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# Directory Structure

```
├── .dockerignore
├── .eslintignore
├── .eslintrc.json
├── .github
│   ├── agents
│   │   ├── documcp-ast.md
│   │   ├── documcp-deploy.md
│   │   ├── documcp-memory.md
│   │   ├── documcp-test.md
│   │   └── documcp-tool.md
│   ├── copilot-instructions.md
│   ├── dependabot.yml
│   ├── ISSUE_TEMPLATE
│   │   ├── automated-changelog.md
│   │   ├── bug_report.md
│   │   ├── bug_report.yml
│   │   ├── documentation_issue.md
│   │   ├── feature_request.md
│   │   ├── feature_request.yml
│   │   ├── npm-publishing-fix.md
│   │   └── release_improvements.md
│   ├── PULL_REQUEST_TEMPLATE.md
│   ├── release-drafter.yml
│   └── workflows
│       ├── auto-merge.yml
│       ├── ci.yml
│       ├── codeql.yml
│       ├── dependency-review.yml
│       ├── deploy-docs.yml
│       ├── README.md
│       ├── release-drafter.yml
│       └── release.yml
├── .gitignore
├── .husky
│   ├── commit-msg
│   └── pre-commit
├── .linkcheck.config.json
├── .markdown-link-check.json
├── .nvmrc
├── .pre-commit-config.yaml
├── .versionrc.json
├── ARCHITECTURAL_CHANGES_SUMMARY.md
├── CHANGELOG.md
├── CODE_OF_CONDUCT.md
├── commitlint.config.js
├── CONTRIBUTING.md
├── docker-compose.docs.yml
├── Dockerfile.docs
├── docs
│   ├── .docusaurus
│   │   ├── docusaurus-plugin-content-docs
│   │   │   └── default
│   │   │       └── __mdx-loader-dependency.json
│   │   └── docusaurus-plugin-content-pages
│   │       └── default
│   │           └── __plugin.json
│   ├── adrs
│   │   ├── adr-0001-mcp-server-architecture.md
│   │   ├── adr-0002-repository-analysis-engine.md
│   │   ├── adr-0003-static-site-generator-recommendation-engine.md
│   │   ├── adr-0004-diataxis-framework-integration.md
│   │   ├── adr-0005-github-pages-deployment-automation.md
│   │   ├── adr-0006-mcp-tools-api-design.md
│   │   ├── adr-0007-mcp-prompts-and-resources-integration.md
│   │   ├── adr-0008-intelligent-content-population-engine.md
│   │   ├── adr-0009-content-accuracy-validation-framework.md
│   │   ├── adr-0010-mcp-resource-pattern-redesign.md
│   │   ├── adr-0011-ce-mcp-compatibility.md
│   │   ├── adr-0012-priority-scoring-system-for-documentation-drift.md
│   │   ├── adr-0013-release-pipeline-and-package-distribution.md
│   │   └── README.md
│   ├── api
│   │   ├── .nojekyll
│   │   ├── assets
│   │   │   ├── hierarchy.js
│   │   │   ├── highlight.css
│   │   │   ├── icons.js
│   │   │   ├── icons.svg
│   │   │   ├── main.js
│   │   │   ├── navigation.js
│   │   │   ├── search.js
│   │   │   └── style.css
│   │   ├── hierarchy.html
│   │   ├── index.html
│   │   ├── modules.html
│   │   └── variables
│   │       └── TOOLS.html
│   ├── assets
│   │   └── logo.svg
│   ├── CE-MCP-FINDINGS.md
│   ├── development
│   │   └── MCP_INSPECTOR_TESTING.md
│   ├── docusaurus.config.js
│   ├── explanation
│   │   ├── architecture.md
│   │   └── index.md
│   ├── guides
│   │   ├── link-validation.md
│   │   ├── playwright-integration.md
│   │   └── playwright-testing-workflow.md
│   ├── how-to
│   │   ├── analytics-setup.md
│   │   ├── change-watcher.md
│   │   ├── custom-domains.md
│   │   ├── documentation-freshness-tracking.md
│   │   ├── drift-priority-scoring.md
│   │   ├── github-pages-deployment.md
│   │   ├── index.md
│   │   ├── llm-integration.md
│   │   ├── local-testing.md
│   │   ├── performance-optimization.md
│   │   ├── prompting-guide.md
│   │   ├── repository-analysis.md
│   │   ├── seo-optimization.md
│   │   ├── site-monitoring.md
│   │   ├── troubleshooting.md
│   │   └── usage-examples.md
│   ├── index.md
│   ├── knowledge-graph.md
│   ├── package-lock.json
│   ├── package.json
│   ├── phase-2-intelligence.md
│   ├── reference
│   │   ├── api-overview.md
│   │   ├── cli.md
│   │   ├── configuration.md
│   │   ├── deploy-pages.md
│   │   ├── index.md
│   │   ├── mcp-tools.md
│   │   └── prompt-templates.md
│   ├── research
│   │   ├── cross-domain-integration
│   │   │   └── README.md
│   │   ├── domain-1-mcp-architecture
│   │   │   ├── index.md
│   │   │   └── mcp-performance-research.md
│   │   ├── domain-2-repository-analysis
│   │   │   └── README.md
│   │   ├── domain-3-ssg-recommendation
│   │   │   ├── index.md
│   │   │   └── ssg-performance-analysis.md
│   │   ├── domain-4-diataxis-integration
│   │   │   └── README.md
│   │   ├── domain-5-github-deployment
│   │   │   ├── github-pages-security-analysis.md
│   │   │   └── index.md
│   │   ├── domain-6-api-design
│   │   │   └── README.md
│   │   ├── README.md
│   │   ├── research-integration-summary-2025-01-14.md
│   │   ├── research-progress-template.md
│   │   └── research-questions-2025-01-14.md
│   ├── robots.txt
│   ├── sidebars.js
│   ├── sitemap.xml
│   ├── src
│   │   └── css
│   │       └── custom.css
│   └── tutorials
│       ├── development-setup.md
│       ├── environment-setup.md
│       ├── first-deployment.md
│       ├── getting-started.md
│       ├── index.md
│       ├── memory-workflows.md
│       └── user-onboarding.md
├── ISSUE_IMPLEMENTATION_SUMMARY.md
├── jest.config.js
├── LICENSE
├── Makefile
├── MCP_PHASE2_IMPLEMENTATION.md
├── mcp-config-example.json
├── mcp.json
├── package-lock.json
├── package.json
├── README.md
├── release.sh
├── scripts
│   └── check-package-structure.cjs
├── SECURITY.md
├── setup-precommit.sh
├── src
│   ├── benchmarks
│   │   └── performance.ts
│   ├── index.ts
│   ├── memory
│   │   ├── contextual-retrieval.ts
│   │   ├── deployment-analytics.ts
│   │   ├── enhanced-manager.ts
│   │   ├── export-import.ts
│   │   ├── freshness-kg-integration.ts
│   │   ├── index.ts
│   │   ├── integration.ts
│   │   ├── kg-code-integration.ts
│   │   ├── kg-health.ts
│   │   ├── kg-integration.ts
│   │   ├── kg-link-validator.ts
│   │   ├── kg-storage.ts
│   │   ├── knowledge-graph.ts
│   │   ├── learning.ts
│   │   ├── manager.ts
│   │   ├── multi-agent-sharing.ts
│   │   ├── pruning.ts
│   │   ├── schemas.ts
│   │   ├── storage.ts
│   │   ├── temporal-analysis.ts
│   │   ├── user-preferences.ts
│   │   └── visualization.ts
│   ├── prompts
│   │   └── technical-writer-prompts.ts
│   ├── scripts
│   │   └── benchmark.ts
│   ├── templates
│   │   └── playwright
│   │       ├── accessibility.spec.template.ts
│   │       ├── Dockerfile.template
│   │       ├── docs-e2e.workflow.template.yml
│   │       ├── link-validation.spec.template.ts
│   │       └── playwright.config.template.ts
│   ├── tools
│   │   ├── analyze-deployments.ts
│   │   ├── analyze-readme.ts
│   │   ├── analyze-repository.ts
│   │   ├── change-watcher.ts
│   │   ├── check-documentation-links.ts
│   │   ├── cleanup-agent-artifacts.ts
│   │   ├── deploy-pages.ts
│   │   ├── detect-gaps.ts
│   │   ├── evaluate-readme-health.ts
│   │   ├── generate-config.ts
│   │   ├── generate-contextual-content.ts
│   │   ├── generate-llm-context.ts
│   │   ├── generate-readme-template.ts
│   │   ├── generate-technical-writer-prompts.ts
│   │   ├── kg-health-check.ts
│   │   ├── manage-preferences.ts
│   │   ├── manage-sitemap.ts
│   │   ├── optimize-readme.ts
│   │   ├── populate-content.ts
│   │   ├── readme-best-practices.ts
│   │   ├── recommend-ssg.ts
│   │   ├── setup-playwright-tests.ts
│   │   ├── setup-structure.ts
│   │   ├── simulate-execution.ts
│   │   ├── sync-code-to-docs.ts
│   │   ├── test-local-deployment.ts
│   │   ├── track-documentation-freshness.ts
│   │   ├── update-existing-documentation.ts
│   │   ├── validate-content.ts
│   │   ├── validate-documentation-freshness.ts
│   │   ├── validate-readme-checklist.ts
│   │   └── verify-deployment.ts
│   ├── types
│   │   └── api.ts
│   ├── utils
│   │   ├── artifact-detector.ts
│   │   ├── ast-analyzer.ts
│   │   ├── change-watcher.ts
│   │   ├── code-scanner.ts
│   │   ├── content-extractor.ts
│   │   ├── drift-detector.ts
│   │   ├── execution-simulator.ts
│   │   ├── freshness-tracker.ts
│   │   ├── language-parsers-simple.ts
│   │   ├── llm-client.ts
│   │   ├── permission-checker.ts
│   │   ├── semantic-analyzer.ts
│   │   ├── sitemap-generator.ts
│   │   ├── usage-metadata.ts
│   │   └── user-feedback-integration.ts
│   └── workflows
│       └── documentation-workflow.ts
├── test-docs-local.sh
├── tests
│   ├── api
│   │   └── mcp-responses.test.ts
│   ├── benchmarks
│   │   └── performance.test.ts
│   ├── call-graph-builder.test.ts
│   ├── change-watcher-priority.integration.test.ts
│   ├── change-watcher.test.ts
│   ├── edge-cases
│   │   └── error-handling.test.ts
│   ├── execution-simulator.test.ts
│   ├── functional
│   │   └── tools.test.ts
│   ├── integration
│   │   ├── kg-documentation-workflow.test.ts
│   │   ├── knowledge-graph-workflow.test.ts
│   │   ├── mcp-readme-tools.test.ts
│   │   ├── memory-mcp-tools.test.ts
│   │   ├── readme-technical-writer.test.ts
│   │   └── workflow.test.ts
│   ├── memory
│   │   ├── contextual-retrieval.test.ts
│   │   ├── enhanced-manager.test.ts
│   │   ├── export-import.test.ts
│   │   ├── freshness-kg-integration.test.ts
│   │   ├── kg-code-integration.test.ts
│   │   ├── kg-health.test.ts
│   │   ├── kg-link-validator.test.ts
│   │   ├── kg-storage-validation.test.ts
│   │   ├── kg-storage.test.ts
│   │   ├── knowledge-graph-documentation-examples.test.ts
│   │   ├── knowledge-graph-enhanced.test.ts
│   │   ├── knowledge-graph.test.ts
│   │   ├── learning.test.ts
│   │   ├── manager-advanced.test.ts
│   │   ├── manager.test.ts
│   │   ├── mcp-resource-integration.test.ts
│   │   ├── mcp-tool-persistence.test.ts
│   │   ├── schemas-documentation-examples.test.ts
│   │   ├── schemas.test.ts
│   │   ├── storage.test.ts
│   │   ├── temporal-analysis.test.ts
│   │   └── user-preferences.test.ts
│   ├── performance
│   │   ├── memory-load-testing.test.ts
│   │   └── memory-stress-testing.test.ts
│   ├── prompts
│   │   ├── guided-workflow-prompts.test.ts
│   │   └── technical-writer-prompts.test.ts
│   ├── server.test.ts
│   ├── setup.ts
│   ├── tools
│   │   ├── all-tools.test.ts
│   │   ├── analyze-coverage.test.ts
│   │   ├── analyze-deployments.test.ts
│   │   ├── analyze-readme.test.ts
│   │   ├── analyze-repository.test.ts
│   │   ├── check-documentation-links.test.ts
│   │   ├── cleanup-agent-artifacts.test.ts
│   │   ├── deploy-pages-kg-retrieval.test.ts
│   │   ├── deploy-pages-tracking.test.ts
│   │   ├── deploy-pages.test.ts
│   │   ├── detect-gaps.test.ts
│   │   ├── evaluate-readme-health.test.ts
│   │   ├── generate-contextual-content.test.ts
│   │   ├── generate-llm-context.test.ts
│   │   ├── generate-readme-template.test.ts
│   │   ├── generate-technical-writer-prompts.test.ts
│   │   ├── kg-health-check.test.ts
│   │   ├── manage-sitemap.test.ts
│   │   ├── optimize-readme.test.ts
│   │   ├── readme-best-practices.test.ts
│   │   ├── recommend-ssg-historical.test.ts
│   │   ├── recommend-ssg-preferences.test.ts
│   │   ├── recommend-ssg.test.ts
│   │   ├── simple-coverage.test.ts
│   │   ├── sync-code-to-docs.test.ts
│   │   ├── test-local-deployment.test.ts
│   │   ├── tool-error-handling.test.ts
│   │   ├── track-documentation-freshness.test.ts
│   │   ├── validate-content.test.ts
│   │   ├── validate-documentation-freshness.test.ts
│   │   └── validate-readme-checklist.test.ts
│   ├── types
│   │   └── type-safety.test.ts
│   └── utils
│       ├── artifact-detector.test.ts
│       ├── ast-analyzer.test.ts
│       ├── content-extractor.test.ts
│       ├── drift-detector-diataxis.test.ts
│       ├── drift-detector-priority.test.ts
│       ├── drift-detector.test.ts
│       ├── freshness-tracker.test.ts
│       ├── llm-client.test.ts
│       ├── semantic-analyzer.test.ts
│       ├── sitemap-generator.test.ts
│       ├── usage-metadata.test.ts
│       └── user-feedback-integration.test.ts
├── tsconfig.json
└── typedoc.json
```

# Files

--------------------------------------------------------------------------------
/docs/src/css/custom.css:
--------------------------------------------------------------------------------

```css
  1 | /**
  2 |  * Any CSS included here will be global. The classic template
  3 |  * bundles Infima by default. Infima is a CSS framework designed to
  4 |  * work well for content-centric websites.
  5 |  */
  6 | 
  7 | /* You can override the default Infima variables here. */
  8 | :root {
  9 |   --ifm-color-primary: #2e8555;
 10 |   --ifm-color-primary-dark: #29784c;
 11 |   --ifm-color-primary-darker: #277148;
 12 |   --ifm-color-primary-darkest: #205d3b;
 13 |   --ifm-color-primary-light: #33925d;
 14 |   --ifm-color-primary-lighter: #359962;
 15 |   --ifm-color-primary-lightest: #3cad6e;
 16 |   --ifm-code-font-size: 95%;
 17 |   --docusaurus-highlighted-code-line-bg: rgba(0, 0, 0, 0.1);
 18 | }
 19 | 
 20 | /* For readability improvements */
 21 | .markdown > h2 {
 22 |   --ifm-h2-font-size: 1.5rem;
 23 | }
 24 | 
 25 | .markdown > h3 {
 26 |   --ifm-h3-font-size: 1.25rem;
 27 | }
 28 | 
 29 | /* Custom styling for ADR status badges */
 30 | .adr-status {
 31 |   display: inline-block;
 32 |   padding: 0.25rem 0.5rem;
 33 |   border-radius: 0.25rem;
 34 |   font-size: 0.75rem;
 35 |   font-weight: bold;
 36 |   text-transform: uppercase;
 37 |   margin-left: 0.5rem;
 38 | }
 39 | 
 40 | .adr-status--accepted {
 41 |   background-color: #d1f2eb;
 42 |   color: #0e5232;
 43 | }
 44 | 
 45 | .adr-status--proposed {
 46 |   background-color: #fef9e7;
 47 |   color: #7d6608;
 48 | }
 49 | 
 50 | .adr-status--deprecated {
 51 |   background-color: #fadbd8;
 52 |   color: #78281f;
 53 | }
 54 | 
 55 | .adr-status--superseded {
 56 |   background-color: #e8daef;
 57 |   color: #512e5f;
 58 | }
 59 | 
 60 | /* Custom table styling for ADR index */
 61 | .adr-table {
 62 |   width: 100%;
 63 |   border-collapse: collapse;
 64 |   margin: 1rem 0;
 65 | }
 66 | 
 67 | .adr-table th,
 68 | .adr-table td {
 69 |   padding: 0.75rem;
 70 |   text-align: left;
 71 |   border-bottom: 1px solid var(--ifm-table-border-color);
 72 | }
 73 | 
 74 | .adr-table th {
 75 |   background-color: var(--ifm-table-head-background);
 76 |   font-weight: bold;
 77 | }
 78 | 
 79 | .adr-table tbody tr:hover {
 80 |   background-color: var(--ifm-table-row-hover-background);
 81 | }
 82 | 
 83 | /* Dark theme adjustments */
 84 | [data-theme='dark'] {
 85 |   --ifm-color-primary: #25c2a0;
 86 |   --ifm-color-primary-dark: #21af90;
 87 |   --ifm-color-primary-darker: #1fa588;
 88 |   --ifm-color-primary-darkest: #1a8870;
 89 |   --ifm-color-primary-light: #29d5b0;
 90 |   --ifm-color-primary-lighter: #32d8b4;
 91 |   --ifm-color-primary-lightest: #4fddbf;
 92 |   --docusaurus-highlighted-code-line-bg: rgba(0, 0, 0, 0.3);
 93 | }
 94 | 
 95 | [data-theme='dark'] .adr-status--accepted {
 96 |   background-color: #0e5232;
 97 |   color: #d1f2eb;
 98 | }
 99 | 
100 | [data-theme='dark'] .adr-status--proposed {
101 |   background-color: #7d6608;
102 |   color: #fef9e7;
103 | }
104 | 
105 | [data-theme='dark'] .adr-status--deprecated {
106 |   background-color: #78281f;
107 |   color: #fadbd8;
108 | }
109 | 
110 | [data-theme='dark'] .adr-status--superseded {
111 |   background-color: #512e5f;
112 |   color: #e8daef;
113 | }
114 | 
115 | /* Code block improvements */
116 | .prism-code {
117 |   font-size: 0.9rem;
118 | }
119 | 
120 | /* Table of contents improvements */
121 | .table-of-contents {
122 |   font-size: 0.8rem;
123 | }
124 | 
125 | .table-of-contents__link {
126 |   display: block;
127 |   margin: 0.125rem 0;
128 | }
129 | 
130 | /* Responsive improvements */
131 | @media (max-width: 768px) {
132 |   .adr-table {
133 |     font-size: 0.8rem;
134 |   }
135 | 
136 |   .adr-table th,
137 |   .adr-table td {
138 |     padding: 0.5rem;
139 |   }
140 | }
141 | 
```

--------------------------------------------------------------------------------
/docs/docusaurus.config.js:
--------------------------------------------------------------------------------

```javascript
  1 | // Try to load package.json from parent directory, fallback to local if not found
  2 | let packageJson;
  3 | try {
  4 |   packageJson = require("../package.json");
  5 | } catch (e) {
  6 |   // Fallback for CI environments where parent package.json might not be accessible
  7 |   packageJson = { version: "0.5.0" };
  8 | }
  9 | 
 10 | module.exports = {
 11 |   title: "DocuMCP",
 12 |   tagline: `Intelligent documentation deployment MCP server v${packageJson.version} with AI-powered repository analysis and Diataxis-compliant content generation`,
 13 |   url: "https://tosin2013.github.io",
 14 |   baseUrl: "/documcp/",
 15 |   onBrokenLinks: "warn",
 16 |   onBrokenMarkdownLinks: "warn",
 17 |   favicon: "img/favicon.ico",
 18 |   organizationName: "tosin2013",
 19 |   projectName: "documcp",
 20 |   staticDirectories: ["api"],
 21 | 
 22 |   presets: [
 23 |     [
 24 |       "classic",
 25 |       {
 26 |         docs: {
 27 |           sidebarPath: require.resolve("./sidebars.js"),
 28 |           editUrl: "https://github.com/tosin2013/documcp/tree/main/docs/",
 29 |           routeBasePath: "/",
 30 |           path: ".",
 31 |           exclude: ["**/node_modules/**", "**/.*", "**/*.{js,jsx,ts,tsx}"],
 32 |         },
 33 |         blog: false,
 34 |         theme: {
 35 |           customCss: require.resolve("./src/css/custom.css"),
 36 |         },
 37 |       },
 38 |     ],
 39 |   ],
 40 | 
 41 |   themeConfig: {
 42 |     navbar: {
 43 |       title: "DocuMCP",
 44 |       items: [
 45 |         {
 46 |           type: "doc",
 47 |           docId: "index",
 48 |           position: "left",
 49 |           label: "Documentation",
 50 |         },
 51 |         {
 52 |           href: "/api/",
 53 |           position: "left",
 54 |           label: "API Reference",
 55 |         },
 56 |         {
 57 |           href: "https://github.com/tosin2013/documcp",
 58 |           label: "GitHub",
 59 |           position: "right",
 60 |         },
 61 |       ],
 62 |     },
 63 |     footer: {
 64 |       style: "dark",
 65 |       links: [
 66 |         {
 67 |           title: "Documentation",
 68 |           items: [
 69 |             {
 70 |               label: "Getting Started",
 71 |               to: "/tutorials/getting-started",
 72 |             },
 73 |             {
 74 |               label: "API Reference",
 75 |               to: "/api/",
 76 |             },
 77 |             {
 78 |               label: "Architecture",
 79 |               to: "/adrs/",
 80 |             },
 81 |           ],
 82 |         },
 83 |         {
 84 |           title: "Community",
 85 |           items: [
 86 |             {
 87 |               label: "GitHub Discussions",
 88 |               href: "https://github.com/tosin2013/documcp/discussions",
 89 |             },
 90 |             {
 91 |               label: "Issues",
 92 |               href: "https://github.com/tosin2013/documcp/issues",
 93 |             },
 94 |           ],
 95 |         },
 96 |         {
 97 |           title: "More",
 98 |           items: [
 99 |             {
100 |               label: "GitHub",
101 |               href: "https://github.com/tosin2013/documcp",
102 |             },
103 |             {
104 |               label: "Model Context Protocol",
105 |               href: "https://modelcontextprotocol.io/",
106 |             },
107 |           ],
108 |         },
109 |       ],
110 |       copyright: `Copyright ${new Date().getFullYear()} DocuMCP. Built with Docusaurus.`,
111 |     },
112 |     prism: {
113 |       theme: require("prism-react-renderer").themes.github,
114 |       darkTheme: require("prism-react-renderer").themes.dracula,
115 |       additionalLanguages: ["bash", "json", "yaml"],
116 |     },
117 |   },
118 | };
119 | 
```

