().toISOString();
 96 |   }
 97 | 
 98 |   private formatConsoleMessage(entry: LogEntry): string {
 99 |     let message = '';
100 |     
101 |     if (this.config.enableColors) {
102 |       const color = LEVEL_COLORS[entry.level];
103 |       const levelName = LEVEL_NAMES[entry.level].padEnd(5);
104 |       
105 |       if (this.config.enableTimestamps) {
106 |         message += `${COLORS.gray}${entry.timestamp}${COLORS.reset} `;
107 |       }
108 |       
109 |       message += `${color}${levelName}${COLORS.reset} `;
110 |       
111 |       if (entry.requestId) {
112 |         message += `${COLORS.cyan}[${entry.requestId}]${COLORS.reset} `;
113 |       }
114 |       
115 |       message += entry.message;
116 |       
117 |       if (entry.duration !== undefined) {
118 |         message += ` ${COLORS.gray}(${entry.duration}ms)${COLORS.reset}`;
119 |       }
120 |       
121 |       if (entry.context && Object.keys(entry.context).length > 0) {
122 |         message += `\n${COLORS.dim}${JSON.stringify(entry.context, null, 2)}${COLORS.reset}`;
123 |       }
124 |       
125 |       if (entry.error) {
126 |         message += `\n${COLORS.red}${entry.error.stack || entry.error.message}${COLORS.reset}`;
127 |       }
128 |     } else {
129 |       const levelName = LEVEL_NAMES[entry.level].padEnd(5);
130 |       
131 |       if (this.config.enableTimestamps) {
132 |         message += `${entry.timestamp} `;
133 |       }
134 |       
135 |       message += `${levelName} `;
136 |       
137 |       if (entry.requestId) {
138 |         message += `[${entry.requestId}] `;
139 |       }
140 |       
141 |       message += entry.message;
142 |       
143 |       if (entry.duration !== undefined) {
144 |         message += ` (${entry.duration}ms)`;
145 |       }
146 |       
147 |       if (entry.context && Object.keys(entry.context).length > 0) {
148 |         message += `\n${JSON.stringify(entry.context, null, 2)}`;
149 |       }
150 |       
151 |       if (entry.error) {
152 |         message += `\n${entry.error.stack || entry.error.message}`;
153 |       }
154 |     }
155 |     
156 |     return message;
157 |   }
158 | 
159 |   private formatJsonMessage(entry: LogEntry): string {
160 |     return JSON.stringify({
161 |       timestamp: entry.timestamp,
162 |       level: LEVEL_NAMES[entry.level],
163 |       message: entry.message,
164 |       context: entry.context,
165 |       error: entry.error ? {
166 |         message: entry.error.message,
167 |         stack: entry.error.stack,
168 |         name: entry.error.name,
169 |       } : undefined,
170 |       duration: entry.duration,
171 |       requestId: entry.requestId,
172 |     });
173 |   }
174 | 
175 |   private writeLog(entry: LogEntry): void {
176 |     if (!this.shouldLog(entry.level)) {
177 |       return;
178 |     }
179 | 
180 |     // Add to buffer for monitoring
181 |     this.logBuffer.push(entry);
182 |     if (this.logBuffer.length > 1000) {
183 |       this.logBuffer.shift();
184 |     }
185 | 
186 |     // Console output
187 |     if (this.config.enableJson) {
188 |       console.log(this.formatJsonMessage(entry));
189 |     } else {
190 |       console.log(this.formatConsoleMessage(entry));
191 |     }
192 | 
193 |     // File output (if enabled)
194 |     if (this.config.enableFile && this.config.logFile) {
195 |       // In a real implementation, you'd write to file here
196 |       // For now, we'll just use console
197 |     }
198 |   }
199 | 
200 |   public generateRequestId(): string {
201 |     return `req-${Date.now()}-${++this.requestCounter}`;
202 |   }
203 | 
204 |   public debug(message: string, context?: Record<string, any>, requestId?: string): void {
205 |     this.writeLog({
206 |       timestamp: this.formatTimestamp(),
207 |       level: LogLevel.DEBUG,
208 |       message,
209 |       context,
210 |       requestId,
211 |     });
212 |   }
213 | 
214 |   public info(message: string, context?: Record<string, any>, requestId?: string): void {
215 |     this.writeLog({
216 |       timestamp: this.formatTimestamp(),
217 |       level: LogLevel.INFO,
218 |       message,
219 |       context,
220 |       requestId,
221 |     });
222 |   }
223 | 
224 |   public warn(message: string, context?: Record<string, any>, requestId?: string): void {