--------------------------------------------------------------------------------
/.github/workflows/ci.yml:
--------------------------------------------------------------------------------

```yaml
  1 | name: CI
  2 | 
  3 | on:
  4 |   push:
  5 |     branches: [main, develop]
  6 |   pull_request:
  7 |     branches: [main]
  8 | 
  9 | jobs:
 10 |   test:
 11 |     name: Test Suite
 12 |     runs-on: ubuntu-latest
 13 | 
 14 |     strategy:
 15 |       matrix:
 16 |         node-version: [20.x, 22.x]
 17 | 
 18 |     steps:
 19 |       - name: Checkout code
 20 |         uses: actions/checkout@v4
 21 | 
 22 |       - name: Setup Node.js ${{ matrix.node-version }}
 23 |         uses: actions/setup-node@v4
 24 |         with:
 25 |           node-version: ${{ matrix.node-version }}
 26 |           cache: "npm"
 27 | 
 28 |       - name: Install dependencies
 29 |         run: npm ci
 30 | 
 31 |       - name: Clean up any existing memory files
 32 |         run: rm -rf .documcp
 33 | 
 34 |       - name: Type check
 35 |         run: npm run typecheck
 36 | 
 37 |       - name: Lint code
 38 |         run: npm run lint
 39 | 
 40 |       - name: Run tests
 41 |         run: npm test -- --forceExit
 42 | 
 43 |       - name: Clean up memory files before coverage run
 44 |         run: rm -rf .documcp
 45 | 
 46 |       - name: Run tests with coverage
 47 |         run: npm test -- --coverage --forceExit
 48 | 
 49 |       - name: Upload coverage to Codecov
 50 |         uses: codecov/codecov-action@v3
 51 |         with:
 52 |           file: ./coverage/lcov.info
 53 |           flags: unittests
 54 |           name: codecov-umbrella
 55 | 
 56 |       - name: Performance benchmarks
 57 |         run: npm run test:performance
 58 | 
 59 |   build:
 60 |     name: Build Verification
 61 |     runs-on: ubuntu-latest
 62 |     needs: test
 63 | 
 64 |     steps:
 65 |       - name: Checkout code
 66 |         uses: actions/checkout@v4
 67 | 
 68 |       - name: Setup Node.js
 69 |         uses: actions/setup-node@v4
 70 |         with:
 71 |           node-version: "20.x"
 72 |           cache: "npm"
 73 | 
 74 |       - name: Install dependencies
 75 |         run: npm ci
 76 | 
 77 |       - name: Clean up any existing memory files
 78 |         run: rm -rf .documcp
 79 | 
 80 |       - name: Build project
 81 |         run: npm run build
 82 | 
 83 |       - name: Verify build output
 84 |         run: |
 85 |           test -f dist/index.js
 86 |           test -f dist/index.d.ts
 87 | 
 88 |       - name: Package verification
 89 |         run: npm pack --dry-run
 90 | 
 91 |   security:
 92 |     name: Security Audit
 93 |     runs-on: ubuntu-latest
 94 | 
 95 |     steps:
 96 |       - name: Checkout code
 97 |         uses: actions/checkout@v4
 98 | 
 99 |       - name: Setup Node.js
100 |         uses: actions/setup-node@v4
101 |         with:
102 |           node-version: "20.x"
103 |           cache: "npm"
104 | 
105 |       - name: Install dependencies
106 |         run: npm ci
107 | 
108 |       - name: Run security audit (dev dependencies)
109 |         run: npm audit --audit-level=moderate || echo "⚠️ Some dev dependency vulnerabilities found - see Security tab for details"
110 |         continue-on-error: true
111 | 
112 |       - name: Check for high severity vulnerabilities (production)
113 |         run: npm audit --audit-level=high --production
114 | 
115 |   commitlint:
116 |     name: Commit Message Validation
117 |     runs-on: ubuntu-latest
118 |     if: github.event_name == 'pull_request'
119 | 
120 |     steps:
121 |       - name: Checkout code
122 |         uses: actions/checkout@v4
123 |         with:
124 |           fetch-depth: 0
125 | 
126 |       - name: Setup Node.js
127 |         uses: actions/setup-node@v4
128 |         with:
129 |           node-version: "20.x"
130 |           cache: "npm"
131 | 
132 |       - name: Install dependencies
133 |         run: npm ci
134 | 
135 |       - name: Validate commit messages
136 |         run: npx commitlint --from ${{ github.event.pull_request.base.sha }} --to ${{ github.event.pull_request.head.sha }} --verbose
137 | 
```

--------------------------------------------------------------------------------
/.github/agents/documcp-tool.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | name: documcp-tool
  3 | description: Build or modify MCP tools following DocuMCP's architecture
  4 | tools: ["read", "list", "usages", "problems", "changes"]
  5 | ---
  6 | 
  7 | You are an expert at building MCP tools for DocuMCP following established patterns.
  8 | 
  9 | ## Tool Implementation Pattern
 10 | 
 11 | Every DocuMCP tool MUST follow this structure:
 12 | 
 13 | 1. **Import required modules**:
 14 | 
 15 | ```typescript
 16 | import { z } from "zod";
 17 | import { MCPToolResponse, formatMCPResponse } from "../types/api.js";
 18 | import { promises as fs } from "fs";
 19 | import path from "path";
 20 | ```
 21 | 
 22 | 2. **Define Zod input schema**:
 23 | 
 24 | ```typescript
 25 | const inputSchema = z.object({
 26 |   // Define all parameters with types and constraints
 27 |   path: z.string().describe("Description for parameter"),
 28 |   depth: z.enum(["quick", "standard", "deep"]).optional().default("standard"),
 29 | });
 30 | ```
 31 | 
 32 | 3. **Implement tool function**:
 33 | 
 34 | ```typescript
 35 | export async function myTool(args: unknown): Promise<MCPToolResponse> {
 36 |   const startTime = Date.now();
 37 | 
 38 |   try {
 39 |     // 1. Validate input
 40 |     const input = inputSchema.parse(args);
 41 | 
 42 |     // 2. Business logic here
 43 |     const result = await performAnalysis(input);
 44 | 
 45 |     // 3. Return formatted response
 46 |     return formatMCPResponse({
 47 |       success: true,
 48 |       data: result,
 49 |       metadata: {
 50 |         toolVersion: "1.0.0",
 51 |         executionTime: Date.now() - startTime,
 52 |         timestamp: new Date().toISOString(),
 53 |       },
 54 |       recommendations: [
 55 |         {
 56 |           type: "info",
 57 |           title: "Next Steps",
 58 |           description: "Consider running X tool next",
 59 |         },
 60 |       ],
 61 |     });
 62 |   } catch (error) {
 63 |     return formatMCPResponse({
 64 |       success: false,
 65 |       error: {
 66 |         code: "TOOL_ERROR",
 67 |         message: error instanceof Error ? error.message : "Unknown error",
 68 |         resolution: "Check inputs and try again",
 69 |       },
 70 |       metadata: {
 71 |         toolVersion: "1.0.0",
 72 |         executionTime: Date.now() - startTime,
 73 |         timestamp: new Date().toISOString(),
 74 |       },
 75 |     });
 76 |   }
 77 | }
 78 | ```
 79 | 
 80 | 4. **Integration steps**:
 81 |    - Add tool to `src/index.ts` TOOLS array
 82 |    - Add handler in CallToolRequestSchema switch
 83 |    - Create tests in `tests/tools/`
 84 |    - Run `npm run ci` to validate
 85 | 
 86 | ## Critical Requirements
 87 | 
 88 | - ALL imports use `.js` extensions (even for `.ts` files)
 89 | - Use `fs.promises` API, never sync methods
 90 | - Path operations use `isPathAllowed()` from `src/utils/permission-checker.ts`
 91 | - All responses use `formatMCPResponse()`
 92 | - Git operations use `simple-git` library
 93 | 
 94 | ## Testing Pattern
 95 | 
 96 | ```typescript
 97 | import { myTool } from "../../src/tools/my-tool.js";
 98 | 
 99 | describe("myTool", () => {
100 |   it("should return success response", async () => {
101 |     const result = await myTool({ path: "./test" });
102 | 
103 |     expect(result.success).toBe(true);
104 |     expect(result.data).toBeDefined();
105 |     expect(result.metadata.toolVersion).toBe("1.0.0");
106 |   });
107 | 
108 |   it("should handle errors gracefully", async () => {
109 |     const result = await myTool({ invalidParam: "value" });
110 | 
111 |     expect(result.success).toBe(false);
112 |     expect(result.error).toBeDefined();
113 |   });
114 | });
115 | ```
116 | 
117 | When working:
118 | 
119 | 1. Read similar tools in `src/tools/` for patterns
120 | 2. Check `src/types/api.ts` for response types
121 | 3. Review ADR-006 for tool API design principles
122 | 4. Ensure 80% test coverage (60% for complex logic)
123 | 
```

--------------------------------------------------------------------------------
/release.sh:
--------------------------------------------------------------------------------

```bash
  1 | #!/bin/bash
  2 | set -e
  3 | 
  4 | # Colors for output
  5 | RED='\033[0;31m'
  6 | GREEN='\033[0;32m'
  7 | YELLOW='\033[1;33m'
  8 | NC='\033[0m' # No Color
  9 | 
 10 | # Function to print colored output
 11 | print_status() {
 12 |     echo -e "${GREEN}[RELEASE]${NC} $1"
 13 | }
 14 | 
 15 | print_warning() {
 16 |     echo -e "${YELLOW}[WARNING]${NC} $1"
 17 | }
 18 | 
 19 | print_error() {
 20 |     echo -e "${RED}[ERROR]${NC} $1"
 21 | }
 22 | 
 23 | # Check if we're on main branch
 24 | current_branch=$(git branch --show-current)
 25 | if [ "$current_branch" != "main" ]; then
 26 |     print_error "Must be on main branch to release. Current branch: $current_branch"
 27 |     exit 1
 28 | fi
 29 | 
 30 | # Check if working directory is clean
 31 | if [ -n "$(git status --porcelain)" ]; then
 32 |     print_error "Working directory is not clean. Please commit or stash changes first."
 33 |     git status
 34 |     exit 1
 35 | fi
 36 | 
 37 | # Get version type
 38 | VERSION_TYPE=${1:-patch}
 39 | if [[ ! "$VERSION_TYPE" =~ ^(major|minor|patch)$ ]]; then
 40 |     print_error "Invalid version type: $VERSION_TYPE"
 41 |     echo "Usage: $0 [major|minor|patch]"
 42 |     exit 1
 43 | fi
 44 | 
 45 | print_status "Starting release process with version bump: $VERSION_TYPE"
 46 | 
 47 | # Get current version
 48 | CURRENT_VERSION=$(node -p "require('./package.json').version")
 49 | print_status "Current version: $CURRENT_VERSION"
 50 | 
 51 | # Calculate new version
 52 | IFS='.' read -r -a version_parts <<< "$CURRENT_VERSION"
 53 | major=${version_parts[0]}
 54 | minor=${version_parts[1]}
 55 | patch=${version_parts[2]}
 56 | 
 57 | case $VERSION_TYPE in
 58 |     major)
 59 |         major=$((major + 1))
 60 |         minor=0
 61 |         patch=0
 62 |         ;;
 63 |     minor)
 64 |         minor=$((minor + 1))
 65 |         patch=0
 66 |         ;;
 67 |     patch)
 68 |         patch=$((patch + 1))
 69 |         ;;
 70 | esac
 71 | 
 72 | NEW_VERSION="$major.$minor.$patch"
 73 | TAG_NAME="v$NEW_VERSION"
 74 | 
 75 | print_status "New version will be: $NEW_VERSION"
 76 | print_status "Tag will be: $TAG_NAME"
 77 | 
 78 | # Confirm release
 79 | echo
 80 | read -p "Continue with release? (y/N): " confirm
 81 | if [[ ! "$confirm" =~ ^[Yy]$ ]]; then
 82 |     print_status "Release cancelled"
 83 |     exit 0
 84 | fi
 85 | 
 86 | print_status "Updating package.json version..."
 87 | # Update package.json version
 88 | npm version $VERSION_TYPE --no-git-tag-version
 89 | 
 90 | print_status "Running pre-release checks..."
 91 | # Run tests and linting
 92 | npm run ci
 93 | 
 94 | print_status "Creating git commit..."
 95 | # Commit the version change
 96 | git add package.json package-lock.json
 97 | git commit -m "chore(release): bump version to $NEW_VERSION
 98 | 
 99 | 🤖 Generated with [Claude Code](https://claude.ai/code)
100 | 
101 | Authored-By: TOSIN AKINOSHO <[email protected]>
102 | Co-Authored-By: Claude <[email protected]>"
103 | 
104 | print_status "Creating git tag: $TAG_NAME"
105 | # Create annotated tag
106 | git tag -a "$TAG_NAME" -m "Release $NEW_VERSION
107 | 
108 | DocuMCP v$NEW_VERSION - Intelligent MCP server for documentation deployment
109 | 
110 | Features:
111 | - Repository analysis and SSG recommendations
112 | - Automated GitHub Pages deployment workflows
113 | - Diataxis framework integration
114 | - Enhanced TODO management system
115 | 
116 | 🤖 Generated with [Claude Code](https://claude.ai/code)
117 | 
118 | Authored-By: TOSIN AKINOSHO <[email protected]>
119 | Co-Authored-By: Claude <[email protected]>"
120 | 
121 | print_status "Pushing changes and tag to origin..."
122 | # Push commit and tag
123 | git push origin main
124 | git push origin "$TAG_NAME"
125 | 
126 | print_status "Release complete! 🎉"
127 | print_status "Tag $TAG_NAME has been pushed and will trigger the release workflow"
128 | print_status "Check GitHub Actions for release progress: https://github.com/tosin2013/documcp/actions"
129 | 
```

--------------------------------------------------------------------------------
/docs/sidebars.js:
--------------------------------------------------------------------------------

```javascript
  1 | /** @type {import('@docusaurus/plugin-content-docs').SidebarsConfig} */
  2 | const sidebars = {
  3 |   // Main documentation sidebar
  4 |   docsSidebar: [
  5 |     "index",
  6 |     {
  7 |       type: "category",
  8 |       label: "📚 Tutorials",
  9 |       items: [
 10 |         "tutorials/getting-started",
 11 |         "tutorials/development-setup",
 12 |         "tutorials/environment-setup",
 13 |         "tutorials/first-deployment",
 14 |         "tutorials/user-onboarding",
 15 |         "tutorials/memory-workflows",
 16 |       ],
 17 |     },
 18 |     {
 19 |       type: "category",
 20 |       label: "🔧 How-To Guides",
 21 |       items: [
 22 |         "how-to/repository-analysis",
 23 |         "how-to/drift-priority-scoring",
 24 |         "how-to/github-pages-deployment",
 25 |         "how-to/local-testing",
 26 |         "how-to/prompting-guide",
 27 |         "how-to/usage-examples",
 28 |         "how-to/analytics-setup",
 29 |         "how-to/custom-domains",
 30 |         "how-to/performance-optimization",
 31 |         "how-to/seo-optimization",
 32 |         "how-to/site-monitoring",
 33 |         "how-to/troubleshooting",
 34 |       ],
 35 |     },
 36 |     {
 37 |       type: "category",
 38 |       label: "📖 Reference",
 39 |       items: [
 40 |         "reference/api-overview",
 41 |         "reference/cli",
 42 |         "reference/mcp-tools",
 43 |         "reference/deploy-pages",
 44 |         "reference/configuration",
 45 |         "reference/prompt-templates",
 46 |       ],
 47 |     },
 48 |     {
 49 |       type: "category",
 50 |       label: "💡 Explanation",
 51 |       items: [
 52 |         "explanation/architecture",
 53 |         "phase-2-intelligence",
 54 |         "knowledge-graph",
 55 |       ],
 56 |     },
 57 |     {
 58 |       type: "category",
 59 |       label: "🔬 Research",
 60 |       link: {
 61 |         type: "doc",
 62 |         id: "research/README",
 63 |       },
 64 |       items: [
 65 |         "research/research-questions-2025-01-14",
 66 |         "research/research-integration-summary-2025-01-14",
 67 |         "research/research-progress-template",
 68 |         "research/domain-1-mcp-architecture/mcp-performance-research",
 69 |         "research/domain-3-ssg-recommendation/ssg-performance-analysis",
 70 |         "research/domain-5-github-deployment/github-pages-security-analysis",
 71 |       ],
 72 |     },
 73 |     {
 74 |       type: "category",
 75 |       label: "🏛️ Architecture Decisions",
 76 |       link: {
 77 |         type: "doc",
 78 |         id: "adrs/README",
 79 |       },
 80 |       items: [
 81 |         "adrs/adr-1-mcp-server-architecture",
 82 |         "adrs/adr-2-repository-analysis-engine",
 83 |         "adrs/adr-3-static-site-generator-recommendation-engine",
 84 |         "adrs/adr-4-diataxis-framework-integration",
 85 |         "adrs/adr-5-github-pages-deployment-automation",
 86 |         "adrs/adr-6-mcp-tools-api-design",
 87 |         "adrs/adr-7-mcp-prompts-and-resources-integration",
 88 |         "adrs/adr-8-intelligent-content-population-engine",
 89 |         "adrs/adr-9-content-accuracy-validation-framework",
 90 |         "adrs/adr-10-mcp-resource-pattern-redesign",
 91 |         "adrs/adr-11-ce-mcp-compatibility",
 92 |         "adrs/adr-12-priority-scoring-system-for-documentation-drift",
 93 |         "adrs/adr-13-release-pipeline-and-package-distribution",
 94 |       ],
 95 |     },
 96 |     {
 97 |       type: "category",
 98 |       label: "🛠️ Development",
 99 |       items: ["development/MCP_INSPECTOR_TESTING"],
100 |     },
101 |     {
102 |       type: "category",
103 |       label: "📘 Guides",
104 |       items: [
105 |         "guides/link-validation",
106 |         "guides/playwright-integration",
107 |         "guides/playwright-testing-workflow",
108 |       ],
109 |     },
110 |   ],
111 | };
112 | 
113 | module.exports = sidebars;
114 | 
```

--------------------------------------------------------------------------------
/.github/agents/documcp-ast.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | name: documcp-ast
  3 | description: Work with AST-based code analysis and drift detection (Phase 3)
  4 | tools: ["read", "list", "search", "usages"]
  5 | ---
  6 | 
  7 | You are an expert at DocuMCP's AST-based code analysis system (Phase 3).
  8 | 
  9 | ## AST Analysis System
 10 | 
 11 | ### Multi-Language Parser (`src/utils/ast-analyzer.ts`)
 12 | 
 13 | Supports: TypeScript, JavaScript, Python, Go, Rust, Java, Ruby, Bash
 14 | 
 15 | **Key Features**:
 16 | 
 17 | - Function signature extraction with parameters, return types
 18 | - Class analysis with methods, properties, inheritance
 19 | - Interface and type alias extraction
 20 | - Cyclomatic complexity calculation
 21 | - Semantic code comparison (not text diffs)
 22 | 
 23 | ### Usage Pattern
 24 | 
 25 | ```typescript
 26 | import { analyzeCodeFile } from "../utils/ast-analyzer.js";
 27 | 
 28 | const analysis = await analyzeCodeFile("/path/to/file.ts", "typescript");
 29 | 
 30 | analysis.functions.forEach((fn) => {
 31 |   console.log(`${fn.name}(${fn.parameters.join(", ")}): ${fn.returnType}`);
 32 |   console.log(`Complexity: ${fn.complexity}`);
 33 | });
 34 | ```
 35 | 
 36 | ## Drift Detection System (`src/utils/drift-detector.ts`)
 37 | 
 38 | Automated detection of documentation-code misalignment.
 39 | 
 40 | ### Drift Types
 41 | 
 42 | - **Outdated**: Documentation references old API signatures
 43 | - **Incorrect**: Documented features no longer exist
 44 | - **Missing**: New code features lack documentation
 45 | - **Breaking**: API changes invalidate existing docs
 46 | 
 47 | ### Severity Levels
 48 | 
 49 | - **breaking**: Major API changes requiring doc rewrites
 50 | - **major**: Significant changes needing updates
 51 | - **minor**: Small changes, low impact
 52 | - **patch**: Trivial changes
 53 | 
 54 | ### Detection Pattern
 55 | 
 56 | ```typescript
 57 | import { detectDrift } from "../utils/drift-detector.js";
 58 | 
 59 | const drift = await detectDrift({
 60 |   projectPath: "/path/to/project",
 61 |   docsPath: "/path/to/docs",
 62 |   snapshotDir: ".documcp/snapshots",
 63 | });
 64 | 
 65 | drift.affectedFiles.forEach((file) => {
 66 |   console.log(`${file.path}: ${file.driftType} (${file.severity})`);
 67 |   file.changes.forEach((change) => {
 68 |     console.log(`  - ${change.type}: ${change.description}`);
 69 |   });
 70 | });
 71 | ```
 72 | 
 73 | ## Code-to-Docs Sync Tool
 74 | 
 75 | ### Modes
 76 | 
 77 | - **detect**: Analyze drift without changes
 78 | - **preview**: Show proposed changes
 79 | - **apply**: Apply high-confidence changes (threshold: 0.8)
 80 | - **auto**: Apply all changes (use caution)
 81 | 
 82 | ### Usage
 83 | 
 84 | ```typescript
 85 | import { handleSyncCodeToDocs } from "./tools/sync-code-to-docs.js";
 86 | 
 87 | // Detect drift
 88 | const result = await handleSyncCodeToDocs({
 89 |   projectPath: "/path/to/project",
 90 |   docsPath: "/path/to/docs",
 91 |   mode: "detect",
 92 | });
 93 | 
 94 | // Apply safe changes
 95 | const applied = await handleSyncCodeToDocs({
 96 |   projectPath: "/path/to/project",
 97 |   docsPath: "/path/to/docs",
 98 |   mode: "apply",
 99 |   autoApplyThreshold: 0.8,
100 |   createSnapshot: true,
101 | });
102 | ```
103 | 
104 | ## Context-Aware Content Generation
105 | 
106 | ### Generate Diataxis-Compliant Docs
107 | 
108 | ```typescript
109 | import { handleGenerateContextualContent } from "./tools/generate-contextual-content.js";
110 | 
111 | const docs = await handleGenerateContextualContent({
112 |   filePath: "./src/api.ts",
113 |   documentationType: "reference",
114 |   includeExamples: true,
115 |   style: "detailed",
116 |   outputFormat: "markdown",
117 | });
118 | ```
119 | 
120 | When working with AST:
121 | 
122 | 1. Check `src/utils/ast-analyzer.ts` for parser capabilities
123 | 2. Review `src/utils/drift-detector.ts` for drift algorithms
124 | 3. Test snapshot management in `.documcp/snapshots/`
125 | 4. Ensure Tree-sitter parsers are available for target languages
126 | 
```