225 |     this.writeLog({
226 |       timestamp: this.formatTimestamp(),
227 |       level: LogLevel.WARN,
228 |       message,
229 |       context,
230 |       requestId,
231 |     });
232 |   }
233 | 
234 |   public error(message: string, error?: Error, context?: Record<string, any>, requestId?: string): void {
235 |     this.writeLog({
236 |       timestamp: this.formatTimestamp(),
237 |       level: LogLevel.ERROR,
238 |       message,
239 |       error,
240 |       context,
241 |       requestId,
242 |     });
243 |   }
244 | 
245 |   public timing(message: string, startTime: number, context?: Record<string, any>, requestId?: string): void {
246 |     const duration = Date.now() - startTime;
247 |     this.writeLog({
248 |       timestamp: this.formatTimestamp(),
249 |       level: LogLevel.INFO,
250 |       message,
251 |       context,
252 |       duration,
253 |       requestId,
254 |     });
255 |   }
256 | 
257 |   public getLogBuffer(): LogEntry[] {
258 |     return [...this.logBuffer];
259 |   }
260 | 
261 |   public getStats(): {
262 |     totalLogs: number;
263 |     errorCount: number;
264 |     warnCount: number;
265 |     averageResponseTime: number;
266 |   } {
267 |     const totalLogs = this.logBuffer.length;
268 |     const errorCount = this.logBuffer.filter(entry => entry.level === LogLevel.ERROR).length;
269 |     const warnCount = this.logBuffer.filter(entry => entry.level === LogLevel.WARN).length;
270 |     
271 |     const timingEntries = this.logBuffer.filter(entry => entry.duration !== undefined);
272 |     const averageResponseTime = timingEntries.length > 0 
273 |       ? timingEntries.reduce((sum, entry) => sum + (entry.duration || 0), 0) / timingEntries.length 
274 |       : 0;
275 | 
276 |     return {
277 |       totalLogs,
278 |       errorCount,
279 |       warnCount,
280 |       averageResponseTime,
281 |     };
282 |   }
283 | }
284 | 
285 | // Global logger instance
286 | const logger = new Logger();
287 | 
288 | // Helper functions for structured logging
289 | export const log = {
290 |   debug: (message: string, context?: Record<string, any>, requestId?: string) => 
291 |     logger.debug(message, context, requestId),
292 |   
293 |   info: (message: string, context?: Record<string, any>, requestId?: string) => 
294 |     logger.info(message, context, requestId),
295 |   
296 |   warn: (message: string, context?: Record<string, any>, requestId?: string) => 
297 |     logger.warn(message, context, requestId),
298 |   
299 |   error: (message: string, error?: Error, context?: Record<string, any>, requestId?: string) => 
300 |     logger.error(message, error, context, requestId),
301 |   
302 |   timing: (message: string, startTime: number, context?: Record<string, any>, requestId?: string) => 
303 |     logger.timing(message, startTime, context, requestId),
304 |   
305 |   generateRequestId: () => logger.generateRequestId(),
306 |   
307 |   getStats: () => logger.getStats(),
308 |   
309 |   getLogBuffer: () => logger.getLogBuffer(),
310 | };
311 | 
312 | // Performance monitoring helpers
313 | export function createPerformanceTimer(name: string, requestId?: string) {
314 |   const startTime = Date.now();
315 |   
316 |   return {
317 |     end: (context?: Record<string, any>) => {
318 |       log.timing(`${name} completed`, startTime, context, requestId);
319 |     },
320 |     
321 |     checkpoint: (checkpointName: string, context?: Record<string, any>) => {
322 |       log.timing(`${name} - ${checkpointName}`, startTime, context, requestId);
323 |     },
324 |   };
325 | }
326 | 
327 | // Export the logger instance
328 | export { logger };
329 | export default log;
```

--------------------------------------------------------------------------------
/docs/legacy-tools/transform.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { Tool } from '@modelcontextprotocol/sdk/types.js';
  2 | 
  3 | export const transformTools: Tool[] = [
  4 |   {
  5 |     name: 'convert_framework',
  6 |     description: 'Convert code between different frameworks (e.g., React to Vue, Express to Fastify)',
  7 |     inputSchema: {
  8 |       type: 'object',
  9 |       properties: {
 10 |         code: {
 11 |           type: 'string',
 12 |           description: 'Source code to convert',
 13 |         },
 14 |         sourceFramework: {
 15 |           type: 'string',
 16 |           description: 'Source framework (e.g., "react", "vue", "angular", "express")',
 17 |         },
 18 |         targetFramework: {
 19 |           type: 'string',
 20 |           description: 'Target framework',
 21 |         },
 22 |         conversionOptions: {
 23 |           type: 'object',
 24 |           properties: {
 25 |             preserveStructure: {
 26 |               type: 'boolean',
 27 |               description: 'Preserve original code structure as much as possible',
 28 |               default: true,
 29 |             },
 30 |             includeComments: {
 31 |               type: 'boolean',
 32 |               description: 'Include explanatory comments in converted code',
 33 |               default: true,
 34 |             },
 35 |             convertStyles: {
 36 |               type: 'boolean',
 37 |               description: 'Convert styling approach if applicable',
 38 |               default: true,
 39 |             },
 40 |             convertTests: {
 41 |               type: 'boolean',
 42 |               description: 'Convert test files if present',
 43 |               default: true,
 44 |             },
 45 |           },
 46 |         },
 47 |       },
 48 |       required: ['code', 'sourceFramework', 'targetFramework'],
 49 |     },
 50 |   },
 51 |   {
 52 |     name: 'update_api_patterns',
 53 |     description: 'Update API patterns and endpoints to modern conventions',
 54 |     inputSchema: {
 55 |       type: 'object',
 56 |       properties: {
 57 |         code: {
 58 |           type: 'string',
 59 |           description: 'Source code containing API patterns',
 60 |         },
 61 |         currentPattern: {
 62 |           type: 'string',
 63 |           enum: ['rest', 'graphql', 'rpc', 'websocket'],
 64 |           description: 'Current API pattern',
 65 |         },
 66 |         targetPattern: {
 67 |           type: 'string',
 68 |           enum: ['rest', 'graphql', 'rpc', 'websocket'],
 69 |           description: 'Target API pattern',
 70 |         },
 71 |         updateOptions: {
 72 |           type: 'object',
 73 |           properties: {
 74 |             addValidation: {
 75 |               type: 'boolean',
 76 |               description: 'Add input validation',
 77 |               default: true,
 78 |             },
 79 |             addErrorHandling: {
 80 |               type: 'boolean',
 81 |               description: 'Add comprehensive error handling',
 82 |               default: true,
 83 |             },
 84 |             addDocumentation: {
 85 |               type: 'boolean',
 86 |               description: 'Add API documentation',
 87 |               default: true,
 88 |             },
 89 |             addSecurity: {
 90 |               type: 'boolean',
 91 |               description: 'Add security middleware',
 92 |               default: true,
 93 |             },
 94 |           },
 95 |         },
 96 |       },
 97 |       required: ['code', 'currentPattern', 'targetPattern'],
 98 |     },
 99 |   },
100 |   {
101 |     name: 'extract_business_logic',
102 |     description: 'Extract business logic from framework-specific code',
103 |     inputSchema: {
104 |       type: 'object',
105 |       properties: {
106 |         code: {
107 |           type: 'string',
108 |           description: 'Source code containing business logic',
109 |         },
110 |         framework: {
111 |           type: 'string',
112 |           description: 'Framework to extract from',
113 |         },
114 |         extractionOptions: {
115 |           type: 'object',
116 |           properties: {
117 |             createInterfaces: {
118 |               type: 'boolean',
119 |               description: 'Create interfaces for extracted logic',
120 |               default: true,
121 |             },
122 |             addTypes: {
123 |               type: 'boolean',
124 |               description: 'Add TypeScript types',
125 |               default: true,
126 |             },
127 |             createTests: {
128 |               type: 'boolean',
129 |               description: 'Create unit tests for extracted logic',
130 |               default: false,