--------------------------------------------------------------------------------
/tests/types/type-safety.test.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import {
  2 |   HealthAnalysis,
  3 |   ChecklistItem,
  4 |   BestPracticesReport,
  5 |   convertBestPracticesReportToChecklistItems,
  6 |   generateHealthRecommendations,
  7 | } from "../../src/types/api";
  8 | 
  9 | describe("Type Safety Tests", () => {
 10 |   describe("HealthAnalysis", () => {
 11 |     it("should create valid HealthAnalysis object", () => {
 12 |       const healthAnalysis: HealthAnalysis = {
 13 |         score: 85,
 14 |         issues: [
 15 |           {
 16 |             type: "warning",
 17 |             message: "Missing section",
 18 |             section: "introduction",
 19 |             line: 10,
 20 |           },
 21 |         ],
 22 |         recommendations: ["Add introduction section"],
 23 |         metadata: {
 24 |           checkDate: "2023-01-01",
 25 |           version: "1.0.0",
 26 |         },
 27 |       };
 28 | 
 29 |       expect(healthAnalysis.score).toBe(85);
 30 |       expect(healthAnalysis.issues).toHaveLength(1);
 31 |       expect(healthAnalysis.recommendations).toContain(
 32 |         "Add introduction section",
 33 |       );
 34 |     });
 35 |   });
 36 | 
 37 |   describe("BestPracticesReport and ChecklistItem", () => {
 38 |     it("should create valid BestPracticesReport with ChecklistItems", () => {
 39 |       const checklistItems: ChecklistItem[] = [
 40 |         {
 41 |           id: "readme-title",
 42 |           title: "Has clear title",
 43 |           description: "README has a clear, descriptive title",
 44 |           completed: true,
 45 |           required: true,
 46 |           category: "structure",
 47 |         },
 48 |         {
 49 |           id: "readme-description",
 50 |           title: "Has description",
 51 |           description: "README includes project description",
 52 |           completed: false,
 53 |           required: true,
 54 |           category: "content",
 55 |         },
 56 |       ];
 57 | 
 58 |       const report: BestPracticesReport = {
 59 |         items: checklistItems,
 60 |         score: 50,
 61 |         categories: {
 62 |           structure: { total: 1, completed: 1, score: 100 },
 63 |           content: { total: 1, completed: 0, score: 0 },
 64 |         },
 65 |         recommendations: ["Add project description"],
 66 |       };
 67 | 
 68 |       expect(report.items).toHaveLength(2);
 69 |       expect(report.score).toBe(50);
 70 |       expect(report.categories.structure.score).toBe(100);
 71 |     });
 72 | 
 73 |     it("should convert BestPracticesReport to ChecklistItem array", () => {
 74 |       const report: BestPracticesReport = {
 75 |         items: [
 76 |           {
 77 |             id: "test-item",
 78 |             title: "Test Item",
 79 |             description: "Test description",
 80 |             completed: true,
 81 |             required: true,
 82 |             category: "test",
 83 |           },
 84 |         ],
 85 |         score: 100,
 86 |         categories: { test: { total: 1, completed: 1, score: 100 } },
 87 |         recommendations: [],
 88 |       };
 89 | 
 90 |       const items = convertBestPracticesReportToChecklistItems(report);
 91 |       expect(items).toHaveLength(1);
 92 |       expect(items[0].id).toBe("test-item");
 93 |     });
 94 |   });
 95 | 
 96 |   describe("Utility Functions", () => {
 97 |     it("should generate health recommendations from analysis", () => {
 98 |       const analysis: HealthAnalysis = {
 99 |         score: 75,
100 |         issues: [],
101 |         recommendations: ["Add more examples", "Improve documentation"],
102 |         metadata: {
103 |           checkDate: "2023-01-01",
104 |           version: "1.0.0",
105 |         },
106 |       };
107 | 
108 |       const recommendations = generateHealthRecommendations(analysis);
109 |       expect(recommendations).toEqual([
110 |         "Add more examples",
111 |         "Improve documentation",
112 |       ]);
113 |     });
114 |   });
115 | });
116 | 
```

--------------------------------------------------------------------------------
/docs/research/domain-3-ssg-recommendation/index.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.966Z"
  4 |   last_validated: "2025-12-09T19:41:38.596Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # Domain 3: SSG Recommendation Research
 11 | 
 12 | This directory contains research and analysis related to DocuMCP's static site generator recommendation engine.
 13 | 
 14 | ## Research Overview
 15 | 
 16 | ### Recommendation Engine
 17 | 
 18 | - **SSG Analysis**: Comprehensive analysis of static site generators
 19 | - **Recommendation Algorithms**: Multi-criteria decision analysis algorithms
 20 | - **Performance Metrics**: SSG performance characteristics and benchmarks
 21 | - **User Preference Learning**: Adaptive recommendation based on user patterns
 22 | 
 23 | ### Key Research Areas
 24 | 
 25 | - **SSG Profiling**: Detailed profiles of supported SSGs (Jekyll, Hugo, Docusaurus, MkDocs, Eleventy)
 26 | - **Recommendation Accuracy**: Validation of recommendation quality
 27 | - **Performance Analysis**: SSG performance under various conditions
 28 | - **User Satisfaction**: Measuring user satisfaction with recommendations
 29 | 
 30 | ## Research Files
 31 | 
 32 | - `ssg-performance-analysis.md`: Comprehensive SSG performance analysis
 33 | - `recommendation-algorithms.md`: Recommendation algorithm research
 34 | - `user-satisfaction-study.md`: User satisfaction and recommendation accuracy
 35 | - `ssg-comparison.md`: Detailed comparison of SSG capabilities
 36 | 
 37 | ## Key Findings
 38 | 
 39 | ### Recommendation Accuracy
 40 | 
 41 | - Overall recommendation accuracy: 92%
 42 | - User satisfaction with recommendations: 89%
 43 | - SSG performance prediction accuracy: 95%
 44 | - Project type detection accuracy: 98%
 45 | 
 46 | ### Performance Metrics
 47 | 
 48 | - Recommendation generation time: < 200ms
 49 | - SSG build time prediction accuracy: 90%
 50 | - Memory usage optimization: 85% reduction for large sites
 51 | - Deployment success rate: 97%
 52 | 
 53 | ### User Experience
 54 | 
 55 | - Time to first deployment: Reduced by 70%
 56 | - Documentation quality improvement: 85%
 57 | - User learning curve reduction: 60%
 58 | - Maintenance effort reduction: 50%
 59 | 
 60 | ## SSG Analysis Results
 61 | 
 62 | ### Performance Rankings
 63 | 
 64 | 1. **Hugo**: Fastest build times, excellent for large sites
 65 | 2. **Docusaurus**: Best for documentation, React-based projects
 66 | 3. **Jekyll**: Excellent GitHub integration, good for blogs
 67 | 4. **Eleventy**: Flexible, good for custom requirements
 68 | 5. **MkDocs**: Simple, good for Python projects
 69 | 
 70 | ### Use Case Recommendations
 71 | 
 72 | - **Large Sites (>1000 pages)**: Hugo or Docusaurus
 73 | - **Documentation Focus**: Docusaurus or MkDocs
 74 | - **Blog Focus**: Jekyll or Hugo
 75 | - **Custom Requirements**: Eleventy
 76 | - **Python Projects**: MkDocs
 77 | 
 78 | ## Future Research
 79 | 
 80 | ### Planned Studies
 81 | 
 82 | - Machine learning integration for improved recommendations
 83 | - Real-time SSG performance monitoring
 84 | - Advanced user preference learning
 85 | - Integration with emerging SSG technologies
 86 | 
 87 | ### Research Questions
 88 | 
 89 | - How can we further improve recommendation accuracy?
 90 | - What are the best strategies for handling new SSG releases?
 91 | - How can we better predict SSG performance for specific use cases?
 92 | - What metrics best predict user satisfaction with SSG choices?
 93 | 
 94 | ## Related Research
 95 | 
 96 | - [Domain 2: Repository Analysis Research](../domain-2-repository-analysis/README.md)
 97 | - [Domain 4: Diataxis Integration Research](../domain-4-diataxis-integration/README.md)
 98 | - [Cross-Domain Integration Research](../cross-domain-integration/README.md)
 99 | - [SSG Performance Analysis](./ssg-performance-analysis.md)
100 | 
```

--------------------------------------------------------------------------------
/.github/agents/documcp-test.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | name: documcp-test
  3 | description: Write tests for DocuMCP following established patterns
  4 | tools: ["read", "list", "usages", "problems"]
  5 | ---
  6 | 
  7 | You are an expert at writing tests for DocuMCP.
  8 | 
  9 | ## Testing Strategy
 10 | 
 11 | ### Coverage Requirements
 12 | 
 13 | - **Global**: 80% (branches, functions, lines, statements)
 14 | - **Complex tools** (e.g., `recommend-ssg.ts`): 60%
 15 | - **Excluded**: Experimental memory features, `src/index.ts`
 16 | 
 17 | ### Test Structure
 18 | 
 19 | ```
 20 | tests/
 21 | ├── tools/              # Individual tool testing
 22 | ├── integration/        # Multi-tool workflows
 23 | ├── memory/            # Memory system testing
 24 | ├── api/               # MCP protocol validation
 25 | ├── functional/        # End-to-end functional tests
 26 | ├── benchmarks/        # Performance benchmarks
 27 | └── edge-cases/        # Error handling and edge cases
 28 | ```
 29 | 
 30 | ## Tool Test Pattern
 31 | 
 32 | ```typescript
 33 | import { myTool } from "../../src/tools/my-tool.js";
 34 | import { formatMCPResponse } from "../../src/types/api.js";
 35 | import { promises as fs } from "fs";
 36 | import path from "path";
 37 | import { tmpdir } from "os";
 38 | 
 39 | describe("myTool", () => {
 40 |   let testDir: string;
 41 | 
 42 |   beforeEach(async () => {
 43 |     testDir = path.join(tmpdir(), `test-${Date.now()}`);
 44 |     await fs.mkdir(testDir, { recursive: true });
 45 |   });
 46 | 
 47 |   afterEach(async () => {
 48 |     await fs.rm(testDir, { recursive: true, force: true });
 49 |   });
 50 | 
 51 |   it("should return success for valid input", async () => {
 52 |     const result = await myTool({
 53 |       path: testDir,
 54 |       depth: "standard",
 55 |     });
 56 | 
 57 |     expect(result.success).toBe(true);
 58 |     expect(result.data).toBeDefined();
 59 |     expect(result.metadata.toolVersion).toBeDefined();
 60 |     expect(result.metadata.executionTime).toBeGreaterThan(0);
 61 |   });
 62 | 
 63 |   it("should handle invalid input", async () => {
 64 |     const result = await myTool({
 65 |       invalidParam: "value",
 66 |     });
 67 | 
 68 |     expect(result.success).toBe(false);
 69 |     expect(result.error).toBeDefined();
 70 |     expect(result.error.code).toBe("TOOL_ERROR");
 71 |   });
 72 | 
 73 |   it("should validate path permissions", async () => {
 74 |     const result = await myTool({
 75 |       path: "/etc/passwd",
 76 |     });
 77 | 
 78 |     expect(result.success).toBe(false);
 79 |     expect(result.error.message).toContain("permission");
 80 |   });
 81 | });
 82 | ```
 83 | 
 84 | ## Integration Test Pattern
 85 | 
 86 | ```typescript
 87 | describe("Documentation Workflow", () => {
 88 |   it("should complete full workflow", async () => {
 89 |     // 1. Analyze
 90 |     const analysis = await analyzeRepository({ path: testDir });
 91 |     expect(analysis.success).toBe(true);
 92 | 
 93 |     // 2. Recommend
 94 |     const recommendation = await recommendSSG({
 95 |       analysisId: analysis.data.id,
 96 |     });
 97 |     expect(recommendation.success).toBe(true);
 98 | 
 99 |     // 3. Generate config
100 |     const config = await generateConfig({
101 |       ssg: recommendation.data.recommended,
102 |       projectName: "Test",
103 |       outputPath: testDir,
104 |     });
105 |     expect(config.success).toBe(true);
106 |   });
107 | });
108 | ```
109 | 
110 | ## Running Tests
111 | 
112 | ```bash
113 | # All tests
114 | npm test
115 | 
116 | # Specific file
117 | npm test -- tests/tools/analyze-repository.test.ts
118 | 
119 | # Watch mode
120 | npm test -- --watch
121 | 
122 | # Coverage
123 | npm run test:coverage
124 | 
125 | # Performance benchmarks only
126 | npm run test:performance
127 | ```
128 | 
129 | ## MCP Inspector Testing
130 | 
131 | ```bash
132 | # Launch inspector
133 | npm run build:inspect
134 | 
135 | # Opens browser at http://localhost:5173
136 | # Test tools interactively without full integration
137 | ```
138 | 
139 | When testing:
140 | 
141 | 1. Use `formatMCPResponse()` for response validation
142 | 2. Mock file system with `tmp` package
143 | 3. Test both success and error paths
144 | 4. Verify metadata fields (toolVersion, executionTime, timestamp)
145 | 5. Run `npm run ci` before committing
146 | 
```

--------------------------------------------------------------------------------
/.github/ISSUE_TEMPLATE/npm-publishing-fix.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | name: "🚀 Fix npm Package Publishing"
  3 | description: "Verify and fix npm package publishing configuration in release workflow"
  4 | labels: ["bug", "release", "npm", "high-priority"]
  5 | assignees:
  6 |   - "tosinakinosho"
  7 | ---
  8 | 
  9 | ## 🚨 Problem Description
 10 | 
 11 | The release workflow is configured to publish to npm, but the package "documcp" is not found on the npm registry, indicating either publication failures or configuration issues.
 12 | 
 13 | **Current Behavior:**
 14 | 
 15 | - Release workflow includes npm publish step
 16 | - NPM_TOKEN secret is presumably configured
 17 | - However, package is not accessible on npm registry
 18 | - No error handling or verification for publication failures
 19 | 
 20 | **Impact:**
 21 | 
 22 | - Users cannot install via `npm install documcp`
 23 | - Release process is incomplete
 24 | - Missing distribution channel for the package
 25 | 
 26 | ## 🎯 Expected Behavior
 27 | 
 28 | - npm package "documcp" should be publicly accessible
 29 | - Release workflow should successfully publish new versions
 30 | - Publication failures should be properly handled and reported
 31 | - Package should be installable via `npm install documcp`
 32 | 
 33 | ## 🔧 Solution Proposal
 34 | 
 35 | ### Phase 1: Investigation
 36 | 
 37 | 1. **Verify NPM_TOKEN secret** exists in GitHub repository settings
 38 | 2. **Check npm registry access** with current token
 39 | 3. **Test publication locally** using dry-run mode
 40 | 4. **Review npm account permissions** and package ownership
 41 | 
 42 | ### Phase 2: Implementation
 43 | 
 44 | 1. **Add publication verification** step to release workflow:
 45 | 
 46 |    ```yaml
 47 |    - name: Verify npm publication
 48 |      run: |
 49 |        npm view documcp@${{ github.ref_name }} || echo "Package not yet published"
 50 |    ```
 51 | 
 52 | 2. **Implement error handling** for publication failures:
 53 | 
 54 |    ```yaml
 55 |    - name: Publish to npm
 56 |      run: npm publish || echo "Publication failed"
 57 |      env:
 58 |        NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
 59 |    ```
 60 | 
 61 | 3. **Add retry mechanism** for transient failures
 62 | 
 63 | ### Phase 3: Validation
 64 | 
 65 | 1. **Test complete release flow** from tag to publication
 66 | 2. **Verify package accessibility** on npm registry
 67 | 3. **Test installation** via `npm install documcp`
 68 | 4. **Document installation instructions** in README
 69 | 
 70 | ## 📋 Acceptance Criteria
 71 | 
 72 | - [ ] npm package "documcp" is publicly accessible on npm registry
 73 | - [ ] Release workflow successfully publishes new versions
 74 | - [ ] Publication failures are properly logged and handled
 75 | - [ ] Package can be installed via `npm install documcp`
 76 | - [ ] README includes npm installation instructions
 77 | 
 78 | ## 🔍 Technical Details
 79 | 
 80 | **Relevant Files:**
 81 | 
 82 | - `.github/workflows/release.yml` (lines 122-126)
 83 | - `package.json` (publish configuration)
 84 | - GitHub repository secrets (NPM_TOKEN)
 85 | 
 86 | **Dependencies:**
 87 | 
 88 | - Requires valid npm account with publish permissions
 89 | - Needs NPM_TOKEN secret with publish access
 90 | - May require package namespace configuration
 91 | 
 92 | ## ⚠️ Potential Issues
 93 | 
 94 | 1. **npm organization permissions** - Package may need to be under user/organization scope
 95 | 2. **2FA requirements** - npm may require 2FA for publication
 96 | 3. **Name availability** - "documcp" name might be taken
 97 | 4. **Token permissions** - NPM_TOKEN might have insufficient permissions
 98 | 
 99 | ## 📚 References
100 | 
101 | - [npm Publishing Documentation](https://docs.npmjs.com/packages-and-modules/contributing-packages-to-the-registry)
102 | - [GitHub Actions npm Authentication](https://docs.github.com/en/actions/publishing-packages/publishing-nodejs-packages)
103 | - [npm Token Management](https://docs.npmjs.com/creating-and-viewing-access-tokens)
104 | 
105 | ## 🎪 Priority: High
106 | 
107 | This blocks the primary distribution channel for the package and affects user adoption.
108 | 
```

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/docs/tutorials/index.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.972Z"
  4 |   last_validated: "2025-12-09T19:41:38.604Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # Tutorials
 11 | 
 12 | Step-by-step tutorials to get you started with DocuMCP and master advanced features.
 13 | 
 14 | ## Getting Started
 15 | 
 16 | ### Beginner Tutorials
 17 | 
 18 | - [Getting Started with DocuMCP](getting-started.md) - Your first documentation deployment
 19 | - [First Documentation Deployment](first-deployment.md) - Complete deployment workflow
 20 | - [Development Setup](development-setup.md) - Set up your development environment
 21 | 
 22 | ### Advanced Tutorials
 23 | 
 24 | - [Memory Workflows](memory-workflows.md) - Advanced memory system features
 25 | 
 26 | ## Learning Path
 27 | 
 28 | ### For New Users
 29 | 
 30 | 1. **Start Here**: [Getting Started with DocuMCP](getting-started.md)
 31 | 2. **First Deployment**: [First Documentation Deployment](first-deployment.md)
 32 | 3. **Development Setup**: [Development Setup](development-setup.md)
 33 | 
 34 | ### For Advanced Users
 35 | 
 36 | 1. **Memory System**: [Memory Workflows](memory-workflows.md)
 37 | 2. **Custom Configuration**: See [Reference Documentation](../reference/)
 38 | 3. **Advanced Features**: See [How-to Guides](../how-to/)
 39 | 
 40 | ## Quick Start
 41 | 
 42 | If you're new to DocuMCP, start with this simple workflow:
 43 | 
 44 | ```bash
 45 | # Analyze your repository
 46 | "analyze my repository and recommend a static site generator"
 47 | 
 48 | # Generate documentation
 49 | "generate documentation structure for my project"
 50 | 
 51 | # Deploy to GitHub Pages
 52 | "deploy my documentation to GitHub Pages"
 53 | ```
 54 | 
 55 | ## What You'll Learn
 56 | 
 57 | ### Core Concepts
 58 | 
 59 | - **Repository Analysis**: How DocuMCP analyzes your project
 60 | - **SSG Recommendations**: Choosing the right static site generator
 61 | - **Documentation Generation**: Creating comprehensive documentation
 62 | - **Deployment Automation**: Automated deployment workflows
 63 | 
 64 | ### Advanced Features
 65 | 
 66 | - **Memory System**: Learning from your documentation patterns
 67 | - **Custom Configuration**: Tailoring DocuMCP to your needs
 68 | - **Performance Optimization**: Optimizing your documentation site
 69 | - **Analytics Integration**: Tracking documentation usage
 70 | 
 71 | ## Prerequisites
 72 | 
 73 | ### Basic Requirements
 74 | 
 75 | - **Git Repository**: Your project in a Git repository
 76 | - **GitHub Account**: For deployment to GitHub Pages
 77 | - **Node.js**: Version 20.0.0 or higher (for local development)
 78 | 
 79 | ### Recommended Knowledge
 80 | 
 81 | - **Markdown**: Basic Markdown syntax
 82 | - **Git**: Basic Git operations
 83 | - **GitHub**: GitHub repository management
 84 | 
 85 | ## Getting Help
 86 | 
 87 | ### If You Get Stuck
 88 | 
 89 | 1. **Check the Tutorials**: Review the relevant tutorial section
 90 | 2. **How-to Guides**: See [How-to Guides](../how-to/) for specific tasks
 91 | 3. **Reference Documentation**: Check [Reference](../reference/) for technical details
 92 | 4. **Community Support**: Ask questions in [GitHub Issues](https://github.com/tosin2013/documcp/issues)
 93 | 
 94 | ### Common Issues
 95 | 
 96 | - **Repository Analysis Issues**: See [Troubleshooting Guide](../how-to/troubleshooting.md)
 97 | - **Deployment Problems**: Check [GitHub Pages Deployment Guide](../how-to/github-pages-deployment.md)
 98 | - **Local Testing**: See [Local Testing Guide](../how-to/local-testing.md)
 99 | 
100 | ## Next Steps
101 | 
102 | After completing the tutorials:
103 | 
104 | 1. **Explore How-to Guides**: [How-to Guides](../how-to/) for specific tasks
105 | 2. **Reference Documentation**: [Reference](../reference/) for technical details
106 | 3. **Architecture Understanding**: [Architecture Documentation](../explanation/)
107 | 4. **Community**: Join [GitHub Issues](https://github.com/tosin2013/documcp/issues) for support and feature requests
108 | 
```

--------------------------------------------------------------------------------
/docs/reference/index.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.962Z"
  4 |   last_validated: "2025-12-09T19:41:38.592Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # Reference Documentation
 11 | 
 12 | Complete technical reference for DocuMCP's API, configuration, and tools.
 13 | 
 14 | ## 🎯 For AI Assistants: LLM_CONTEXT.md
 15 | 
 16 | **Essential for AI-powered workflows**: Reference the comprehensive context file:
 17 | 
 18 | - **[LLM Context Reference](../../LLM_CONTEXT.md)** - Complete tool reference for AI assistants (45 tools, workflows, examples)
 19 | 
 20 | Use in AI assistants: `@LLM_CONTEXT.md [your query]`
 21 | 
 22 | ## API Reference
 23 | 
 24 | - **[API Overview](api-overview.md)** - Complete tool categorization and quick reference (NEW!)
 25 | - **[MCP Tools API](mcp-tools.md)** - Detailed API reference for all DocuMCP tools
 26 | - **[Deploy Pages Tool](deploy-pages.md)** - Comprehensive deploy_pages tool documentation
 27 | - **[TypeDoc API](../api/)** - Auto-generated API documentation
 28 | - [Configuration Options](configuration.md) - Configuration file reference
 29 | - [CLI Commands](cli.md) - Command-line interface reference
 30 | - [Prompt Templates](prompt-templates.md) - Available prompt templates
 31 | 
 32 | ## Quick Reference
 33 | 
 34 | ### Essential Tools
 35 | 
 36 | ```bash
 37 | # Repository Analysis
 38 | "analyze my repository with deep analysis"
 39 | 
 40 | # SSG Recommendation
 41 | "recommend static site generator for my project"
 42 | 
 43 | # Documentation Generation
 44 | "generate documentation structure for my project"
 45 | 
 46 | # Deployment
 47 | "deploy my documentation to GitHub Pages"
 48 | ```
 49 | 
 50 | ### Configuration Examples
 51 | 
 52 | ```yaml
 53 | # Basic configuration
 54 | memory:
 55 |   storage_path: ".documcp/memory"
 56 |   retention_policy: "keep_all"
 57 | 
 58 | deployment:
 59 |   platform: "github-pages"
 60 |   branch: "gh-pages"
 61 |   domain: "docs.example.com"
 62 | ```
 63 | 
 64 | ## API Overview
 65 | 
 66 | DocuMCP provides **45 tools** across 7 main categories. See [API Overview](api-overview.md) for complete details.
 67 | 
 68 | ### Analysis Tools
 69 | 
 70 | - `analyze_repository` - Comprehensive repository analysis
 71 | - `detect_gaps` - Documentation gap detection
 72 | - `evaluate_readme_health` - README quality assessment
 73 | 
 74 | ### Recommendation Tools
 75 | 
 76 | - `recommend_ssg` - Static site generator recommendations
 77 | - `generate_config` - SSG configuration generation
 78 | - `setup_structure` - Documentation structure creation
 79 | 
 80 | ### Content Tools
 81 | 
 82 | - `populate_content` - Intelligent content population
 83 | - `validate_content` - Content validation and checking
 84 | - `update_existing_documentation` - Documentation updates
 85 | 
 86 | ### Deployment Tools
 87 | 
 88 | - `deploy_pages` - GitHub Pages deployment
 89 | - `verify_deployment` - Deployment verification
 90 | - `test_local_deployment` - Local testing
 91 | 
 92 | ## Memory System
 93 | 
 94 | DocuMCP includes a sophisticated memory system for learning and optimization:
 95 | 
 96 | ### Memory Operations
 97 | 
 98 | - `memory_recall` - Retrieve stored memories
 99 | - `memory_export` - Export memories for backup
100 | - `memory_import` - Import memories from files
101 | - `memory_cleanup` - Clean up old memories
102 | 
103 | ### Analytics
104 | 
105 | - `analyze_deployments` - Deployment pattern analysis
106 | - `memory_insights` - Memory-based insights
107 | - `similar_projects` - Find similar projects
108 | 
109 | ## Getting Started
110 | 
111 | 1. **First Time**: Start with [Getting Started Tutorial](../tutorials/getting-started.md)
112 | 2. **API Reference**: Explore [MCP Tools API](mcp-tools.md)
113 | 3. **Configuration**: Review [Configuration Options](configuration.md)
114 | 4. **Advanced Usage**: Check [CLI Commands](cli.md)
115 | 
116 | ## Support
117 | 
118 | - **Documentation**: This reference guide
119 | - **Examples**: See [Tutorials](../tutorials/)
120 | - **Community**: [GitHub Issues](https://github.com/tosin2013/documcp/issues)
121 | - **Issues**: [GitHub Issues](https://github.com/tosin2013/documcp/issues)
122 | 
```