131 |             },
132 |             separateUtilities: {
133 |               type: 'boolean',
134 |               description: 'Separate utility functions',
135 |               default: true,
136 |             },
137 |           },
138 |         },
139 |       },
140 |       required: ['code', 'framework'],
141 |     },
142 |   },
143 |   {
144 |     name: 'migrate_database_layer',
145 |     description: 'Migrate database layer between different ORMs or query builders',
146 |     inputSchema: {
147 |       type: 'object',
148 |       properties: {
149 |         code: {
150 |           type: 'string',
151 |           description: 'Database layer code to migrate',
152 |         },
153 |         sourceORM: {
154 |           type: 'string',
155 |           description: 'Source ORM (e.g., "sequelize", "typeorm", "prisma")',
156 |         },
157 |         targetORM: {
158 |           type: 'string',
159 |           description: 'Target ORM',
160 |         },
161 |         migrationOptions: {
162 |           type: 'object',
163 |           properties: {
164 |             preserveRelations: {
165 |               type: 'boolean',
166 |               description: 'Preserve database relations',
167 |               default: true,
168 |             },
169 |             convertValidation: {
170 |               type: 'boolean',
171 |               description: 'Convert validation rules',
172 |               default: true,
173 |             },
174 |             generateMigrations: {
175 |               type: 'boolean',
176 |               description: 'Generate migration files',
177 |               default: true,
178 |             },
179 |             convertSeeds: {
180 |               type: 'boolean',
181 |               description: 'Convert seed files',
182 |               default: true,
183 |             },
184 |           },
185 |         },
186 |       },
187 |       required: ['code', 'sourceORM', 'targetORM'],
188 |     },
189 |   },
190 |   {
191 |     name: 'update_build_system',
192 |     description: 'Update build system configuration (webpack, vite, rollup, etc.)',
193 |     inputSchema: {
194 |       type: 'object',
195 |       properties: {
196 |         configCode: {
197 |           type: 'string',
198 |           description: 'Build system configuration code',
199 |         },
200 |         sourceTool: {
201 |           type: 'string',
202 |           description: 'Source build tool (e.g., "webpack", "vite", "rollup")',
203 |         },
204 |         targetTool: {
205 |           type: 'string',
206 |           description: 'Target build tool',
207 |         },
208 |         projectType: {
209 |           type: 'string',
210 |           enum: ['library', 'application', 'monorepo'],
211 |           description: 'Type of project',
212 |         },
213 |         features: {
214 |           type: 'array',
215 |           items: { type: 'string' },
216 |           description: 'Features to preserve/add (e.g., ["typescript", "hot-reload", "tree-shaking"])',
217 |         },
218 |       },
219 |       required: ['configCode', 'sourceTool', 'targetTool'],
220 |     },
221 |   },
222 |   {
223 |     name: 'convert_testing_framework',
224 |     description: 'Convert tests between different testing frameworks',
225 |     inputSchema: {
226 |       type: 'object',
227 |       properties: {
228 |         testCode: {
229 |           type: 'string',
230 |           description: 'Test code to convert',
231 |         },
232 |         sourceFramework: {
233 |           type: 'string',
234 |           description: 'Source testing framework (e.g., "jest", "mocha", "vitest")',
235 |         },
236 |         targetFramework: {
237 |           type: 'string',
238 |           description: 'Target testing framework',
239 |         },
240 |         conversionOptions: {
241 |           type: 'object',
242 |           properties: {
243 |             preserveStructure: {
244 |               type: 'boolean',
245 |               description: 'Preserve test structure',
246 |               default: true,
247 |             },
248 |             convertMocks: {
249 |               type: 'boolean',
250 |               description: 'Convert mocking syntax',
251 |               default: true,
252 |             },
253 |             convertAssertions: {