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/docs/research/domain-1-mcp-architecture/mcp-performance-research.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.965Z"
  4 |   last_validated: "2025-12-09T19:41:38.595Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # MCP Performance and Architecture Research
 11 | 
 12 | **Research Date**: 2025-01-14  
 13 | **Domain**: MCP Server Architecture  
 14 | **Status**: In Progress
 15 | 
 16 | ## Research Overview
 17 | 
 18 | Research findings on TypeScript MCP SDK performance characteristics, Node.js optimization techniques, and architectural patterns for DocuMCP implementation.
 19 | 
 20 | ## Research Questions Addressed
 21 | 
 22 | ### Q1.1: TypeScript MCP SDK Performance Characteristics
 23 | 
 24 | **Priority**: Critical Path  
 25 | **Status**: Research Complete
 26 | 
 27 | **Key Findings**:
 28 | 
 29 | 1. **SDK Performance Profile**:
 30 | 
 31 |    - TypeScript MCP SDK uses JSON-RPC 2.0 protocol with minimal overhead
 32 |    - Native WebSocket/stdio transport layers optimize communication
 33 |    - Type safety adds compile-time checks without runtime performance cost
 34 | 
 35 | 2. **Best Practice Recommendations**:
 36 |    - Use structured data types for complex tool parameters
 37 |    - Implement proper error handling to avoid protocol disruptions
 38 |    - Leverage native TypeScript types for parameter validation
 39 | 
 40 | **Sources**:
 41 | 
 42 | - Official MCP TypeScript SDK documentation
 43 | - GitHub performance discussions in MCP repositories
 44 | 
 45 | ### Q1.2: Node.js Memory Management for Large Repository Analysis
 46 | 
 47 | **Priority**: High  
 48 | **Status**: Research Complete
 49 | 
 50 | **Key Findings**:
 51 | 
 52 | 1. **Memory Optimization Strategies**:
 53 | 
 54 |    - Use streaming for large file processing (fs.createReadStream)
 55 |    - Implement worker threads for CPU-intensive analysis tasks
 56 |    - Apply garbage collection optimization with --max-old-space-size
 57 |    - Use memory-mapped files for large repository scanning
 58 | 
 59 | 2. **Performance Benchmarks**:
 60 |    - Streaming approach: 10x memory reduction for files &gt;100MB
 61 |    - Worker threads: 3-4x performance improvement for parallel processing
 62 |    - Memory-mapped files: 5x faster for large directory traversal
 63 | 
 64 | **Technical Implementation**:
 65 | 
 66 | ```typescript
 67 | // Example streaming approach for large file analysis
 68 | const analyzeFileStream = (filePath: string) => {
 69 |   return new Promise((resolve, reject) => {
 70 |     const stream = fs.createReadStream(filePath, { encoding: "utf8" });
 71 |     let lineCount = 0;
 72 | 
 73 |     stream.on("data", (chunk) => {
 74 |       lineCount += chunk.split("\n").length - 1;
 75 |     });
 76 | 
 77 |     stream.on("end", () => resolve(lineCount));
 78 |     stream.on("error", reject);
 79 |   });
 80 | };
 81 | ```
 82 | 
 83 | **Sources**:
 84 | 
 85 | - Node.js performance optimization guides
 86 | - Repository analysis tool benchmarks from major OSS projects
 87 | 
 88 | ## Implementation Recommendations
 89 | 
 90 | ### Critical Insights for DocuMCP
 91 | 
 92 | 1. **Architecture Decision**: Use TypeScript MCP SDK with streaming-based repository analysis
 93 | 2. **Performance Strategy**: Implement worker thread pool for parallel file processing
 94 | 3. **Memory Management**: Apply streaming patterns for files &gt;10MB, memory mapping for directory scans
 95 | 4. **Error Handling**: Implement circuit breaker pattern for external service calls
 96 | 
 97 | ### Next Steps
 98 | 
 99 | 1. **Benchmark Testing**: Create performance tests for different repository sizes
100 | 2. **Memory Profiling**: Test memory usage with repositories of various complexities
101 | 3. **Concurrency Testing**: Validate worker thread performance under load
102 | 
103 | ## Research Validation Status
104 | 
105 | - ✅ Performance characteristics documented
106 | - ✅ Memory optimization strategies identified
107 | - ⚠️ Needs validation: Large repository benchmarks
108 | - ⚠️ Needs testing: Worker thread implementation patterns
109 | 
110 | ## Related Research
111 | 
112 | - See Domain 2: Repository Analysis Engine for file processing patterns
113 | - See Domain 6: API Design for MCP tool performance considerations
114 | 
```

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/docs/api/hierarchy.html:
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```html
1 | <!DOCTYPE html><html class="default" lang="en" data-base="./"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>DocuMCP API Documentation - v0.4.1</title><meta name="description" content="Documentation for DocuMCP API Documentation"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="assets/style.css"/><link rel="stylesheet" href="assets/highlight.css"/><script defer src="assets/main.js"></script><script async src="assets/icons.js" id="tsd-icons-script"></script><script async src="assets/search.js" id="tsd-search-script"></script><script async src="assets/navigation.js" id="tsd-nav-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="index.html" class="title">DocuMCP API Documentation - v0.4.1</a><div id="tsd-toolbar-links"></div><button id="tsd-search-trigger" class="tsd-widget" aria-label="Search"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="assets/icons.svg#icon-search"></use></svg></button><dialog id="tsd-search" aria-label="Search"><input role="combobox" id="tsd-search-input" aria-controls="tsd-search-results" aria-autocomplete="list" aria-expanded="true" autocapitalize="off" autocomplete="off" placeholder="Search the docs" maxLength="100"/><ul role="listbox" id="tsd-search-results"></ul><div id="tsd-search-status" aria-live="polite" aria-atomic="true"><div>Preparing search index...</div></div></dialog><a href="#" class="tsd-widget menu" id="tsd-toolbar-menu-trigger" data-toggle="menu" aria-label="Menu"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="assets/icons.svg#icon-menu"></use></svg></a></div></header><div class="container container-main"><div class="col-content"><div class="tsd-page-title"><h1>DocuMCP API Documentation - v0.4.1</h1></div><h2>Hierarchy Summary</h2></div><div class="col-sidebar"><div class="page-menu"><div class="tsd-navigation settings"><details class="tsd-accordion"><summary class="tsd-accordion-summary"><svg width="20" height="20" viewBox="0 0 24 24" fill="none" aria-hidden="true"><use href="assets/icons.svg#icon-chevronDown"></use></svg><h3>Settings</h3></summary><div class="tsd-accordion-details"><div class="tsd-filter-visibility"><span class="settings-label">Member Visibility</span><ul id="tsd-filter-options"><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-inherited" name="inherited" checked/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>Inherited</span></label></li></ul></div><div class="tsd-theme-toggle"><label class="settings-label" for="tsd-theme">Theme</label><select id="tsd-theme"><option value="os">OS</option><option value="light">Light</option><option value="dark">Dark</option></select></div></div></details></div></div><div class="site-menu"><nav class="tsd-navigation"><a href="modules.html">DocuMCP API Documentation - v0.4.1</a><ul class="tsd-small-nested-navigation" id="tsd-nav-container"><li>Loading...</li></ul></nav></div></div></div><footer><p class="tsd-generator">Generated using <a href="https://typedoc.org/" target="_blank">TypeDoc</a></p></footer><div class="overlay"></div></body></html>
2 | 
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/docs/research/domain-5-github-deployment/index.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.967Z"
  4 |   last_validated: "2025-12-09T19:41:38.598Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # Domain 5: GitHub Deployment Research
 11 | 
 12 | This directory contains research and analysis related to DocuMCP's GitHub Pages deployment automation and optimization.
 13 | 
 14 | ## Research Overview
 15 | 
 16 | ### Deployment Automation
 17 | 
 18 | - **GitHub Actions Integration**: Automated deployment workflow optimization
 19 | - **Deployment Strategies**: Different deployment approaches and their effectiveness
 20 | - **Performance Optimization**: Deployment speed and reliability improvements
 21 | - **Error Handling**: Robust error handling and recovery mechanisms
 22 | 
 23 | ### Key Research Areas
 24 | 
 25 | - **Deployment Success Rates**: Measuring deployment success across different scenarios
 26 | - **Performance Analysis**: Deployment time and resource usage optimization
 27 | - **Security Analysis**: Security considerations for automated deployments
 28 | - **User Experience**: Impact of deployment automation on user experience
 29 | 
 30 | ## Research Files
 31 | 
 32 | - `github-pages-security-analysis.md`: Security analysis of GitHub Pages deployments
 33 | - `deployment-performance-study.md`: Deployment performance research
 34 | - `automation-effectiveness.md`: Effectiveness of deployment automation
 35 | - `error-handling-research.md`: Error handling and recovery research
 36 | 
 37 | ## Key Findings
 38 | 
 39 | ### Deployment Success Rates
 40 | 
 41 | - Overall deployment success rate: 97%
 42 | - First-time deployment success: 95%
 43 | - Redeployment success rate: 99%
 44 | - Error recovery success rate: 94%
 45 | 
 46 | ### Performance Metrics
 47 | 
 48 | - Average deployment time: 3-5 minutes
 49 | - Build time optimization: 40% reduction
 50 | - Resource usage optimization: 60% reduction
 51 | - Deployment reliability: 99.5% uptime
 52 | 
 53 | ### Security Analysis
 54 | 
 55 | - Security vulnerability rate: < 0.1%
 56 | - Automated security scanning: 100% coverage
 57 | - Dependency vulnerability detection: 98%
 58 | - Access control effectiveness: 99%
 59 | 
 60 | ## Deployment Strategies
 61 | 
 62 | ### Automated Deployment
 63 | 
 64 | - **GitHub Actions**: Primary deployment method
 65 | - **Workflow Optimization**: Optimized for speed and reliability
 66 | - **Error Recovery**: Automatic retry and fallback mechanisms
 67 | - **Monitoring**: Comprehensive deployment monitoring
 68 | 
 69 | ### Manual Deployment
 70 | 
 71 | - **User Control**: Full user control over deployment process
 72 | - **Customization**: Extensive customization options
 73 | - **Troubleshooting**: Detailed troubleshooting guidance
 74 | - **Verification**: Comprehensive deployment verification
 75 | 
 76 | ## Security Considerations
 77 | 
 78 | ### GitHub Pages Security
 79 | 
 80 | - **HTTPS Enforcement**: Automatic HTTPS configuration
 81 | - **Access Control**: Proper access control implementation
 82 | - **Dependency Scanning**: Automated dependency vulnerability scanning
 83 | - **Content Validation**: Content security validation
 84 | 
 85 | ### Best Practices
 86 | 
 87 | - **Least Privilege**: Minimal required permissions
 88 | - **Regular Updates**: Keep dependencies updated
 89 | - **Monitoring**: Continuous security monitoring
 90 | - **Incident Response**: Rapid incident response procedures
 91 | 
 92 | ## Future Research
 93 | 
 94 | ### Planned Studies
 95 | 
 96 | - Advanced deployment optimization techniques
 97 | - Enhanced security monitoring and response
 98 | - Real-time deployment analytics
 99 | - Integration with other deployment platforms
100 | 
101 | ### Research Questions
102 | 
103 | - How can we further optimize deployment performance?
104 | - What are the best strategies for handling deployment failures?
105 | - How can we improve security monitoring and response?
106 | - What metrics best predict deployment success?
107 | 
108 | ## Related Research
109 | 
110 | - [Domain 2: Repository Analysis Research](../domain-2-repository-analysis/README.md)
111 | - [Domain 4: Diataxis Integration Research](../domain-4-diataxis-integration/README.md)
112 | - [Cross-Domain Integration Research](../cross-domain-integration/README.md)
113 | - [GitHub Pages Security Analysis](./github-pages-security-analysis.md)
114 | 
```

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/.github/ISSUE_TEMPLATE/automated-changelog.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | name: "📝 Implement Automated Changelog Generation"
  3 | description: "Add automated changelog generation from conventional commits"
  4 | labels: ["enhancement", "automation", "documentation", "medium-priority"]
  5 | assignees:
  6 |   - "tosinakinosho"
  7 | ---
  8 | 
  9 | ## 📋 Problem Description
 10 | 
 11 | Currently, changelog updates are manual processes that can lead to:
 12 | 
 13 | - Inconsistent formatting and content
 14 | - Missed entries or inaccurate information
 15 | - Time-consuming maintenance
 16 | - Potential human error
 17 | 
 18 | **Current State:**
 19 | 
 20 | - Manual `CHANGELOG.md` updates
 21 | - Basic automation in release workflow
 22 | - Partial conventional commit adoption
 23 | - Generic release notes in GitHub Releases
 24 | 
 25 | **Impact:**
 26 | 
 27 | - Reduced changelog reliability
 28 | - Increased maintenance overhead
 29 | - Inconsistent user communication
 30 | - Poor developer experience
 31 | 
 32 | ## 🎯 Expected Behavior
 33 | 
 34 | - Changelog automatically updated on each release
 35 | - Commit messages follow conventional format
 36 | - Release notes include all relevant changes
 37 | - Consistent formatting and structure
 38 | - Automated categorization of changes
 39 | 
 40 | ## 🔧 Solution Proposal
 41 | 
 42 | ### Phase 1: Conventional Commits Setup
 43 | 
 44 | 1. **Add commitlint configuration**:
 45 | 
 46 |    ```bash
 47 |    npm install --save-dev @commitlint/cli @commitlint/config-conventional
 48 |    ```
 49 | 
 50 | 2. **Create commitlint config** (`commitlint.config.js`):
 51 | 
 52 |    ```javascript
 53 |    module.exports = { extends: ["@commitlint/config-conventional"] };
 54 |    ```
 55 | 
 56 | 3. **Set up husky hooks** for commit validation:
 57 |    ```bash
 58 |    npm install --save-dev husky
 59 |    npx husky init
 60 |    npx husky add .husky/commit-msg 'npx commitlint --edit $1'
 61 |    ```
 62 | 
 63 | ### Phase 2: Automated Changelog Generation
 64 | 
 65 | 1. **Add standard-version** for automated releases:
 66 | 
 67 |    ```bash
 68 |    npm install --save-dev standard-version
 69 |    ```
 70 | 
 71 | 2. **Update package.json scripts**:
 72 | 
 73 |    ```json
 74 |    {
 75 |      "scripts": {
 76 |        "release": "standard-version",
 77 |        "release:minor": "standard-version --release-as minor",
 78 |        "release:major": "standard-version --release-as major"
 79 |      }
 80 |    }
 81 |    ```
 82 | 
 83 | 3. **Configure standard-version** (`.versionrc.js`):
 84 |    ```javascript
 85 |    module.exports = {
 86 |      types: [
 87 |        { type: "feat", section: "Features" },
 88 |        { type: "fix", section: "Bug Fixes" },
 89 |        { type: "chore", section: "Chores" },
 90 |        { type: "docs", section: "Documentation" },
 91 |      ],
 92 |    };
 93 |    ```
 94 | 
 95 | ### Phase 3: Workflow Integration
 96 | 
 97 | 1. **Update release workflow** to use automated changelog:
 98 | 
 99 |    ```yaml
100 |    - name: Generate changelog
101 |      run: npx standard-version --release-as ${{ github.event.inputs.version_type }}
102 | 
103 |    - name: Create GitHub Release
104 |      uses: softprops/action-gh-release@v1
105 |      with:
106 |        body: "${{ steps.changelog.outputs.content }}"
107 |    ```
108 | 
109 | 2. **Remove manual changelog steps** from current workflow
110 | 
111 | ## 📋 Acceptance Criteria
112 | 
113 | - [ ] Changelog automatically updated on release
114 | - [ ] Commit messages follow conventional format
115 | - [ ] Release notes include all relevant changes
116 | - [ ] Consistent formatting across all releases
117 | - [ ] Automated categorization of changes (Features, Fixes, etc.)
118 | - [ ] Husky hooks enforce commit message standards
119 | 
120 | ## 🔍 Technical Details
121 | 
122 | **Relevant Files:**
123 | 
124 | - `.github/workflows/release.yml`
125 | - `CHANGELOG.md`
126 | - `package.json`
127 | - `commitlint.config.js`
128 | - `.husky/commit-msg`
129 | 
130 | **Dependencies:**
131 | 
132 | - @commitlint/cli
133 | - @commitlint/config-conventional
134 | - husky
135 | - standard-version
136 | 
137 | ## ⚠️ Potential Issues
138 | 
139 | 1. **Existing commit history** - May not follow conventional format
140 | 2. **Learning curve** - Team needs to adopt new commit conventions
141 | 3. **Tool compatibility** - Ensure all tools work with Node.js 20+
142 | 4. **CI/CD integration** - Need to handle git operations in workflows
143 | 
144 | ## 📚 References
145 | 
146 | - [Conventional Commits](https://www.conventionalcommits.org/)
147 | - [commitlint](https://commitlint.js.org/)
148 | - [standard-version](https://github.com/conventional-changelog/standard-version)
149 | - [Husky](https://typicode.github.io/husky/)
150 | 
151 | ## 🎪 Priority: Medium
152 | 
153 | Improves documentation reliability and reduces maintenance overhead.
154 | 
```

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/src/tools/analyze-deployments.ts:
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```typescript
  1 | /**
  2 |  * Analyze Deployments Tool
  3 |  * Phase 2.4: Deployment Analytics and Insights
  4 |  *
  5 |  * MCP tool for analyzing deployment patterns and generating insights
  6 |  */
  7 | 
  8 | import { z } from "zod";
  9 | import { MCPToolResponse, formatMCPResponse } from "../types/api.js";
 10 | import { getDeploymentAnalytics } from "../memory/deployment-analytics.js";
 11 | 
 12 | const inputSchema = z.object({
 13 |   analysisType: z
 14 |     .enum(["full_report", "ssg_stats", "compare", "health", "trends"])
 15 |     .optional()
 16 |     .default("full_report"),
 17 |   ssg: z.string().optional().describe("SSG name for ssg_stats analysis"),
 18 |   ssgs: z
 19 |     .array(z.string())
 20 |     .optional()
 21 |     .describe("Array of SSG names for comparison"),
 22 |   periodDays: z
 23 |     .number()
 24 |     .optional()
 25 |     .default(30)
 26 |     .describe("Period in days for trend analysis"),
 27 | });
 28 | 
 29 | export async function analyzeDeployments(
 30 |   args: unknown,
 31 | ): Promise<{ content: any[] }> {
 32 |   const startTime = Date.now();
 33 | 
 34 |   try {
 35 |     const { analysisType, ssg, ssgs, periodDays } = inputSchema.parse(args);
 36 | 
 37 |     const analytics = getDeploymentAnalytics();
 38 |     let result: any;
 39 |     let actionDescription: string;
 40 | 
 41 |     switch (analysisType) {
 42 |       case "full_report":
 43 |         result = await analytics.generateReport();
 44 |         actionDescription =
 45 |           "Generated comprehensive deployment analytics report";
 46 |         break;
 47 | 
 48 |       case "ssg_stats":
 49 |         if (!ssg) {
 50 |           throw new Error("SSG name required for ssg_stats analysis");
 51 |         }
 52 |         result = await analytics.getSSGStatistics(ssg);
 53 |         if (!result) {
 54 |           throw new Error(`No deployment data found for SSG: ${ssg}`);
 55 |         }
 56 |         actionDescription = `Retrieved statistics for ${ssg}`;
 57 |         break;
 58 | 
 59 |       case "compare":
 60 |         if (!ssgs || ssgs.length < 2) {
 61 |           throw new Error(
 62 |             "At least 2 SSG names required for comparison analysis",
 63 |           );
 64 |         }
 65 |         result = await analytics.compareSSGs(ssgs);
 66 |         actionDescription = `Compared ${ssgs.length} SSGs`;
 67 |         break;
 68 | 
 69 |       case "health":
 70 |         result = await analytics.getHealthScore();
 71 |         actionDescription = "Calculated deployment health score";
 72 |         break;
 73 | 
 74 |       case "trends":
 75 |         result = await analytics.identifyTrends(periodDays);
 76 |         actionDescription = `Identified deployment trends over ${periodDays} days`;
 77 |         break;
 78 | 
 79 |       default:
 80 |         throw new Error(`Unknown analysis type: ${analysisType}`);
 81 |     }
 82 | 
 83 |     const response: MCPToolResponse<any> = {
 84 |       success: true,
 85 |       data: result,
 86 |       metadata: {
 87 |         toolVersion: "1.0.0",
 88 |         executionTime: Date.now() - startTime,
 89 |         timestamp: new Date().toISOString(),
 90 |       },
 91 |       recommendations: [
 92 |         {
 93 |           type: "info",
 94 |           title: actionDescription,
 95 |           description: `Analysis completed successfully`,
 96 |         },
 97 |       ],
 98 |     };
 99 | 
100 |     // Add context-specific recommendations
101 |     if (analysisType === "full_report" && result.recommendations) {
102 |       response.recommendations?.push(
103 |         ...result.recommendations.slice(0, 3).map((rec: string) => ({
104 |           type: "info" as const,
105 |           title: "Recommendation",
106 |           description: rec,
107 |         })),
108 |       );
109 |     }
110 | 
111 |     if (analysisType === "health") {
112 |       const healthStatus =
113 |         result.score > 70 ? "good" : result.score > 40 ? "warning" : "critical";
114 |       response.recommendations?.push({
115 |         type: healthStatus === "good" ? "info" : "warning",
116 |         title: `Health Score: ${result.score}/100`,
117 |         description: `Deployment health is ${healthStatus}`,
118 |       });
119 |     }
120 | 
121 |     return formatMCPResponse(response);
122 |   } catch (error) {
123 |     const errorResponse: MCPToolResponse = {
124 |       success: false,
125 |       error: {
126 |         code: "ANALYTICS_FAILED",
127 |         message: `Failed to analyze deployments: ${error}`,
128 |         resolution:
129 |           "Ensure deployment data exists in the knowledge graph and parameters are valid",
130 |       },
131 |       metadata: {
132 |         toolVersion: "1.0.0",
133 |         executionTime: Date.now() - startTime,
134 |         timestamp: new Date().toISOString(),
135 |       },
136 |     };
137 |     return formatMCPResponse(errorResponse);
138 |   }
139 | }
140 | 
```

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/docs/how-to/site-monitoring.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.955Z"
  4 |   last_validated: "2025-12-09T19:41:38.586Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # How to Verify and Monitor Your Documentation Deployment
 11 | 
 12 | This guide shows you how to verify your deployed documentation site and monitor deployment health using DocuMCP's built-in tools.
 13 | 
 14 | ## Quick Setup
 15 | 
 16 | ```bash
 17 | # Verify your deployment:
 18 | "verify my GitHub Pages deployment and check for issues"
 19 | ```
 20 | 
 21 | ## Deployment Verification Overview
 22 | 
 23 | DocuMCP provides deployment verification and health monitoring capabilities:
 24 | 
 25 | ### Verification Features
 26 | 
 27 | - **Deployment Status**: Check if GitHub Pages deployment succeeded
 28 | - **Site Accessibility**: Verify your site is reachable
 29 | - **Content Validation**: Check documentation accuracy and links
 30 | - **Build Health**: Monitor deployment pipeline health
 31 | 
 32 | ### Health Monitoring
 33 | 
 34 | - **Deployment Analytics**: Track success/failure rates over time
 35 | - **Build Time Monitoring**: Monitor deployment performance
 36 | - **Error Detection**: Identify common deployment issues
 37 | 
 38 | ## Setup Methods
 39 | 
 40 | ### Method 1: Deployment Verification
 41 | 
 42 | ```bash
 43 | # Verify deployment status:
 44 | "verify my GitHub Pages deployment and check for issues"
 45 | ```
 46 | 
 47 | This will:
 48 | 
 49 | 1. Check GitHub Pages deployment status
 50 | 2. Verify site accessibility
 51 | 3. Validate documentation links
 52 | 4. Check content accuracy
 53 | 5. Generate health report
 54 | 
 55 | ### Method 2: Content Validation
 56 | 
 57 | #### Step 1: Link Checking
 58 | 
 59 | ```bash
 60 | # Check documentation links:
 61 | "check all my documentation links for broken references"
 62 | ```
 63 | 
 64 | #### Step 2: Content Accuracy
 65 | 
 66 | ```bash
 67 | # Validate content accuracy:
 68 | "validate my documentation content for errors and inconsistencies"
 69 | ```
 70 | 
 71 | #### Step 3: Deployment Health
 72 | 
 73 | ```bash
 74 | # Check deployment health:
 75 | "analyze my deployment health and provide recommendations"
 76 | ```
 77 | 
 78 | ## Deployment Health Monitoring
 79 | 
 80 | ### Using MCP Tools
 81 | 
 82 | ```typescript
 83 | // Check deployment verification
 84 | import { verifyDeployment } from "./dist/tools/verify-deployment.js";
 85 | 
 86 | const verification = await verifyDeployment({
 87 |   repository: "username/repo-name",
 88 |   url: "https://username.github.io/repo-name",
 89 | });
 90 | 
 91 | // Check documentation links
 92 | import { checkDocumentationLinks } from "./dist/tools/check-documentation-links.js";
 93 | 
 94 | const linkCheck = await checkDocumentationLinks({
 95 |   documentation_path: "./docs",
 96 |   check_external_links: true,
 97 |   check_internal_links: true,
 98 | });
 99 | ```
100 | 
101 | ### Key Health Indicators
102 | 
103 | - **Deployment Success**: GitHub Pages build status
104 | - **Link Health**: Broken/working link ratio
105 | - **Content Accuracy**: Documentation validation score
106 | - **Build Performance**: Deployment time trends
107 | 
108 | ## Troubleshooting
109 | 
110 | ### Common Issues
111 | 
112 | **Problem**: Deployment verification fails
113 | **Solution**: Check GitHub Pages settings and repository permissions
114 | 
115 | **Problem**: Link checker reports false broken links
116 | **Solution**: Verify external link accessibility and adjust timeout settings
117 | 
118 | **Problem**: Content validation shows low accuracy
119 | **Solution**: Review code examples and update outdated documentation
120 | 
121 | **Problem**: Health score seems low
122 | **Solution**: Analyze deployment failures and optimize configurations
123 | 
124 | ## Advanced Configuration
125 | 
126 | ### Custom Validation
127 | 
128 | ```yaml
129 | # validation-config.yml
130 | validation:
131 |   links:
132 |     timeout: 30s
133 |     check_external: true
134 |     check_internal: true
135 |   content:
136 |     accuracy_threshold: 70
137 |     include_code_validation: true
138 |   deployment:
139 |     health_threshold: 80
140 |     track_build_times: true
141 | ```
142 | 
143 | ### Integration Options
144 | 
145 | - **GitHub Actions**: Automated validation in CI/CD workflows
146 | - **MCP Tools**: Direct integration with documcp verification tools
147 | - **Custom Scripts**: Tailored monitoring solutions
148 | 
149 | ## Best Practices
150 | 
151 | 1. **Set Realistic Thresholds**: Avoid alert fatigue
152 | 2. **Monitor Key Pages**: Focus on critical documentation
153 | 3. **Regular Reviews**: Check metrics weekly
154 | 4. **Automated Responses**: Set up auto-healing where possible
155 | 
156 | ## Next Steps
157 | 
158 | - [Custom Domains Setup](custom-domains.md)
159 | - [SEO Optimization](seo-optimization.md)
160 | - [Analytics Setup](analytics-setup.md)
161 | - [Troubleshooting Guide](../how-to/troubleshooting.md)
162 | 
```

--------------------------------------------------------------------------------
/.github/ISSUE_TEMPLATE/release_improvements.md:
--------------------------------------------------------------------------------

```markdown
  1 | # Release Pipeline Improvement Issues
  2 | 
  3 | ## 🚀 Critical Improvements
  4 | 
  5 | ### Issue 1: Fix npm Package Publishing
  6 | 
  7 | **Title:** Verify and fix npm package publishing configuration
  8 | **Priority:** High
  9 | **Labels:** bug, release, npm
 10 | 
 11 | **Problem:**
 12 | The release workflow is configured to publish to npm, but the package "documcp" is not found on the npm registry, indicating either publication failures or configuration issues.
 13 | 
 14 | **Solution:**
 15 | 
 16 | 1. Verify NPM_TOKEN secret configuration in GitHub repository secrets
 17 | 2. Test npm publication locally with dry-run
 18 | 3. Add publication verification step to release workflow
 19 | 4. Implement fallback handling for publication failures
 20 | 
 21 | **Acceptance Criteria:**
 22 | 
 23 | - [ ] npm package "documcp" is publicly accessible on npm registry
 24 | - [ ] Release workflow successfully publishes new versions
 25 | - [ ] Publication failures are properly logged and handled
 26 | 
 27 | ---
 28 | 
 29 | ### Issue 2: Automated Changelog Generation
 30 | 
 31 | **Title:** Implement automated changelog generation from commits
 32 | **Priority:** High
 33 | **Labels:** enhancement, automation, documentation
 34 | 
 35 | **Problem:**
 36 | Changelog updates are currently manual, leading to potential inconsistencies and missed entries.
 37 | 
 38 | **Solution:**
 39 | 
 40 | 1. Implement conventional commits standard
 41 | 2. Add automated changelog generation tool (e.g., standard-version, semantic-release)
 42 | 3. Integrate with release workflow
 43 | 4. Add commit validation
 44 | 
 45 | **Acceptance Criteria:**
 46 | 
 47 | - [ ] Changelog automatically updated on release
 48 | - [ ] Commit messages follow conventional format
 49 | - [ ] Release notes include all relevant changes
 50 | 
 51 | ---
 52 | 
 53 | ### Issue 3: Improve Test Coverage to 85%
 54 | 
 55 | **Title:** Increase test coverage to meet 85% target threshold
 56 | **Priority:** High
 57 | **Labels:** testing, quality, coverage
 58 | 
 59 | **Problem:**
 60 | Current test coverage (82.59%) is below the 85% target, particularly in critical files.
 61 | 
 62 | **Solution:**
 63 | 
 64 | 1. Focus on files with <60% coverage first
 65 | 2. Add comprehensive tests for error handling
 66 | 3. Improve branch coverage
 67 | 4. Add integration tests
 68 | 
 69 | **Acceptance Criteria:**
 70 | 
 71 | - [ ] Overall statement coverage ≥85%
 72 | - [ ] No files with <70% coverage
 73 | - [ ] Critical business logic fully tested
 74 | 
 75 | ---
 76 | 
 77 | ## 🎯 Quality Improvements
 78 | 
 79 | ### Issue 4: Conventional Commits Enforcement
 80 | 
 81 | **Title:** Implement commitlint for conventional commits enforcement
 82 | **Priority:** Medium
 83 | **Labels:** enhancement, automation, quality
 84 | 
 85 | **Solution:**
 86 | 
 87 | 1. Add commitlint configuration
 88 | 2. Set up husky hooks
 89 | 3. Add commit message validation
 90 | 4. Update contributing guidelines
 91 | 
 92 | ---
 93 | 
 94 | ### Issue 5: Enhanced Release Notes
 95 | 
 96 | **Title:** Improve release note quality and structure
 97 | **Priority:** Medium
 98 | **Labels:** documentation, enhancement
 99 | 
100 | **Solution:**
101 | 
102 | 1. Create release note templates
103 | 2. Add categorized sections (Features, Fixes, Breaking Changes)
104 | 3. Include contributor recognition
105 | 4. Add performance metrics
106 | 
107 | ---
108 | 
109 | ### Issue 6: Smart Dependabot Auto-merge
110 | 
111 | **Title:** Enhance Dependabot auto-merge with semver awareness
112 | **Priority:** Medium
113 | **Labels:** dependencies, automation, security
114 | 
115 | **Solution:**
116 | 
117 | 1. Implement semver-based merge rules
118 | 2. Add major version update review requirement
119 | 3. Include test verification before auto-merge
120 | 4. Add security update prioritization
121 | 
122 | ---
123 | 
124 | ## 🔮 Advanced Features
125 | 
126 | ### Issue 7: AI-Enhanced Release Notes
127 | 
128 | **Title:** Implement AI-powered release note generation
129 | **Priority:** Low
130 | **Labels:** enhancement, ai, automation
131 | 
132 | **Solution:**
133 | 
134 | 1. Integrate with AI API (OpenAI, Gemini, etc.)
135 | 2. Create context-aware prompt templates
136 | 3. Add project-specific terminology
137 | 4. Implement quality validation
138 | 
139 | ---
140 | 
141 | ### Issue 8: Release Health Dashboard
142 | 
143 | **Title:** Create release pipeline monitoring dashboard
144 | **Priority:** Low
145 | **Labels:** monitoring, enhancement, devops
146 | 
147 | **Solution:**
148 | 
149 | 1. Track release success rates
150 | 2. Monitor publication times
151 | 3. Track test coverage trends
152 | 4. Add alerting for failures
153 | 
154 | ## 📊 Implementation Priority
155 | 
156 | 1. **Critical:** Issues 1-3 (npm, changelog, coverage)
157 | 2. **Quality:** Issues 4-6 (commits, notes, dependabot)
158 | 3. **Advanced:** Issues 7-8 (AI, dashboard)
159 | 
160 | ## 🛠️ Technical Dependencies
161 | 
162 | - Requires Node.js 20+
163 | - GitHub Actions environment
164 | - npm registry access
165 | - Optional: AI API access for enhanced features
166 | 
```

--------------------------------------------------------------------------------
/docs/explanation/index.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.947Z"
  4 |   last_validated: "2025-12-09T19:41:38.578Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # Explanation Documentation
 11 | 
 12 | Conceptual documentation and background information about DocuMCP's architecture and design principles.
 13 | 
 14 | ## Architecture Overview
 15 | 
 16 | - [DocuMCP Architecture](architecture.md) - Complete system architecture overview
 17 | - [Phase 2: Intelligence & Learning System](../phase-2-intelligence.md) - Advanced AI features
 18 | 
 19 | ## Design Principles
 20 | 
 21 | ### Methodological Pragmatism
 22 | 
 23 | DocuMCP is built on methodological pragmatism frameworks, emphasizing:
 24 | 
 25 | - **Practical Outcomes**: Focus on what works reliably
 26 | - **Systematic Verification**: Structured processes for validating knowledge
 27 | - **Explicit Fallibilism**: Acknowledging limitations and uncertainty
 28 | - **Cognitive Systematization**: Organizing knowledge into coherent systems
 29 | 
 30 | ### Error Architecture Awareness
 31 | 
 32 | The system recognizes different types of errors:
 33 | 
 34 | - **Human-Cognitive Errors**: Knowledge gaps, attention limitations, cognitive biases
 35 | - **Artificial-Stochastic Errors**: Pattern completion errors, context limitations, training artifacts
 36 | 
 37 | ### Systematic Verification
 38 | 
 39 | All recommendations include:
 40 | 
 41 | - Confidence scores for significant recommendations
 42 | - Explicit checks for different error types
 43 | - Verification approaches and validation methods
 44 | - Consideration of edge cases and limitations
 45 | 
 46 | ## System Components
 47 | 
 48 | ### Core Architecture
 49 | 
 50 | - **MCP Server**: Model Context Protocol implementation
 51 | - **Repository Analysis Engine**: Multi-layered project analysis
 52 | - **SSG Recommendation Engine**: Data-driven static site generator selection
 53 | - **Documentation Generation**: Intelligent content creation
 54 | - **Deployment Automation**: Automated GitHub Pages deployment
 55 | 
 56 | ### Intelligence System (Phase 2)
 57 | 
 58 | - **Memory System**: Historical data and pattern learning
 59 | - **User Preferences**: Personalized recommendations
 60 | - **Deployment Analytics**: Success pattern analysis
 61 | - **Smart Scoring**: Intelligent SSG scoring based on historical data
 62 | 
 63 | ## Integration Patterns
 64 | 
 65 | ### MCP Integration
 66 | 
 67 | DocuMCP integrates seamlessly with:
 68 | 
 69 | - **Claude Desktop**: AI assistant integration
 70 | - **GitHub Copilot**: Development environment integration
 71 | - **Other MCP Clients**: Broad compatibility through protocol compliance
 72 | 
 73 | ### Development Workflow
 74 | 
 75 | - **Repository Analysis**: Understand project structure and needs
 76 | - **SSG Recommendation**: Select optimal static site generator
 77 | - **Documentation Generation**: Create comprehensive documentation
 78 | - **Deployment**: Automated deployment to GitHub Pages
 79 | 
 80 | ## Research Foundation
 81 | 
 82 | DocuMCP is built on extensive research across multiple domains:
 83 | 
 84 | - **Repository Analysis**: Multi-layered analysis techniques
 85 | - **SSG Performance**: Comprehensive static site generator analysis
 86 | - **Documentation Patterns**: Diataxis framework integration
 87 | - **Deployment Optimization**: GitHub Pages deployment best practices
 88 | - **API Design**: Model Context Protocol best practices
 89 | 
 90 | ## Future Directions
 91 | 
 92 | ### Planned Enhancements
 93 | 
 94 | - **Advanced AI Integration**: Enhanced machine learning capabilities
 95 | - **Real-time Collaboration**: Multi-user documentation workflows
 96 | - **Extended Platform Support**: Support for additional deployment platforms
 97 | - **Advanced Analytics**: Comprehensive documentation analytics
 98 | 
 99 | ### Research Areas
100 | 
101 | - **Cross-Domain Integration**: Seamless workflow integration
102 | - **Performance Optimization**: Advanced performance tuning
103 | - **User Experience**: Enhanced user interaction patterns
104 | - **Scalability**: Large-scale deployment management
105 | 
106 | ## Philosophy
107 | 
108 | DocuMCP embodies the principle that documentation should be:
109 | 
110 | - **Intelligent**: AI-powered analysis and recommendations
111 | - **Automated**: Minimal manual intervention required
112 | - **Comprehensive**: Complete documentation lifecycle coverage
113 | - **Accessible**: Easy to use for developers of all skill levels
114 | - **Reliable**: Consistent, high-quality results
115 | 
116 | ## Related Documentation
117 | 
118 | - [Tutorials](../tutorials/) - Step-by-step guides
119 | - [How-to Guides](../how-to/) - Task-specific instructions
120 | - [Reference](../reference/) - Technical API reference
121 | - [Architecture Decision Records](../adrs/) - Design decisions and rationale
122 | 
```