254 |               type: 'boolean',
255 |               description: 'Convert assertion syntax',
256 |               default: true,
257 |             },
258 |             addSetupTeardown: {
259 |               type: 'boolean',
260 |               description: 'Add setup/teardown hooks',
261 |               default: true,
262 |             },
263 |           },
264 |         },
265 |       },
266 |       required: ['testCode', 'sourceFramework', 'targetFramework'],
267 |     },
268 |   },
269 |   {
270 |     name: 'modernize_syntax',
271 |     description: 'Modernize language syntax to use latest features',
272 |     inputSchema: {
273 |       type: 'object',
274 |       properties: {
275 |         code: {
276 |           type: 'string',
277 |           description: 'Source code to modernize',
278 |         },
279 |         language: {
280 |           type: 'string',
281 |           description: 'Programming language',
282 |         },
283 |         sourceVersion: {
284 |           type: 'string',
285 |           description: 'Source language version',
286 |         },
287 |         targetVersion: {
288 |           type: 'string',
289 |           description: 'Target language version',
290 |         },
291 |         transformations: {
292 |           type: 'array',
293 |           items: { type: 'string' },
294 |           description: 'Specific transformations to apply',
295 |         },
296 |         preserveCompatibility: {
297 |           type: 'boolean',
298 |           description: 'Preserve backward compatibility where possible',
299 |           default: false,
300 |         },
301 |       },
302 |       required: ['code', 'language', 'targetVersion'],
303 |     },
304 |   },
305 | ];
```

--------------------------------------------------------------------------------
/docs/legacy-tools/refactor.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { Tool } from '@modelcontextprotocol/sdk/types.js';
  2 | 
  3 | export const refactorTools: Tool[] = [
  4 |   {
  5 |     name: 'refactor_for_project',
  6 |     description: 'Refactor code from a repository to fit a specific target project structure and conventions',
  7 |     inputSchema: {
  8 |       type: 'object',
  9 |       properties: {
 10 |         url: {
 11 |           type: 'string',
 12 |           description: 'GitHub repository URL',
 13 |         },
 14 |         targetProject: {
 15 |           type: 'object',
 16 |           properties: {
 17 |             framework: {
 18 |               type: 'string',
 19 |               description: 'Target framework (e.g., "react", "vue", "angular")',
 20 |             },
 21 |             language: {
 22 |               type: 'string',
 23 |               description: 'Target language (e.g., "typescript", "javascript")',
 24 |             },
 25 |             structure: {
 26 |               type: 'object',
 27 |               description: 'Target project structure and conventions',
 28 |             },
 29 |           },
 30 |           required: ['framework'],
 31 |         },
 32 |         refactorOptions: {
 33 |           type: 'object',
 34 |           properties: {
 35 |             namingConvention: {
 36 |               type: 'string',
 37 |               enum: ['camelCase', 'snake_case', 'kebab-case', 'PascalCase'],
 38 |               description: 'Naming convention to apply',
 39 |             },
 40 |             modernizationLevel: {
 41 |               type: 'string',
 42 |               enum: ['minimal', 'moderate', 'aggressive'],
 43 |               description: 'Level of modernization to apply',
 44 |               default: 'moderate',
 45 |             },
 46 |             removeProjectSpecific: {
 47 |               type: 'boolean',
 48 |               description: 'Remove project-specific code and dependencies',
 49 |               default: true,
 50 |             },
 51 |             extractComponents: {
 52 |               type: 'boolean',
 53 |               description: 'Extract reusable components',
 54 |               default: true,
 55 |             },
 56 |             addTypeScript: {
 57 |               type: 'boolean',
 58 |               description: 'Convert to TypeScript if applicable',
 59 |               default: false,
 60 |             },
 61 |           },