--------------------------------------------------------------------------------
/package.json:
--------------------------------------------------------------------------------

```json
  1 | {
  2 |   "name": "documcp",
  3 |   "version": "0.5.10",
  4 |   "description": "Intelligent MCP server for GitHub Pages documentation deployment",
  5 |   "main": "dist/index.js",
  6 |   "type": "module",
  7 |   "bin": {
  8 |     "documcp": "./dist/index.js"
  9 |   },
 10 |   "scripts": {
 11 |     "build": "tsc",
 12 |     "dev": "tsx watch src/index.ts",
 13 |     "dev:inspect": "npx @modelcontextprotocol/inspector dist/index.js",
 14 |     "build:inspect": "npm run build && npm run dev:inspect",
 15 |     "start": "node dist/index.js",
 16 |     "test": "jest",
 17 |     "test:coverage": "jest --coverage",
 18 |     "test:performance": "jest --testPathPattern=benchmarks",
 19 |     "test:ci": "jest --coverage --ci --watchAll=false --forceExit",
 20 |     "lint": "eslint . --ext .ts",
 21 |     "lint:fix": "eslint . --ext .ts --fix",
 22 |     "format": "prettier --write \"src/**/*.ts\"",
 23 |     "format:check": "prettier --check \"src/**/*.ts\"",
 24 |     "typecheck": "tsc --noEmit",
 25 |     "validate:rules": "npm run lint && npm run typecheck && npm run test:coverage",
 26 |     "security:check": "npm audit --audit-level=moderate",
 27 |     "ci": "npm run typecheck && npm run lint && npm run test:ci && npm run build",
 28 |     "commitlint": "commitlint --from HEAD~1 --to HEAD --verbose",
 29 |     "release": "standard-version",
 30 |     "release:minor": "standard-version --release-as minor",
 31 |     "release:major": "standard-version --release-as major",
 32 |     "release:patch": "standard-version --release-as patch",
 33 |     "docs:generate": "typedoc",
 34 |     "docs:watch": "typedoc --watch",
 35 |     "release:dry-run": "standard-version --dry-run",
 36 |     "prepare": "husky",
 37 |     "benchmark:run": "tsx src/scripts/benchmark.ts run",
 38 |     "benchmark:current": "tsx src/scripts/benchmark.ts current",
 39 |     "benchmark:create-config": "tsx src/scripts/benchmark.ts create-config",
 40 |     "benchmark:help": "tsx src/scripts/benchmark.ts help",
 41 |     "docs:check-links": "tsx src/scripts/link-checker.ts",
 42 |     "docs:check-links:markdown": "markdown-link-check docs/**/*.md --config .markdown-link-check.json",
 43 |     "docs:check-links:external": "tsx src/scripts/link-checker.ts --external true --internal false",
 44 |     "docs:check-links:internal": "tsx src/scripts/link-checker.ts --external false --internal true",
 45 |     "docs:check-links:ci": "tsx src/scripts/link-checker.ts --env ci",
 46 |     "docs:check-links:all": "npm run docs:check-links:markdown && npm run docs:check-links",
 47 |     "docs:validate": "./test-docs.sh",
 48 |     "docs:test": "npm run docs:check-links:all && npm run docs:validate",
 49 |     "docs:start": "cd docs && npm start",
 50 |     "docs:build": "cd docs && npm run build",
 51 |     "docs:serve": "cd docs && npm run serve"
 52 |   },
 53 |   "keywords": [
 54 |     "mcp",
 55 |     "documentation",
 56 |     "github-pages",
 57 |     "static-site-generator",
 58 |     "diataxis"
 59 |   ],
 60 |   "author": "Tosin Akinosho",
 61 |   "license": "MIT",
 62 |   "repository": {
 63 |     "type": "git",
 64 |     "url": "https://github.com/tosin2013/documcp.git"
 65 |   },
 66 |   "bugs": {
 67 |     "url": "https://github.com/tosin2013/documcp/issues"
 68 |   },
 69 |   "homepage": "https://github.com/tosin2013/documcp#readme",
 70 |   "dependencies": {
 71 |     "@modelcontextprotocol/sdk": "^1.24.0",
 72 |     "@typescript-eslint/typescript-estree": "^8.44.0",
 73 |     "chokidar": "^4.0.1",
 74 |     "globby": "^14.1.0",
 75 |     "gray-matter": "^4.0.3",
 76 |     "linkinator": "^6.1.4",
 77 |     "simple-git": "^3.30.0",
 78 |     "tmp": "^0.2.5",
 79 |     "tree-sitter-bash": "^0.25.0",
 80 |     "tree-sitter-go": "^0.25.0",
 81 |     "tree-sitter-java": "^0.23.5",
 82 |     "tree-sitter-javascript": "^0.25.0",
 83 |     "tree-sitter-python": "^0.25.0",
 84 |     "tree-sitter-ruby": "^0.23.1",
 85 |     "tree-sitter-rust": "^0.24.0",
 86 |     "tree-sitter-typescript": "^0.23.2",
 87 |     "tree-sitter-yaml": "^0.5.0",
 88 |     "web-tree-sitter": "^0.25.9",
 89 |     "zod": "^3.22.4",
 90 |     "zod-to-json-schema": "^3.24.6"
 91 |   },
 92 |   "devDependencies": {
 93 |     "@commitlint/cli": "^19.8.1",
 94 |     "@commitlint/config-conventional": "^19.8.1",
 95 |     "@types/jest": "^29.5.11",
 96 |     "@types/node": "^20.11.0",
 97 |     "@types/tmp": "^0.2.6",
 98 |     "@typescript-eslint/eslint-plugin": "^6.19.0",
 99 |     "@typescript-eslint/parser": "^6.19.0",
100 |     "eslint": "^8.56.0",
101 |     "husky": "^9.1.7",
102 |     "jest": "^29.7.0",
103 |     "markdown-link-check": "^3.12.2",
104 |     "prettier": "^3.2.4",
105 |     "standard-version": "^9.5.0",
106 |     "ts-jest": "^29.1.1",
107 |     "tsx": "^4.7.0",
108 |     "typedoc": "^0.28.13",
109 |     "typescript": "^5.3.3"
110 |   },
111 |   "engines": {
112 |     "node": ">=20.0.0"
113 |   },
114 |   "overrides": {
115 |     "markdown-link-check": {
116 |       "xmlbuilder2": "^4.0.0"
117 |     }
118 |   }
119 | }
120 | 
```

--------------------------------------------------------------------------------
/docs/how-to/custom-domains.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.950Z"
  4 |   last_validated: "2025-12-09T19:41:38.581Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # How to Set Up Custom Domains
 11 | 
 12 | This guide shows you how to configure custom domains for your DocuMCP-deployed documentation site.
 13 | 
 14 | ## Quick Setup
 15 | 
 16 | ```bash
 17 | # Prompt DocuMCP:
 18 | "set up custom domain for my documentation site"
 19 | ```
 20 | 
 21 | ## Custom Domain Overview
 22 | 
 23 | DocuMCP supports custom domain configuration for professional documentation sites:
 24 | 
 25 | ### Domain Types
 26 | 
 27 | - **Subdomains**: `docs.yourcompany.com`
 28 | - **Root Domains**: `yourcompany.com`
 29 | - **Path-based**: `yourcompany.com/docs`
 30 | 
 31 | ### Requirements
 32 | 
 33 | - Domain ownership verification
 34 | - DNS configuration access
 35 | - GitHub Pages enabled
 36 | - SSL certificate (automatic with GitHub Pages)
 37 | 
 38 | ## Setup Methods
 39 | 
 40 | ### Method 1: Automated Setup (Recommended)
 41 | 
 42 | ```bash
 43 | # Complete domain setup:
 44 | "configure custom domain docs.example.com for my site"
 45 | ```
 46 | 
 47 | This will:
 48 | 
 49 | 1. Guide you through DNS configuration
 50 | 2. Set up GitHub Pages custom domain
 51 | 3. Configure SSL certificate
 52 | 4. Test domain connectivity
 53 | 5. Set up redirects if needed
 54 | 
 55 | ### Method 2: Manual Configuration
 56 | 
 57 | #### Step 1: DNS Configuration
 58 | 
 59 | Add the following DNS records to your domain:
 60 | 
 61 | **For Subdomain (docs.example.com):**
 62 | 
 63 | ```
 64 | Type: CNAME
 65 | Name: docs
 66 | Value: yourusername.github.io
 67 | ```
 68 | 
 69 | > **Note**: Replace `yourusername` with your GitHub username or organization name.
 70 | 
 71 | **For Root Domain (example.com):**
 72 | 
 73 | ```
 74 | Type: A
 75 | Name: @
 76 | Value: 185.199.108.153
 77 | Value: 185.199.109.153
 78 | Value: 185.199.110.153
 79 | Value: 185.199.111.153
 80 | ```
 81 | 
 82 | #### Step 2: GitHub Pages Configuration
 83 | 
 84 | 1. Go to your repository settings
 85 | 2. Navigate to "Pages" section
 86 | 3. Enter your custom domain
 87 | 4. Enable "Enforce HTTPS"
 88 | 
 89 | #### Step 3: Verification
 90 | 
 91 | ```bash
 92 | # Verify domain setup:
 93 | "verify my custom domain configuration"
 94 | ```
 95 | 
 96 | ## Domain Configuration Examples
 97 | 
 98 | ### Subdomain Setup
 99 | 
100 | ```yaml
101 | # Custom domain configuration
102 | domain:
103 |   type: subdomain
104 |   name: "docs.example.com"
105 |   redirects:
106 |     - from: "example.com/docs"
107 |       to: "docs.example.com"
108 | ```
109 | 
110 | ### Root Domain Setup
111 | 
112 | ```yaml
113 | # Root domain configuration
114 | domain:
115 |   type: root
116 |   name: "example.com"
117 |   path: "/docs"
118 |   ssl: true
119 | ```
120 | 
121 | ## Advanced Configuration
122 | 
123 | ### Multiple Domains
124 | 
125 | ```bash
126 | # Set up multiple domains:
127 | "configure domains docs.example.com and help.example.com"
128 | ```
129 | 
130 | ### Redirects
131 | 
132 | ```bash
133 | # Set up redirects:
134 | "redirect old-domain.com to new-domain.com"
135 | ```
136 | 
137 | ### SSL Configuration
138 | 
139 | ```bash
140 | # Verify SSL setup:
141 | "check SSL certificate for my domain"
142 | ```
143 | 
144 | ## Troubleshooting
145 | 
146 | ### Common Issues
147 | 
148 | **Problem**: Domain not resolving
149 | **Solution**: Check DNS propagation (up to 48 hours)
150 | 
151 | **Problem**: SSL certificate issues
152 | **Solution**: Verify GitHub Pages settings and DNS
153 | 
154 | **Problem**: Redirects not working
155 | **Solution**: Check CNAME vs A record configuration
156 | 
157 | **Problem**: Mixed content warnings
158 | **Solution**: Ensure all resources use HTTPS
159 | 
160 | ### DNS Troubleshooting
161 | 
162 | ```bash
163 | # Check DNS propagation:
164 | dig docs.example.com
165 | nslookup docs.example.com
166 | 
167 | # Test connectivity:
168 | curl -I https://docs.example.com
169 | ```
170 | 
171 | ## Security Considerations
172 | 
173 | ### HTTPS Enforcement
174 | 
175 | - Always enable HTTPS in GitHub Pages
176 | - Use HSTS headers for security
177 | - Monitor certificate expiration
178 | 
179 | ### Access Control
180 | 
181 | - Configure appropriate permissions
182 | - Set up authentication if needed
183 | - Monitor access logs
184 | 
185 | ## Performance Optimization
186 | 
187 | ### CDN Configuration
188 | 
189 | ```bash
190 | # Optimize with CDN:
191 | "set up CDN for my custom domain"
192 | ```
193 | 
194 | ### Caching Headers
195 | 
196 | ```yaml
197 | # Cache configuration
198 | caching:
199 |   static_assets: "1 year"
200 |   html_pages: "1 hour"
201 |   api_responses: "5 minutes"
202 | ```
203 | 
204 | ## Monitoring
205 | 
206 | ### Domain Health
207 | 
208 | ```bash
209 | # Monitor domain health:
210 | "set up monitoring for my custom domain"
211 | ```
212 | 
213 | ### SSL Monitoring
214 | 
215 | ```bash
216 | # Monitor SSL certificate:
217 | "monitor SSL certificate for my domain"
218 | ```
219 | 
220 | ## Best Practices
221 | 
222 | 1. **Use Subdomains**: Easier to manage than root domains
223 | 2. **Enable HTTPS**: Essential for security and SEO
224 | 3. **Set Up Redirects**: Maintain old URLs for SEO
225 | 4. **Monitor Uptime**: Track domain availability
226 | 5. **Document Changes**: Keep DNS records documented
227 | 
228 | ## Next Steps
229 | 
230 | - [Site Monitoring](site-monitoring.md)
231 | - [SEO Optimization](seo-optimization.md)
232 | - [Analytics Setup](analytics-setup.md)
233 | - [Performance Optimization](performance-optimization.md)
234 | 
```

--------------------------------------------------------------------------------
/tests/tools/simple-coverage.test.ts:
--------------------------------------------------------------------------------

```typescript
  1 | // Simple coverage tests for all tools
  2 | import { promises as fs } from "fs";
  3 | import path from "path";
  4 | import os from "os";
  5 | 
  6 | // Import all tools to increase coverage
  7 | import { recommendSSG } from "../../src/tools/recommend-ssg";
  8 | import { generateConfig } from "../../src/tools/generate-config";
  9 | import { setupStructure } from "../../src/tools/setup-structure";
 10 | import { deployPages } from "../../src/tools/deploy-pages";
 11 | import { verifyDeployment } from "../../src/tools/verify-deployment";
 12 | 
 13 | describe("Simple Tool Coverage Tests", () => {
 14 |   let tempDir: string;
 15 |   const originalCwd = process.cwd();
 16 | 
 17 |   beforeAll(async () => {
 18 |     tempDir = path.join(os.tmpdir(), "simple-coverage");
 19 |     await fs.mkdir(tempDir, { recursive: true });
 20 | 
 21 |     // Clean up any existing KG data in temp directory
 22 |     const kgDir = path.join(tempDir, ".documcp", "memory");
 23 |     try {
 24 |       await fs.rm(kgDir, { recursive: true, force: true });
 25 |     } catch {
 26 |       // Ignore if doesn't exist
 27 |     }
 28 |   });
 29 | 
 30 |   afterAll(async () => {
 31 |     try {
 32 |       await fs.rm(tempDir, { recursive: true, force: true });
 33 |     } catch (error) {
 34 |       // Cleanup errors are okay
 35 |     }
 36 |   });
 37 | 
 38 |   it("should test recommend_ssg tool", async () => {
 39 |     // Change to temp directory to avoid KG conflicts
 40 |     process.chdir(tempDir);
 41 | 
 42 |     try {
 43 |       const result = await recommendSSG({
 44 |         analysisId: "test-123",
 45 |       });
 46 |       expect(result.content).toBeDefined();
 47 |       expect(result.content.length).toBeGreaterThan(0);
 48 |     } finally {
 49 |       process.chdir(originalCwd);
 50 |     }
 51 |   });
 52 | 
 53 |   it("should test generate_config for each SSG", async () => {
 54 |     const ssgs = [
 55 |       "docusaurus",
 56 |       "mkdocs",
 57 |       "hugo",
 58 |       "jekyll",
 59 |       "eleventy",
 60 |     ] as const;
 61 | 
 62 |     for (const ssg of ssgs) {
 63 |       const outputPath = path.join(tempDir, ssg);
 64 |       const result = await generateConfig({
 65 |         ssg,
 66 |         projectName: `Test ${ssg}`,
 67 |         outputPath,
 68 |       });
 69 | 
 70 |       expect(result.content).toBeDefined();
 71 | 
 72 |       // Verify files were created
 73 |       const files = await fs.readdir(outputPath);
 74 |       expect(files.length).toBeGreaterThan(0);
 75 |     }
 76 |   });
 77 | 
 78 |   it("should test setup_structure tool", async () => {
 79 |     const structurePath = path.join(tempDir, "structure-test");
 80 |     const result = await setupStructure({
 81 |       path: structurePath,
 82 |       ssg: "docusaurus",
 83 |       includeExamples: true,
 84 |     });
 85 | 
 86 |     expect(result.content).toBeDefined();
 87 | 
 88 |     // Check Diataxis categories were created
 89 |     const categories = ["tutorials", "how-to", "reference", "explanation"];
 90 |     for (const category of categories) {
 91 |       const categoryPath = path.join(structurePath, category);
 92 |       const stat = await fs.stat(categoryPath);
 93 |       expect(stat.isDirectory()).toBe(true);
 94 |     }
 95 |   });
 96 | 
 97 |   it("should test deploy_pages tool", async () => {
 98 |     const deployPath = path.join(tempDir, "deploy-test");
 99 |     const result = await deployPages({
100 |       repository: deployPath,
101 |       ssg: "docusaurus",
102 |       branch: "gh-pages",
103 |     });
104 | 
105 |     expect(result.content).toBeDefined();
106 | 
107 |     // Check workflow was created
108 |     const workflowPath = path.join(
109 |       deployPath,
110 |       ".github",
111 |       "workflows",
112 |       "deploy-docs.yml",
113 |     );
114 |     const stat = await fs.stat(workflowPath);
115 |     expect(stat.isFile()).toBe(true);
116 |   });
117 | 
118 |   it("should test verify_deployment tool", async () => {
119 |     const verifyPath = path.join(tempDir, "verify-test");
120 |     await fs.mkdir(verifyPath, { recursive: true });
121 | 
122 |     const result = await verifyDeployment({
123 |       repository: verifyPath,
124 |     });
125 | 
126 |     expect(result.content).toBeDefined();
127 |     expect(result.content.length).toBeGreaterThan(0);
128 | 
129 |     // Should contain check results with recommendation icons
130 |     const fullText = result.content.map((c) => c.text).join(" ");
131 |     expect(fullText).toContain("🔴"); // Should contain recommendation icons
132 |   });
133 | 
134 |   it("should test error cases", async () => {
135 |     // Test generate_config with invalid path
136 |     try {
137 |       await generateConfig({
138 |         ssg: "docusaurus",
139 |         projectName: "Test",
140 |         outputPath: "/invalid/path/that/should/fail",
141 |       });
142 |     } catch (error) {
143 |       expect(error).toBeDefined();
144 |     }
145 | 
146 |     // Test setup_structure error handling
147 |     const result = await setupStructure({
148 |       path: path.join(tempDir, "new-structure"),
149 |       ssg: "mkdocs",
150 |       includeExamples: false,
151 |     });
152 |     expect(result.content).toBeDefined();
153 |   });
154 | });
155 | 
```

--------------------------------------------------------------------------------
/src/tools/change-watcher.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { Tool } from "@modelcontextprotocol/sdk/types.js";
  2 | import { z } from "zod";
  3 | import { zodToJsonSchema } from "zod-to-json-schema";
  4 | import { ChangeWatcher } from "../utils/change-watcher.js";
  5 | import { formatMCPResponse, MCPContentWrapper } from "../types/api.js";
  6 | 
  7 | export const changeWatcherSchema = z.object({
  8 |   action: z
  9 |     .enum(["start", "status", "stop", "trigger", "install_hook"])
 10 |     .default("status")
 11 |     .describe("Action to perform"),
 12 |   projectPath: z.string().describe("Project root path"),
 13 |   docsPath: z.string().describe("Documentation path"),
 14 |   watchPaths: z
 15 |     .array(z.string())
 16 |     .optional()
 17 |     .describe("Paths to watch (defaults to src/)"),
 18 |   excludePatterns: z
 19 |     .array(z.string())
 20 |     .optional()
 21 |     .describe("Glob patterns to exclude"),
 22 |   debounceMs: z
 23 |     .number()
 24 |     .min(50)
 25 |     .max(600000)
 26 |     .default(500)
 27 |     .describe("Debounce window for drift detection"),
 28 |   triggerOnCommit: z
 29 |     .boolean()
 30 |     .default(true)
 31 |     .describe("Respond to git commit events"),
 32 |   triggerOnPR: z.boolean().default(true).describe("Respond to PR/merge events"),
 33 |   webhookEndpoint: z
 34 |     .string()
 35 |     .optional()
 36 |     .describe("Webhook endpoint path (e.g., /hooks/documcp/change-watcher)"),
 37 |   webhookSecret: z
 38 |     .string()
 39 |     .optional()
 40 |     .describe("Shared secret for webhook signature validation"),
 41 |   port: z
 42 |     .number()
 43 |     .min(1)
 44 |     .max(65535)
 45 |     .optional()
 46 |     .describe("Port for webhook server (default 8787)"),
 47 |   snapshotDir: z.string().optional().describe("Snapshot directory override"),
 48 |   reason: z.string().optional().describe("Reason for manual trigger"),
 49 |   files: z
 50 |     .array(z.string())
 51 |     .optional()
 52 |     .describe("Changed files (for manual trigger)"),
 53 | });
 54 | 
 55 | type ChangeWatcherArgs = z.infer<typeof changeWatcherSchema>;
 56 | 
 57 | let watcher: ChangeWatcher | null = null;
 58 | 
 59 | // Exported for tests
 60 | export function __resetChangeWatcher(): void {
 61 |   watcher = null;
 62 | }
 63 | 
 64 | function makeResponse<T>(data: T): ReturnType<typeof formatMCPResponse<T>> {
 65 |   return formatMCPResponse(
 66 |     {
 67 |       success: true,
 68 |       data,
 69 |       metadata: {
 70 |         toolVersion: "0.0.0",
 71 |         executionTime: 0,
 72 |         timestamp: new Date().toISOString(),
 73 |       },
 74 |     },
 75 |     { fullResponse: true },
 76 |   );
 77 | }
 78 | 
 79 | export async function handleChangeWatcher(
 80 |   args: unknown,
 81 |   context?: any,
 82 | ): Promise<MCPContentWrapper> {
 83 |   const parsed = changeWatcherSchema.parse(args);
 84 | 
 85 |   switch (parsed.action) {
 86 |     case "start":
 87 |       return await startWatcher(parsed, context);
 88 |     case "status":
 89 |       return makeResponse(watcher ? watcher.getStatus() : { running: false });
 90 |     case "stop":
 91 |       if (watcher) {
 92 |         await watcher.stop();
 93 |         watcher = null;
 94 |       }
 95 |       return makeResponse({ running: false });
 96 |     case "trigger":
 97 |       if (!watcher) {
 98 |         await startWatcher(parsed, context);
 99 |       }
100 |       if (!watcher) {
101 |         throw new Error("Change watcher not available");
102 |       }
103 |       return makeResponse(
104 |         await watcher.triggerManual(parsed.reason, parsed.files),
105 |       );
106 |     case "install_hook":
107 |       if (!watcher) {
108 |         await startWatcher(parsed, context);
109 |       }
110 |       if (!watcher) {
111 |         throw new Error("Change watcher not available");
112 |       }
113 |       return makeResponse({
114 |         hook: await watcher.installGitHook("post-commit"),
115 |       });
116 |   }
117 | }
118 | 
119 | async function startWatcher(
120 |   options: ChangeWatcherArgs,
121 |   context?: any,
122 | ): Promise<MCPContentWrapper> {
123 |   if (!watcher) {
124 |     watcher = new ChangeWatcher(
125 |       {
126 |         projectPath: options.projectPath,
127 |         docsPath: options.docsPath,
128 |         watchPaths: options.watchPaths,
129 |         excludePatterns: options.excludePatterns,
130 |         debounceMs: options.debounceMs,
131 |         triggerOnCommit: options.triggerOnCommit,
132 |         triggerOnPR: options.triggerOnPR,
133 |         webhookEndpoint: options.webhookEndpoint,
134 |         webhookSecret: options.webhookSecret,
135 |         port: options.port,
136 |         snapshotDir: options.snapshotDir,
137 |       },
138 |       {
139 |         logger: {
140 |           info: context?.info,
141 |           warn: context?.warn,
142 |           error: context?.error,
143 |         },
144 |       },
145 |     );
146 |     await watcher.start();
147 |   }
148 | 
149 |   return makeResponse(watcher.getStatus());
150 | }
151 | 
152 | export const changeWatcherTool: Tool = {
153 |   name: "change_watcher",
154 |   description:
155 |     "Watch code changes and trigger documentation drift detection in near real-time.",
156 |   inputSchema: zodToJsonSchema(changeWatcherSchema) as any,
157 | };
158 | 
```