 62 |         },
 63 |         filesToRefactor: {
 64 |           type: 'array',
 65 |           items: { type: 'string' },
 66 |           description: 'Specific files to refactor (optional - refactors all if not specified)',
 67 |         },
 68 |       },
 69 |       required: ['url', 'targetProject'],
 70 |     },
 71 |   },
 72 |   {
 73 |     name: 'extract_reusable_components',
 74 |     description: 'Identify and extract reusable components from a repository',
 75 |     inputSchema: {
 76 |       type: 'object',
 77 |       properties: {
 78 |         url: {
 79 |           type: 'string',
 80 |           description: 'GitHub repository URL',
 81 |         },
 82 |         componentTypes: {
 83 |           type: 'array',
 84 |           items: { 
 85 |             type: 'string',
 86 |             enum: ['ui-components', 'hooks', 'utilities', 'services', 'models', 'types'],
 87 |           },
 88 |           description: 'Types of components to extract',
 89 |         },
 90 |         minReusabilityScore: {
 91 |           type: 'number',
 92 |           description: 'Minimum reusability score (0-100)',
 93 |           default: 60,
 94 |         },
 95 |         includeDependencies: {
 96 |           type: 'boolean',
 97 |           description: 'Include component dependencies',
 98 |           default: true,
 99 |         },
100 |       },
101 |       required: ['url'],
102 |     },
103 |   },
104 |   {
105 |     name: 'adapt_dependencies',
106 |     description: 'Adapt import paths and dependencies to match target project structure',
107 |     inputSchema: {
108 |       type: 'object',
109 |       properties: {
110 |         code: {
111 |           type: 'string',
112 |           description: 'Source code to adapt',
113 |         },
114 |         dependencyMappings: {
115 |           type: 'object',
116 |           description: 'Mapping of old dependencies to new ones',
117 |         },
118 |         targetStructure: {
119 |           type: 'object',
120 |           properties: {
121 |             srcPath: {
122 |               type: 'string',
123 |               description: 'Path to source directory',
124 |             },
125 |             aliasMapping: {
126 |               type: 'object',
127 |               description: 'Path alias mappings',
128 |             },
129 |           },
130 |         },
131 |         language: {
132 |           type: 'string',
133 |           description: 'Programming language',
134 |         },
135 |       },
136 |       required: ['code'],
137 |     },
138 |   },
139 |   {
140 |     name: 'transform_naming_conventions',
141 |     description: 'Transform code to use different naming conventions',
142 |     inputSchema: {
143 |       type: 'object',
144 |       properties: {
145 |         code: {
146 |           type: 'string',
147 |           description: 'Source code to transform',
148 |         },
149 |         fromConvention: {
150 |           type: 'string',
151 |           enum: ['camelCase', 'snake_case', 'kebab-case', 'PascalCase'],
152 |           description: 'Source naming convention',
153 |         },
154 |         toConvention: {
155 |           type: 'string',
156 |           enum: ['camelCase', 'snake_case', 'kebab-case', 'PascalCase'],
157 |           description: 'Target naming convention',
158 |         },
159 |         scope: {
160 |           type: 'array',
161 |           items: { 
162 |             type: 'string',
163 |             enum: ['variables', 'functions', 'classes', 'files', 'folders'],
164 |           },
165 |           description: 'Scope of transformation',
166 |           default: ['variables', 'functions'],
167 |         },
168 |         preserveConstants: {
169 |           type: 'boolean',
170 |           description: 'Preserve constant naming (UPPER_CASE)',
171 |           default: true,
172 |         },
173 |       },
174 |       required: ['code', 'fromConvention', 'toConvention'],
175 |     },
176 |   },
177 |   {
178 |     name: 'modernize_code',
179 |     description: 'Modernize code to use latest language features and patterns',
180 |     inputSchema: {
181 |       type: 'object',
182 |       properties: {
183 |         code: {
184 |           type: 'string',
185 |           description: 'Source code to modernize',
186 |         },
187 |         language: {
188 |           type: 'string',
189 |           description: 'Programming language',
190 |         },
191 |         targetVersion: {
192 |           type: 'string',
193 |           description: 'Target language version (e.g., "ES2022", "Python 3.10")',
194 |         },
195 |         transformations: {
196 |           type: 'array',
197 |           items: { type: 'string' },
198 |           description: 'Specific transformations to apply',
199 |         },
200 |         preserveCompatibility: {
201 |           type: 'boolean',
202 |           description: 'Preserve backward compatibility',
203 |           default: false,
204 |         },
205 |       },
206 |       required: ['code', 'language'],
207 |     },
208 |   },
209 |   {
210 |     name: 'remove_project_coupling',
211 |     description: 'Remove project-specific coupling and make code more generic',
212 |     inputSchema: {
213 |       type: 'object',
214 |       properties: {
215 |         code: {
216 |           type: 'string',
217 |           description: 'Source code to decouple',
218 |         },
219 |         language: {
220 |           type: 'string',
221 |           description: 'Programming language',
222 |         },
223 |         couplingTypes: {
224 |           type: 'array',
225 |           items: { 
226 |             type: 'string',
227 |             enum: ['hard-coded-values', 'specific-apis', 'tight-dependencies', 'environment-specific'],
228 |           },
229 |           description: 'Types of coupling to remove',
230 |         },
231 |         replacementStrategy: {
232 |           type: 'string',
233 |           enum: ['parameters', 'config', 'interfaces', 'injection'],
234 |           description: 'Strategy for replacing coupled code',
235 |           default: 'parameters',
236 |         },
237 |       },
238 |       required: ['code', 'language'],
239 |     },
240 |   },
241 |   {
242 |     name: 'optimize_performance',
243 |     description: 'Apply performance optimizations to code',
244 |     inputSchema: {
245 |       type: 'object',
246 |       properties: {
247 |         code: {
248 |           type: 'string',
249 |           description: 'Source code to optimize',
250 |         },
251 |         language: {
252 |           type: 'string',
253 |           description: 'Programming language',
254 |         },
255 |         optimizationTypes: {
256 |           type: 'array',
257 |           items: { 
258 |             type: 'string',
259 |             enum: ['memory', 'cpu', 'io', 'network', 'rendering'],
260 |           },
261 |           description: 'Types of optimizations to apply',
262 |         },
263 |         targetEnvironment: {
264 |           type: 'string',
265 |           enum: ['browser', 'node', 'mobile', 'server'],
266 |           description: 'Target runtime environment',
267 |         },
268 |         preserveReadability: {
269 |           type: 'boolean',
270 |           description: 'Preserve code readability',
271 |           default: true,
272 |         },
273 |       },
274 |       required: ['code', 'language'],
275 |     },
276 |   },
277 |   {
278 |     name: 'add_error_handling',
279 |     description: 'Add comprehensive error handling to code',
280 |     inputSchema: {
281 |       type: 'object',
282 |       properties: {
283 |         code: {
284 |           type: 'string',
285 |           description: 'Source code to enhance',
286 |         },
287 |         language: {
288 |           type: 'string',
289 |           description: 'Programming language',
290 |         },
291 |         errorHandlingStyle: {
292 |           type: 'string',
293 |           enum: ['try-catch', 'promises', 'result-type', 'exceptions'],
294 |           description: 'Error handling style to use',
295 |         },
296 |         includeLogs: {
297 |           type: 'boolean',
298 |           description: 'Include logging statements',
299 |           default: true,
300 |         },
301 |         includeValidation: {
302 |           type: 'boolean',
303 |           description: 'Include input validation',
304 |           default: true,
305 |         },
306 |       },
307 |       required: ['code', 'language'],
308 |     },
309 |   },
310 | ];
```
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