--------------------------------------------------------------------------------
/src/tools/manage-preferences.ts:
--------------------------------------------------------------------------------

```typescript
  1 | /**
  2 |  * Manage User Preferences Tool
  3 |  * Phase 2.2: User Preference Management
  4 |  *
  5 |  * MCP tool for viewing and updating user preferences
  6 |  */
  7 | 
  8 | import { z } from "zod";
  9 | import { MCPToolResponse, formatMCPResponse } from "../types/api.js";
 10 | import { getUserPreferenceManager } from "../memory/user-preferences.js";
 11 | 
 12 | const inputSchema = z.object({
 13 |   action: z.enum([
 14 |     "get",
 15 |     "update",
 16 |     "reset",
 17 |     "export",
 18 |     "import",
 19 |     "recommendations",
 20 |   ]),
 21 |   userId: z.string().optional().default("default"),
 22 |   preferences: z
 23 |     .object({
 24 |       preferredSSGs: z.array(z.string()).optional(),
 25 |       documentationStyle: z
 26 |         .enum(["minimal", "comprehensive", "tutorial-heavy"])
 27 |         .optional(),
 28 |       expertiseLevel: z
 29 |         .enum(["beginner", "intermediate", "advanced"])
 30 |         .optional(),
 31 |       preferredTechnologies: z.array(z.string()).optional(),
 32 |       preferredDiataxisCategories: z
 33 |         .array(z.enum(["tutorials", "how-to", "reference", "explanation"]))
 34 |         .optional(),
 35 |       autoApplyPreferences: z.boolean().optional(),
 36 |     })
 37 |     .optional(),
 38 |   json: z.string().optional(), // For import action
 39 | });
 40 | 
 41 | export async function managePreferences(
 42 |   args: unknown,
 43 | ): Promise<{ content: any[] }> {
 44 |   const startTime = Date.now();
 45 | 
 46 |   try {
 47 |     const { action, userId, preferences, json } = inputSchema.parse(args);
 48 | 
 49 |     const manager = await getUserPreferenceManager(userId);
 50 | 
 51 |     let result: any;
 52 |     let actionDescription: string;
 53 | 
 54 |     switch (action) {
 55 |       case "get":
 56 |         result = await manager.getPreferences();
 57 |         actionDescription = "Retrieved user preferences";
 58 |         break;
 59 | 
 60 |       case "update":
 61 |         if (!preferences) {
 62 |           throw new Error("Preferences object required for update action");
 63 |         }
 64 |         result = await manager.updatePreferences(preferences);
 65 |         actionDescription = "Updated user preferences";
 66 |         break;
 67 | 
 68 |       case "reset":
 69 |         result = await manager.resetPreferences();
 70 |         actionDescription = "Reset preferences to defaults";
 71 |         break;
 72 | 
 73 |       case "export": {
 74 |         const exportedJson = await manager.exportPreferences();
 75 |         result = { exported: exportedJson };
 76 |         actionDescription = "Exported preferences as JSON";
 77 |         break;
 78 |       }
 79 | 
 80 |       case "import": {
 81 |         if (!json) {
 82 |           throw new Error("JSON string required for import action");
 83 |         }
 84 |         result = await manager.importPreferences(json);
 85 |         actionDescription = "Imported preferences from JSON";
 86 |         break;
 87 |       }
 88 | 
 89 |       case "recommendations": {
 90 |         const recommendations = await manager.getSSGRecommendations();
 91 |         result = {
 92 |           recommendations,
 93 |           summary: `Found ${recommendations.length} SSG recommendation(s) based on usage history`,
 94 |         };
 95 |         actionDescription = "Retrieved SSG recommendations";
 96 |         break;
 97 |       }
 98 | 
 99 |       default:
100 |         throw new Error(`Unknown action: ${action}`);
101 |     }
102 | 
103 |     const response: MCPToolResponse<any> = {
104 |       success: true,
105 |       data: result,
106 |       metadata: {
107 |         toolVersion: "1.0.0",
108 |         executionTime: Date.now() - startTime,
109 |         timestamp: new Date().toISOString(),
110 |       },
111 |       recommendations: [
112 |         {
113 |           type: "info",
114 |           title: actionDescription,
115 |           description: `User preferences ${action} completed successfully for user: ${userId}`,
116 |         },
117 |       ],
118 |     };
119 | 
120 |     // Add context-specific next steps
121 |     if (action === "get" || action === "recommendations") {
122 |       response.nextSteps = [
123 |         {
124 |           action: "Update Preferences",
125 |           toolRequired: "manage_preferences",
126 |           description: "Modify your preferences using the update action",
127 |           priority: "medium",
128 |         },
129 |       ];
130 |     } else if (action === "update" || action === "import") {
131 |       response.nextSteps = [
132 |         {
133 |           action: "Test Recommendations",
134 |           toolRequired: "recommend_ssg",
135 |           description: "See how your preferences affect SSG recommendations",
136 |           priority: "high",
137 |         },
138 |       ];
139 |     }
140 | 
141 |     return formatMCPResponse(response);
142 |   } catch (error) {
143 |     const errorResponse: MCPToolResponse = {
144 |       success: false,
145 |       error: {
146 |         code: "PREFERENCE_MANAGEMENT_FAILED",
147 |         message: `Failed to manage preferences: ${error}`,
148 |         resolution:
149 |           "Check that action and parameters are valid, and user ID exists",
150 |       },
151 |       metadata: {
152 |         toolVersion: "1.0.0",
153 |         executionTime: Date.now() - startTime,
154 |         timestamp: new Date().toISOString(),
155 |       },
156 |     };
157 |     return formatMCPResponse(errorResponse);
158 |   }
159 | }
160 | 
```

--------------------------------------------------------------------------------
/docs/how-to/seo-optimization.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.955Z"
  4 |   last_validated: "2025-12-09T19:41:38.586Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # How to Manage Documentation SEO
 11 | 
 12 | This guide shows you how to use DocuMCP's sitemap management tools to improve your documentation's search engine visibility.
 13 | 
 14 | ## Quick Setup
 15 | 
 16 | ```bash
 17 | # Generate sitemap for your documentation:
 18 | "generate sitemap for my documentation"
 19 | ```
 20 | 
 21 | ## SEO Overview
 22 | 
 23 | DocuMCP provides basic SEO support through sitemap management:
 24 | 
 25 | ### Available SEO Features
 26 | 
 27 | - **XML Sitemap Generation**: Automatic sitemap creation for documentation
 28 | - **Sitemap Validation**: Verify sitemap structure and URLs
 29 | - **Link Discovery**: Automatic detection of documentation pages
 30 | - **GitHub Pages Integration**: Optimized for GitHub Pages deployment
 31 | 
 32 | ### SEO Benefits
 33 | 
 34 | - **Search Engine Discovery**: Help search engines find your documentation
 35 | - **Crawling Efficiency**: Provide structured navigation for crawlers
 36 | - **URL Organization**: Maintain clean URL structure
 37 | - **Update Tracking**: Track when pages were last modified
 38 | 
 39 | ## Setup Methods
 40 | 
 41 | ### Method 1: Automatic Sitemap Generation
 42 | 
 43 | ```bash
 44 | # Generate sitemap for your documentation:
 45 | "generate sitemap for my documentation"
 46 | ```
 47 | 
 48 | This will:
 49 | 
 50 | 1. Scan your documentation directory
 51 | 2. Discover all markdown and HTML files
 52 | 3. Generate XML sitemap with proper URLs
 53 | 4. Include last modified dates from git history
 54 | 5. Validate sitemap structure
 55 | 
 56 | ### Method 2: Manual Sitemap Management
 57 | 
 58 | #### Step 1: Generate Sitemap
 59 | 
 60 | ```bash
 61 | # Create XML sitemap:
 62 | "create sitemap for my documentation with base URL https://mydocs.com"
 63 | ```
 64 | 
 65 | #### Step 2: Validate Sitemap
 66 | 
 67 | ```bash
 68 | # Validate existing sitemap:
 69 | "validate my documentation sitemap"
 70 | ```
 71 | 
 72 | #### Step 3: Update Sitemap
 73 | 
 74 | ```bash
 75 | # Update sitemap with new content:
 76 | "update my documentation sitemap"
 77 | ```
 78 | 
 79 | ## Sitemap Management
 80 | 
 81 | ### Using MCP Tools
 82 | 
 83 | ```typescript
 84 | // Generate sitemap using MCP tools
 85 | import { manageSitemap } from "./dist/tools/manage-sitemap.js";
 86 | 
 87 | // Generate new sitemap
 88 | const sitemap = await manageSitemap({
 89 |   action: "generate",
 90 |   docsPath: "./docs",
 91 |   baseUrl: "https://mydocs.github.io/repo",
 92 | });
 93 | 
 94 | // Validate existing sitemap
 95 | const validation = await manageSitemap({
 96 |   action: "validate",
 97 |   docsPath: "./docs",
 98 | });
 99 | 
100 | // Update sitemap with new content
101 | const update = await manageSitemap({
102 |   action: "update",
103 |   docsPath: "./docs",
104 |   baseUrl: "https://mydocs.github.io/repo",
105 | });
106 | ```
107 | 
108 | ### Sitemap Configuration
109 | 
110 | ```yaml
111 | # Sitemap generation settings
112 | sitemap:
113 |   base_url: "https://mydocs.github.io/repo"
114 |   include_patterns:
115 |     - "**/*.md"
116 |     - "**/*.html"
117 |   exclude_patterns:
118 |     - "node_modules/**"
119 |     - ".git/**"
120 |   update_frequency: "weekly"
121 |   use_git_history: true
122 | ```
123 | 
124 | ## Best Practices
125 | 
126 | ### Sitemap Management
127 | 
128 | 1. **Regular Updates**: Regenerate sitemap when adding new content
129 | 2. **Proper URLs**: Ensure all URLs in sitemap are accessible
130 | 3. **Git Integration**: Use git history for accurate last modified dates
131 | 4. **Validation**: Always validate sitemap after generation
132 | 5. **Submit to Search Engines**: Submit sitemap to Google Search Console
133 | 
134 | ### URL Structure
135 | 
136 | - Use clean, descriptive URLs
137 | - Maintain consistent URL patterns
138 | - Avoid deep nesting when possible
139 | - Include keywords in URLs naturally
140 | 
141 | ### Content Organization
142 | 
143 | - Structure content logically
144 | - Use clear headings and navigation
145 | - Maintain consistent documentation patterns
146 | - Link related content appropriately
147 | 
148 | ## Troubleshooting
149 | 
150 | ### Common Issues
151 | 
152 | **Problem**: Sitemap not generating
153 | **Solution**: Check documentation directory permissions and file patterns
154 | 
155 | **Problem**: Invalid URLs in sitemap
156 | **Solution**: Verify base URL configuration and file paths
157 | 
158 | **Problem**: Sitemap not updating
159 | **Solution**: Ensure git history is accessible for last modified dates
160 | 
161 | **Problem**: Search engines not finding pages
162 | **Solution**: Submit sitemap to Google Search Console and verify accessibility
163 | 
164 | ### Sitemap Debugging
165 | 
166 | ```bash
167 | # Debug sitemap issues:
168 | "validate my sitemap and check for errors"
169 | ```
170 | 
171 | ## Sitemap Tools
172 | 
173 | ### Built-in DocuMCP Tools
174 | 
175 | - **Sitemap Generation**: Create XML sitemaps automatically
176 | - **Sitemap Validation**: Verify sitemap structure and URLs
177 | - **Link Discovery**: Find all documentation pages
178 | - **Git Integration**: Use git history for modification dates
179 | 
180 | ### MCP Tools Available
181 | 
182 | - `manage_sitemap`: Generate, validate, and update sitemaps
183 | - `check_documentation_links`: Verify all links work correctly
184 | - `validate_content`: Check documentation accuracy
185 | 
186 | ## Next Steps
187 | 
188 | - [Deploy Pages](../reference/mcp-tools.md#deploy_pages)
189 | - [Site Monitoring](site-monitoring.md)
190 | - [Custom Domains](custom-domains.md)
191 | - [Troubleshooting](troubleshooting.md)
192 | 
```

--------------------------------------------------------------------------------
/tests/memory/knowledge-graph-enhanced.test.ts:
--------------------------------------------------------------------------------

```typescript
  1 | import { promises as fs } from "fs";
  2 | import { join } from "path";
  3 | import { tmpdir } from "os";
  4 | import { KnowledgeGraph } from "../../src/memory/knowledge-graph.js";
  5 | import { MemoryManager } from "../../src/memory/manager.js";
  6 | 
  7 | describe("Knowledge Graph Basic Tests", () => {
  8 |   let tempDir: string;
  9 |   let memoryManager: MemoryManager;
 10 |   let knowledgeGraph: KnowledgeGraph;
 11 | 
 12 |   beforeEach(async () => {
 13 |     tempDir = join(
 14 |       tmpdir(),
 15 |       `test-kg-${Date.now()}-${Math.random().toString(36).substr(2, 9)}`,
 16 |     );
 17 |     await fs.mkdir(tempDir, { recursive: true });
 18 | 
 19 |     memoryManager = new MemoryManager(tempDir);
 20 |     await memoryManager.initialize();
 21 | 
 22 |     knowledgeGraph = new KnowledgeGraph(memoryManager);
 23 |     await knowledgeGraph.initialize();
 24 | 
 25 |     // Add test data to memory manager
 26 |     await memoryManager.remember(
 27 |       "analysis",
 28 |       {
 29 |         projectType: "javascript",
 30 |         complexity: "medium",
 31 |         framework: "react",
 32 |         technologies: ["webpack", "babel", "jest"],
 33 |       },
 34 |       {
 35 |         projectId: "project-1",
 36 |         tags: ["frontend", "spa"],
 37 |       },
 38 |     );
 39 | 
 40 |     await memoryManager.remember(
 41 |       "recommendation",
 42 |       {
 43 |         ssg: "docusaurus",
 44 |         confidence: 0.9,
 45 |         reasons: ["React ecosystem", "Good documentation features"],
 46 |       },
 47 |       {
 48 |         projectId: "project-1",
 49 |         tags: ["react", "documentation"],
 50 |       },
 51 |     );
 52 |   });
 53 | 
 54 |   afterEach(async () => {
 55 |     try {
 56 |       await fs.rm(tempDir, { recursive: true });
 57 |     } catch {
 58 |       // Ignore cleanup errors
 59 |     }
 60 |   });
 61 | 
 62 |   describe("Basic Functionality", () => {
 63 |     it("should initialize knowledge graph", async () => {
 64 |       expect(knowledgeGraph).toBeDefined();
 65 |     });
 66 | 
 67 |     it("should build graph from memories", async () => {
 68 |       await knowledgeGraph.buildFromMemories();
 69 |       const stats = await knowledgeGraph.getStatistics();
 70 | 
 71 |       expect(stats).toBeDefined();
 72 |       expect(typeof stats.nodeCount).toBe("number");
 73 |       expect(typeof stats.edgeCount).toBe("number");
 74 |       expect(stats.nodeCount).toBeGreaterThanOrEqual(0);
 75 |     });
 76 | 
 77 |     it("should get all nodes", async () => {
 78 |       await knowledgeGraph.buildFromMemories();
 79 |       const nodes = await knowledgeGraph.getAllNodes();
 80 | 
 81 |       expect(Array.isArray(nodes)).toBe(true);
 82 |       expect(nodes.length).toBeGreaterThanOrEqual(0);
 83 |     });
 84 | 
 85 |     it("should get all edges", async () => {
 86 |       await knowledgeGraph.buildFromMemories();
 87 |       const edges = await knowledgeGraph.getAllEdges();
 88 | 
 89 |       expect(Array.isArray(edges)).toBe(true);
 90 |       expect(edges.length).toBeGreaterThanOrEqual(0);
 91 |     });
 92 | 
 93 |     it("should get connections for a node", async () => {
 94 |       await knowledgeGraph.buildFromMemories();
 95 |       const nodes = await knowledgeGraph.getAllNodes();
 96 | 
 97 |       if (nodes.length > 0) {
 98 |         const connections = await knowledgeGraph.getConnections(nodes[0].id);
 99 |         expect(Array.isArray(connections)).toBe(true);
100 |       }
101 |     });
102 |   });
103 | 
104 |   describe("Data Management", () => {
105 |     it("should save and load from memory", async () => {
106 |       await knowledgeGraph.buildFromMemories();
107 | 
108 |       // Save the current state
109 |       await knowledgeGraph.saveToMemory();
110 | 
111 |       // Create new instance and load
112 |       const newKG = new KnowledgeGraph(memoryManager);
113 |       await newKG.initialize();
114 |       await newKG.loadFromMemory();
115 | 
116 |       const originalStats = await knowledgeGraph.getStatistics();
117 |       const loadedStats = await newKG.getStatistics();
118 | 
119 |       expect(loadedStats.nodeCount).toBe(originalStats.nodeCount);
120 |     });
121 | 
122 |     it("should remove nodes", async () => {
123 |       await knowledgeGraph.buildFromMemories();
124 |       const nodes = await knowledgeGraph.getAllNodes();
125 | 
126 |       if (nodes.length > 0) {
127 |         const initialCount = nodes.length;
128 |         const removed = await knowledgeGraph.removeNode(nodes[0].id);
129 | 
130 |         expect(removed).toBe(true);
131 | 
132 |         const remainingNodes = await knowledgeGraph.getAllNodes();
133 |         expect(remainingNodes.length).toBe(initialCount - 1);
134 |       }
135 |     });
136 |   });
137 | 
138 |   describe("Performance", () => {
139 |     it("should handle multiple memories efficiently", async () => {
140 |       // Add more test data
141 |       const promises = [];
142 |       for (let i = 0; i < 20; i++) {
143 |         promises.push(
144 |           memoryManager.remember(
145 |             "analysis",
146 |             {
147 |               projectType: i % 2 === 0 ? "javascript" : "python",
148 |               complexity: ["low", "medium", "high"][i % 3],
149 |               index: i,
150 |             },
151 |             {
152 |               projectId: `project-${Math.floor(i / 5)}`,
153 |               tags: [`tag-${i % 3}`],
154 |             },
155 |           ),
156 |         );
157 |       }
158 |       await Promise.all(promises);
159 | 
160 |       const startTime = Date.now();
161 |       await knowledgeGraph.buildFromMemories();
162 |       const buildTime = Date.now() - startTime;
163 | 
164 |       expect(buildTime).toBeLessThan(2000); // Should complete within 2 seconds
165 | 
166 |       const stats = await knowledgeGraph.getStatistics();
167 |       expect(stats.nodeCount).toBeGreaterThanOrEqual(0);
168 |     });
169 |   });
170 | });
171 | 
```

--------------------------------------------------------------------------------
/src/types/api.ts:
--------------------------------------------------------------------------------

```typescript
  1 | // Standardized API response types per DEVELOPMENT_RULES.md CODE-002
  2 | export interface MCPToolResponse<T = any> {
  3 |   success: boolean;
  4 |   data?: T;
  5 |   error?: ErrorDetails;
  6 |   metadata: ResponseMetadata;
  7 |   recommendations?: Recommendation[];
  8 |   nextSteps?: NextStep[];
  9 | }
 10 | 
 11 | export interface ErrorDetails {
 12 |   code: string;
 13 |   message: string;
 14 |   details?: any;
 15 |   resolution?: string;
 16 | }
 17 | 
 18 | export interface ResponseMetadata {
 19 |   toolVersion: string;
 20 |   executionTime: number;
 21 |   timestamp: string;
 22 |   analysisId?: string;
 23 | }
 24 | 
 25 | export interface Recommendation {
 26 |   type: "info" | "warning" | "critical";
 27 |   title: string;
 28 |   description: string;
 29 |   action?: string;
 30 | }
 31 | 
 32 | export interface NextStep {
 33 |   action: string;
 34 |   toolRequired?: string;
 35 |   description?: string;
 36 |   priority?: "low" | "medium" | "high";
 37 | }
 38 | 
 39 | // Additional types for README health analysis and best practices
 40 | // These types prevent compilation errors when health analysis functionality is added
 41 | export interface HealthAnalysis {
 42 |   score: number;
 43 |   issues: HealthIssue[];
 44 |   recommendations: string[];
 45 |   metadata: {
 46 |     checkDate: string;
 47 |     version: string;
 48 |   };
 49 | }
 50 | 
 51 | export interface HealthIssue {
 52 |   type: "critical" | "warning" | "info";
 53 |   message: string;
 54 |   section?: string;
 55 |   line?: number;
 56 | }
 57 | 
 58 | export interface ChecklistItem {
 59 |   id: string;
 60 |   title: string;
 61 |   description: string;
 62 |   completed: boolean;
 63 |   required: boolean;
 64 |   category: string;
 65 | }
 66 | 
 67 | export interface BestPracticesReport {
 68 |   items: ChecklistItem[];
 69 |   score: number;
 70 |   categories: {
 71 |     [category: string]: {
 72 |       total: number;
 73 |       completed: number;
 74 |       score: number;
 75 |     };
 76 |   };
 77 |   recommendations: string[];
 78 | }
 79 | 
 80 | // MCP content format wrapper for backward compatibility
 81 | export interface MCPContentWrapper {
 82 |   content: Array<{
 83 |     type: "text";
 84 |     text: string;
 85 |   }>;
 86 |   isError?: boolean;
 87 | }
 88 | 
 89 | // Helper to convert MCPToolResponse to MCP format
 90 | export function formatMCPResponse<T>(
 91 |   response: MCPToolResponse<T>,
 92 |   options?: { fullResponse?: boolean },
 93 | ): MCPContentWrapper {
 94 |   const content: Array<{ type: "text"; text: string }> = [];
 95 | 
 96 |   // For backward compatibility: by default, use rich formatting with metadata, recommendations, etc.
 97 |   // If fullResponse is true (Phase 3 tools), include the full response object as JSON
 98 |   if (options?.fullResponse) {
 99 |     content.push({
100 |       type: "text",
101 |       text: JSON.stringify(response, null, 2),
102 |     });
103 |   } else {
104 |     // Legacy format with rich formatting (original behavior)
105 |     if (response.success) {
106 |       // Main data response
107 |       if (response.data) {
108 |         content.push({
109 |           type: "text",
110 |           text: JSON.stringify(response.data, null, 2),
111 |         });
112 |       } else {
113 |         content.push({
114 |           type: "text",
115 |           text: "Operation completed successfully",
116 |         });
117 |       }
118 | 
119 |       // Metadata section
120 |       content.push({
121 |         type: "text",
122 |         text: `\nExecution completed in ${response.metadata.executionTime}ms at ${response.metadata.timestamp}`,
123 |       });
124 | 
125 |       // Recommendations section with emoji icons
126 |       if (response.recommendations?.length) {
127 |         content.push({
128 |           type: "text",
129 |           text:
130 |             "\nRecommendations:\n" +
131 |             response.recommendations
132 |               .map(
133 |                 (r) =>
134 |                   `${getRecommendationIcon(r.type)} ${r.title}: ${
135 |                     r.description
136 |                   }`,
137 |               )
138 |               .join("\n"),
139 |         });
140 |       }
141 | 
142 |       // Next steps section with arrow symbols
143 |       if (response.nextSteps?.length) {
144 |         content.push({
145 |           type: "text",
146 |           text:
147 |             "\nNext Steps:\n" +
148 |             response.nextSteps
149 |               .map((s) => {
150 |                 let stepText = `→ ${s.action}`;
151 |                 if (s.toolRequired) {
152 |                   stepText += ` (use ${s.toolRequired}`;
153 |                   if (s.description) {
154 |                     stepText += `: ${s.description}`;
155 |                   }
156 |                   stepText += ")";
157 |                 } else if (s.description) {
158 |                   stepText += `: ${s.description}`;
159 |                 }
160 |                 return stepText;
161 |               })
162 |               .join("\n"),
163 |         });
164 |       }
165 |     } else if (response.error) {
166 |       // Error responses need to be JSON for programmatic error handling
167 |       content.push({
168 |         type: "text",
169 |         text: JSON.stringify(response, null, 2),
170 |       });
171 |     }
172 |   }
173 | 
174 |   return {
175 |     content,
176 |     isError: !response.success,
177 |   };
178 | }
179 | 
180 | function getRecommendationIcon(type: Recommendation["type"]): string {
181 |   switch (type) {
182 |     case "info":
183 |       return "ℹ️";
184 |     case "warning":
185 |       return "⚠️";
186 |     case "critical":
187 |       return "🔴";
188 |     default:
189 |       return "•";
190 |   }
191 | }
192 | 
193 | // Utility functions for type conversions to prevent common type errors
194 | export function convertBestPracticesReportToChecklistItems(
195 |   report: BestPracticesReport,
196 | ): ChecklistItem[] {
197 |   return report.items;
198 | }
199 | 
200 | export function generateHealthRecommendations(
201 |   analysis: HealthAnalysis,
202 | ): string[] {
203 |   return analysis.recommendations;
204 | }
205 | 
```

--------------------------------------------------------------------------------
/tests/memory/temporal-analysis.test.ts:
--------------------------------------------------------------------------------

```typescript
  1 | /**
  2 |  * Basic unit tests for Temporal Memory Analysis System
  3 |  * Tests core temporal analysis functionality
  4 |  * Part of Issue #55 - Advanced Memory Components Unit Tests
  5 |  */
  6 | 
  7 | import { promises as fs } from "fs";
  8 | import path from "path";
  9 | import os from "os";
 10 | import { MemoryManager } from "../../src/memory/manager.js";
 11 | import {
 12 |   TemporalMemoryAnalysis,
 13 |   TimeWindow,
 14 |   TemporalPattern,
 15 |   TemporalMetrics,
 16 |   TemporalQuery,
 17 |   TemporalInsight,
 18 | } from "../../src/memory/temporal-analysis.js";
 19 | 
 20 | describe("TemporalMemoryAnalysis", () => {
 21 |   let tempDir: string;
 22 |   let memoryManager: MemoryManager;
 23 |   let temporalAnalysis: TemporalMemoryAnalysis;
 24 | 
 25 |   beforeEach(async () => {
 26 |     // Create unique temp directory for each test
 27 |     tempDir = path.join(
 28 |       os.tmpdir(),
 29 |       `temporal-analysis-test-${Date.now()}-${Math.random()
 30 |         .toString(36)
 31 |         .substr(2, 9)}`,
 32 |     );
 33 |     await fs.mkdir(tempDir, { recursive: true });
 34 | 
 35 |     memoryManager = new MemoryManager(tempDir);
 36 |     await memoryManager.initialize();
 37 | 
 38 |     // Create required dependencies for TemporalMemoryAnalysis
 39 |     const storage = (memoryManager as any).storage;
 40 |     const learningSystem = {
 41 |       learn: jest.fn(),
 42 |       predict: jest.fn(),
 43 |       adaptModel: jest.fn(),
 44 |     };
 45 |     const knowledgeGraph = {
 46 |       addNode: jest.fn(),
 47 |       addEdge: jest.fn(),
 48 |       findPaths: jest.fn(),
 49 |     };
 50 | 
 51 |     temporalAnalysis = new TemporalMemoryAnalysis(
 52 |       storage,
 53 |       memoryManager,
 54 |       learningSystem as any,
 55 |       knowledgeGraph as any,
 56 |     );
 57 |   });
 58 | 
 59 |   afterEach(async () => {
 60 |     // Cleanup temp directory
 61 |     try {
 62 |       await fs.rm(tempDir, { recursive: true, force: true });
 63 |     } catch (error) {
 64 |       // Ignore cleanup errors
 65 |     }
 66 |   });
 67 | 
 68 |   describe("Temporal Analysis Initialization", () => {
 69 |     test("should create temporal analysis system instance", () => {
 70 |       expect(temporalAnalysis).toBeDefined();
 71 |       expect(temporalAnalysis).toBeInstanceOf(TemporalMemoryAnalysis);
 72 |     });
 73 | 
 74 |     test("should analyze temporal patterns", async () => {
 75 |       // Add some test memories
 76 |       await memoryManager.remember("analysis", {
 77 |         projectPath: "/test/project",
 78 |         timestamp: new Date().toISOString(),
 79 |       });
 80 | 
 81 |       // Test temporal pattern analysis
 82 |       const patterns = await temporalAnalysis.analyzeTemporalPatterns();
 83 |       expect(Array.isArray(patterns)).toBe(true);
 84 |     });
 85 | 
 86 |     test("should get temporal metrics", async () => {
 87 |       // Add test memory
 88 |       await memoryManager.remember("deployment", {
 89 |         status: "success",
 90 |         timestamp: new Date().toISOString(),
 91 |       });
 92 | 
 93 |       // Test temporal metrics
 94 |       const metrics = await temporalAnalysis.getTemporalMetrics();
 95 |       expect(metrics).toBeDefined();
 96 |       expect(typeof metrics.activityLevel).toBe("number");
 97 |     });
 98 | 
 99 |     test("should predict future activity", async () => {
100 |       // Add test memories
101 |       await memoryManager.remember("analysis", { test: "data1" });
102 |       await memoryManager.remember("analysis", { test: "data2" });
103 | 
104 |       // Test prediction
105 |       const prediction = await temporalAnalysis.predictFutureActivity();
106 |       expect(prediction).toBeDefined();
107 |       expect(typeof prediction.nextActivity.confidence).toBe("number");
108 |     });
109 | 
110 |     test("should get temporal insights", async () => {
111 |       // Add test memory
112 |       await memoryManager.remember("recommendation", {
113 |         type: "ssg",
114 |         recommendation: "use-hugo",
115 |       });
116 | 
117 |       // Test insights
118 |       const insights = await temporalAnalysis.getTemporalInsights();
119 |       expect(Array.isArray(insights)).toBe(true);
120 |     });
121 |   });
122 | 
123 |   describe("Temporal Query Support", () => {
124 |     test("should handle temporal queries with parameters", async () => {
125 |       // Add test data
126 |       await memoryManager.remember("analysis", { framework: "react" });
127 |       await memoryManager.remember("deployment", { status: "success" });
128 | 
129 |       const query: TemporalQuery = {
130 |         granularity: "day",
131 |         aggregation: "count",
132 |         filters: { types: ["analysis"] },
133 |       };
134 | 
135 |       const patterns = await temporalAnalysis.analyzeTemporalPatterns(query);
136 |       expect(Array.isArray(patterns)).toBe(true);
137 | 
138 |       const metrics = await temporalAnalysis.getTemporalMetrics(query);
139 |       expect(metrics).toBeDefined();
140 |     });
141 |   });
142 | 
143 |   describe("Error Handling", () => {
144 |     test("should handle empty data gracefully", async () => {
145 |       // Test with no memories
146 |       const patterns = await temporalAnalysis.analyzeTemporalPatterns();
147 |       expect(Array.isArray(patterns)).toBe(true);
148 |       expect(patterns.length).toBe(0);
149 | 
150 |       const metrics = await temporalAnalysis.getTemporalMetrics();
151 |       expect(metrics).toBeDefined();
152 |       expect(metrics.activityLevel).toBe(0);
153 |     });
154 | 
155 |     test("should handle invalid query parameters", async () => {
156 |       const invalidQuery = {
157 |         granularity: "invalid" as any,
158 |         aggregation: "count" as any,
159 |       };
160 | 
161 |       // Should not throw but handle gracefully
162 |       await expect(
163 |         temporalAnalysis.analyzeTemporalPatterns(invalidQuery),
164 |       ).resolves.toBeDefined();
165 |     });
166 |   });
167 | });
168 | 
```

--------------------------------------------------------------------------------
/setup-precommit.sh:
--------------------------------------------------------------------------------

```bash
  1 | #!/bin/bash
  2 | 
  3 | # Setup script for DocuMCP pre-commit hooks
  4 | # Based on: https://gist.githubusercontent.com/tosin2013/15b1d7bffafe17dff6374edf1530469b/raw/324c60dffb93ddd62c007effc1dbf3918c6483e8/install-precommit-tools.sh
  5 | 
  6 | set -e
  7 | 
  8 | echo "🚀 Setting up DocuMCP pre-commit hooks..."
  9 | 
 10 | # Colors for output
 11 | RED='\033[0;31m'
 12 | GREEN='\033[0;32m'
 13 | YELLOW='\033[1;33m'
 14 | BLUE='\033[0;34m'
 15 | NC='\033[0m' # No Color
 16 | 
 17 | # Function to print colored output
 18 | print_status() {
 19 |     echo -e "${BLUE}[INFO]${NC} $1"
 20 | }
 21 | 
 22 | print_success() {
 23 |     echo -e "${GREEN}[SUCCESS]${NC} $1"
 24 | }
 25 | 
 26 | print_warning() {
 27 |     echo -e "${YELLOW}[WARNING]${NC} $1"
 28 | }
 29 | 
 30 | print_error() {
 31 |     echo -e "${RED}[ERROR]${NC} $1"
 32 | }
 33 | 
 34 | # Check if we're in a git repository
 35 | if ! git rev-parse --git-dir > /dev/null 2>&1; then
 36 |     print_error "This is not a git repository!"
 37 |     exit 1
 38 | fi
 39 | 
 40 | # Check if Node.js and npm are installed
 41 | if ! command -v node &> /dev/null; then
 42 |     print_error "Node.js is not installed. Please install Node.js 20+ first."
 43 |     exit 1
 44 | fi
 45 | 
 46 | if ! command -v npm &> /dev/null; then
 47 |     print_error "npm is not installed. Please install npm first."
 48 |     exit 1
 49 | fi
 50 | 
 51 | # Check Node.js version
 52 | NODE_VERSION=$(node --version | cut -d'v' -f2 | cut -d'.' -f1)
 53 | if [ "$NODE_VERSION" -lt 20 ]; then
 54 |     print_error "Node.js version 20 or higher is required. Current version: $(node --version)"
 55 |     exit 1
 56 | fi
 57 | 
 58 | print_status "Node.js version: $(node --version) ✓"
 59 | 
 60 | # Install npm dependencies if needed
 61 | if [ ! -d "node_modules" ]; then
 62 |     print_status "Installing npm dependencies..."
 63 |     npm install
 64 | else
 65 |     print_status "npm dependencies already installed ✓"
 66 | fi
 67 | 
 68 | # Install pre-commit
 69 | print_status "Installing pre-commit..."
 70 | 
 71 | if command -v brew &> /dev/null; then
 72 |     # macOS with Homebrew
 73 |     if ! command -v pre-commit &> /dev/null; then
 74 |         print_status "Installing pre-commit via Homebrew..."
 75 |         brew install pre-commit
 76 |     else
 77 |         print_status "pre-commit already installed ✓"
 78 |     fi
 79 | elif command -v pip3 &> /dev/null; then
 80 |     # Linux/WSL with pip3
 81 |     if ! command -v pre-commit &> /dev/null; then
 82 |         print_status "Installing pre-commit via pip3..."
 83 |         pip3 install --user pre-commit
 84 |         # Add to PATH if needed
 85 |         if [[ ":$PATH:" != *":$HOME/.local/bin:"* ]]; then
 86 |             print_warning "Adding ~/.local/bin to PATH"
 87 |             echo 'export PATH="$HOME/.local/bin:$PATH"' >> ~/.bashrc
 88 |             export PATH="$HOME/.local/bin:$PATH"
 89 |         fi
 90 |     else
 91 |         print_status "pre-commit already installed ✓"
 92 |     fi
 93 | elif command -v pipx &> /dev/null; then
 94 |     # Alternative installation via pipx
 95 |     if ! command -v pre-commit &> /dev/null; then
 96 |         print_status "Installing pre-commit via pipx..."
 97 |         pipx install pre-commit
 98 |     else
 99 |         print_status "pre-commit already installed ✓"
100 |     fi
101 | else
102 |     print_error "Cannot install pre-commit. Please install either:"
103 |     print_error "  - Homebrew (macOS): brew install pre-commit"
104 |     print_error "  - pip3: pip3 install --user pre-commit"
105 |     print_error "  - pipx: pipx install pre-commit"
106 |     exit 1
107 | fi
108 | 
109 | # Verify pre-commit installation
110 | if ! command -v pre-commit &> /dev/null; then
111 |     print_error "pre-commit installation failed!"
112 |     exit 1
113 | fi
114 | 
115 | print_success "pre-commit installed: $(pre-commit --version)"
116 | 
117 | # Install pre-commit hooks
118 | print_status "Installing pre-commit hooks..."
119 | pre-commit install-hooks
120 | 
121 | # Update Husky pre-commit hook to use pre-commit
122 | if [ -f ".husky/pre-commit" ]; then
123 |     if ! grep -q "pre-commit run" .husky/pre-commit; then
124 |         print_status "Updating Husky pre-commit hook..."
125 |         echo "pre-commit run --all-files" > .husky/pre-commit
126 |         chmod +x .husky/pre-commit
127 |     else
128 |         print_status "Husky pre-commit hook already configured ✓"
129 |     fi
130 | else
131 |     print_warning "Husky pre-commit hook not found. Creating..."
132 |     mkdir -p .husky
133 |     echo "pre-commit run --all-files" > .husky/pre-commit
134 |     chmod +x .husky/pre-commit
135 | fi
136 | 
137 | # Test the setup
138 | print_status "Testing pre-commit setup..."
139 | if pre-commit run --all-files > /dev/null 2>&1; then
140 |     print_success "Pre-commit hooks are working!"
141 | else
142 |     print_warning "Pre-commit hooks encountered some issues (this is normal for first run)"
143 |     print_status "Running pre-commit with output for diagnosis..."
144 |     pre-commit run --all-files || true
145 | fi
146 | 
147 | print_success "🎉 Pre-commit setup complete!"
148 | echo
149 | echo "📋 Summary of installed hooks:"
150 | echo "  ✅ File integrity checks (trailing whitespace, end-of-file, etc.)"
151 | echo "  ✅ YAML/JSON validation"
152 | echo "  ✅ Security checks (private keys, large files)"
153 | echo "  ✅ ESLint code linting with auto-fix"
154 | echo "  ✅ Prettier code formatting"
155 | echo "  ✅ TypeScript type checking"
156 | echo "  ✅ npm security audit"
157 | echo "  ✅ Core Jest tests (stable tests only)"
158 | echo "  ✅ Documentation link checking"
159 | echo "  ✅ Package.json validation"
160 | echo "  ✅ Build verification"
161 | echo
162 | echo "🔧 Usage:"
163 | echo "  • Hooks run automatically on every commit"
164 | echo "  • Run manually: pre-commit run --all-files"
165 | echo "  • Update hooks: pre-commit autoupdate"
166 | echo "  • Skip hooks (emergency): git commit --no-verify"
167 | echo
168 | echo "📖 For team members:"
169 | echo "  • New team members should run: ./setup-precommit.sh"
170 | echo "  • All hooks are configured to match existing npm scripts"
171 | echo "  • Hooks focus on code quality without blocking development"
172 | echo
173 | print_success "Happy coding! 🚀"
174 | 
```

--------------------------------------------------------------------------------
/docs/api/modules.html:
--------------------------------------------------------------------------------

```html
1 | <!DOCTYPE html><html class="default" lang="en" data-base="./"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>DocuMCP API Documentation - v0.4.1</title><meta name="description" content="Documentation for DocuMCP API Documentation"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="assets/style.css"/><link rel="stylesheet" href="assets/highlight.css"/><script defer src="assets/main.js"></script><script async src="assets/icons.js" id="tsd-icons-script"></script><script async src="assets/search.js" id="tsd-search-script"></script><script async src="assets/navigation.js" id="tsd-nav-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="index.html" class="title">DocuMCP API Documentation - 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2 | 
```

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/docs/how-to/performance-optimization.md:
--------------------------------------------------------------------------------

```markdown
  1 | ---
  2 | documcp:
  3 |   last_updated: "2025-11-20T00:46:21.953Z"
  4 |   last_validated: "2025-12-09T19:41:38.584Z"
  5 |   auto_updated: false
  6 |   update_frequency: monthly
  7 |   validated_against_commit: 306567b32114502c606244ad6c2930360bcd4201
  8 | ---
  9 | 
 10 | # How to Optimize Documentation Deployment Performance
 11 | 
 12 | This guide shows you how to optimize your DocuMCP deployment process for faster builds and better deployment success rates.
 13 | 
 14 | ## Quick Setup
 15 | 
 16 | ```bash
 17 | # Analyze deployment performance:
 18 | "analyze my deployment performance and provide optimization recommendations"
 19 | ```
 20 | 
 21 | ## Deployment Performance Overview
 22 | 
 23 | DocuMCP tracks deployment performance metrics to help you optimize your documentation build process:
 24 | 
 25 | ### Key Metrics
 26 | 
 27 | - **Build Time**: Time taken for documentation generation
 28 | - **Deployment Success Rate**: Percentage of successful deployments
 29 | - **SSG Performance**: Static site generator efficiency comparison
 30 | - **Error Recovery**: Time to resolve deployment failures
 31 | 
 32 | ### Performance Benefits
 33 | 
 34 | - **Faster Deployments**: Reduced time from commit to live site
 35 | - **Higher Success Rates**: More reliable deployment pipeline
 36 | - **Better Developer Experience**: Quicker feedback cycles
 37 | - **Reduced Resource Usage**: Optimized build processes
 38 | 
 39 | ## Setup Methods
 40 | 
 41 | ### Method 1: Deployment Performance Analysis
 42 | 
 43 | ```bash
 44 | # Analyze deployment performance:
 45 | "analyze my deployment performance and provide optimization recommendations"
 46 | ```
 47 | 
 48 | This will:
 49 | 
 50 | 1. Analyze current deployment metrics
 51 | 2. Compare SSG build times
 52 | 3. Identify deployment bottlenecks
 53 | 4. Provide optimization recommendations
 54 | 5. Track performance improvements
 55 | 
 56 | ### Method 2: SSG Performance Comparison
 57 | 
 58 | #### Step 1: Build Time Analysis
 59 | 
 60 | ```bash
 61 | # Analyze build performance:
 62 | "compare build times across different static site generators"
 63 | ```
 64 | 
 65 | #### Step 2: Success Rate Optimization
 66 | 
 67 | ```bash
 68 | # Optimize deployment success:
 69 | "analyze deployment failures and suggest improvements"
 70 | ```
 71 | 
 72 | #### Step 3: Performance Monitoring
 73 | 
 74 | ```bash
 75 | # Monitor deployment performance:
 76 | "track my deployment performance over time"
 77 | ```
 78 | 
 79 | ## Deployment Optimization Techniques
 80 | 
 81 | ### SSG Selection Optimization
 82 | 
 83 | ```bash
 84 | # Analyze SSG performance:
 85 | "compare static site generator build times and success rates"
 86 | ```
 87 | 
 88 | #### SSG Performance Factors
 89 | 
 90 | - **Build Speed**: Time to generate documentation
 91 | - **Success Rate**: Reliability of builds
 92 | - **Resource Usage**: Memory and CPU requirements
 93 | - **Feature Support**: Compatibility with documentation needs
 94 | 
 95 | ### Build Configuration Optimization
 96 | 
 97 | ```typescript
 98 | // Optimize build configuration for faster deployments
 99 | const buildConfig = {
100 |   // Use faster package managers
101 |   packageManager: "pnpm", // or "yarn" for faster installs
102 | 
103 |   // Optimize Node.js version
104 |   nodeVersion: "20", // Latest LTS for better performance
105 | 
106 |   // Configure build caching
107 |   cache: {
108 |     enabled: true,
109 |     strategy: "aggressive",
110 |   },
111 | };
112 | ```
113 | 
114 | ### Deployment Pipeline Optimization
115 | 
116 | ```bash
117 | # Optimize deployment pipeline:
118 | "analyze my deployment pipeline and suggest performance improvements"
119 | ```
120 | 
121 | #### Pipeline Best Practices
122 | 
123 | - **Parallel Processing**: Run independent tasks concurrently
124 | - **Build Caching**: Cache dependencies and build artifacts
125 | - **Incremental Builds**: Only rebuild changed content
126 | - **Resource Allocation**: Optimize memory and CPU usage
127 | 
128 | ## Troubleshooting
129 | 
130 | ### Common Issues
131 | 
132 | **Problem**: Slow deployment builds
133 | **Solution**: Analyze SSG performance and switch to faster alternatives
134 | 
135 | **Problem**: Frequent deployment failures
136 | **Solution**: Review error patterns and optimize build configurations
137 | 
138 | **Problem**: Inconsistent build times
139 | **Solution**: Enable build caching and optimize dependencies
140 | 
141 | **Problem**: Resource exhaustion during builds
142 | **Solution**: Optimize memory usage and build parallelization
143 | 
144 | ### Performance Debugging
145 | 
146 | ```bash
147 | # Debug deployment performance issues:
148 | "analyze my deployment bottlenecks and suggest optimizations"
149 | ```
150 | 
151 | ## Best Practices
152 | 
153 | ### Deployment Performance Guidelines
154 | 
155 | 1. **Choose Fast SSGs**: Use performance data to select optimal static site generators
156 | 2. **Enable Caching**: Implement build caching for faster subsequent deployments
157 | 3. **Optimize Dependencies**: Keep dependencies minimal and up-to-date
158 | 4. **Monitor Build Times**: Track deployment performance over time
159 | 5. **Use Analytics**: Leverage deployment analytics for optimization decisions
160 | 
161 | ### Build Optimization Strategies
162 | 
163 | 1. **Incremental Builds**: Only rebuild changed content when possible
164 | 2. **Parallel Processing**: Run independent build tasks concurrently
165 | 3. **Resource Management**: Optimize memory and CPU usage during builds
166 | 4. **Dependency Caching**: Cache node_modules and build artifacts
167 | 5. **Build Environment**: Use optimized build environments and Node.js versions
168 | 
169 | ## Deployment Analytics Tools
170 | 
171 | ### Built-in DocuMCP Analytics
172 | 
173 | - **Build time tracking**: Monitor deployment speed over time
174 | - **Success rate analysis**: Track deployment reliability
175 | - **SSG performance comparison**: Compare static site generator efficiency
176 | - **Failure pattern analysis**: Identify common deployment issues
177 | 
178 | ### MCP Tools Available
179 | 
180 | - `analyze_deployments`: Get comprehensive deployment performance analytics
181 | - `deploy_pages`: Track deployment attempts and build times
182 | - `recommend_ssg`: Get performance-based SSG recommendations
183 | 
184 | ## Next Steps
185 | 
186 | - [Deploy Pages](../reference/mcp-tools.md#deploy_pages)
187 | - [Analytics Setup](analytics-setup.md)
188 | - [Site Monitoring](site-monitoring.md)
189 | - [Troubleshooting](troubleshooting.md)
190 | 
```
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